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Search of human proteins with 34878765
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34878765 F-box only protein 25 isoform 2 [Homo sapiens]
(358 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34878765 F-box only protein 25 isoform 2 [Homo sapiens] 758 0.0
gi|34878769 F-box only protein 25 isoform 1 [Homo sapiens] 750 0.0
gi|34878757 F-box only protein 25 isoform 3 [Homo sapiens] 548 e-156
gi|17158037 F-box only protein 32 isoform 1 [Homo sapiens] 458 e-129
gi|22547144 F-box only protein 32 isoform 2 [Homo sapiens] 273 2e-73
gi|241666392 CDC-like kinase 1 isoform 2 [Homo sapiens] 33 0.39
gi|67551261 CDC-like kinase 1 isoform 1 [Homo sapiens] 33 0.39
gi|148886718 zinc finger, CCHC domain containing 4 [Homo sapiens] 31 1.5
gi|30795123 F-box and WD repeat domain containing 8 isoform 1 [H... 30 2.6
gi|30795121 F-box and WD repeat domain containing 8 isoform 2 [H... 30 3.3
gi|31621309 leucine rich repeat containing 6 [Homo sapiens] 30 3.3
gi|187936946 hypothetical protein LOC84140 [Homo sapiens] 30 4.4
gi|182509180 zinc finger and BTB domain containing 1 isoform 1 [... 29 5.7
gi|182509178 zinc finger and BTB domain containing 1 isoform 2 [... 29 5.7
gi|111154074 palmitoylated membrane protein 7 [Homo sapiens] 29 5.7
gi|157952215 protein tyrosine phosphatase, receptor type, B isof... 29 7.4
gi|157952213 protein tyrosine phosphatase, receptor type, B isof... 29 7.4
gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD prote... 29 7.4
gi|42794779 myosin 18A isoform b [Homo sapiens] 29 7.4
gi|28416946 myosin 18A isoform a [Homo sapiens] 29 7.4
gi|239735519 SET binding factor 1 [Homo sapiens] 28 9.7
gi|39812378 RAN binding protein 9 [Homo sapiens] 28 9.7
>gi|34878765 F-box only protein 25 isoform 2 [Homo sapiens]
Length = 358
Score = 758 bits (1956), Expect = 0.0
Identities = 358/358 (100%), Positives = 358/358 (100%)
Query: 1 MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEH 60
MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEH
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEH 60
Query: 61 EYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIR 120
EYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIR
Sbjct: 61 EYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIR 120
Query: 121 RFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL 180
RFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL
Sbjct: 121 RFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL 180
Query: 181 CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNIL 240
CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNIL
Sbjct: 181 CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNIL 240
Query: 241 YRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMY 300
YRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMY
Sbjct: 241 YRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMY 300
Query: 301 FALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFTPVSPQHFIDLFKF 358
FALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFTPVSPQHFIDLFKF
Sbjct: 301 FALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFTPVSPQHFIDLFKF 358
>gi|34878769 F-box only protein 25 isoform 1 [Homo sapiens]
Length = 367
Score = 750 bits (1936), Expect = 0.0
Identities = 358/367 (97%), Positives = 358/367 (97%), Gaps = 9/367 (2%)
Query: 1 MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEH 60
MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEH
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEH 60
Query: 61 EYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIR 120
EYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIR
Sbjct: 61 EYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIR 120
Query: 121 RFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL 180
RFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL
Sbjct: 121 RFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL 180
Query: 181 CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNIL 240
CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNIL
Sbjct: 181 CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNIL 240
Query: 241 YRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMY 300
YRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMY
Sbjct: 241 YRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMY 300
Query: 301 FALQKHYPAKEQYGDTLHFCRHCSILFW---------KDSGHPCTAADPDSCFTPVSPQH 351
FALQKHYPAKEQYGDTLHFCRHCSILFW KDSGHPCTAADPDSCFTPVSPQH
Sbjct: 301 FALQKHYPAKEQYGDTLHFCRHCSILFWKDYHLALLFKDSGHPCTAADPDSCFTPVSPQH 360
Query: 352 FIDLFKF 358
FIDLFKF
Sbjct: 361 FIDLFKF 367
>gi|34878757 F-box only protein 25 isoform 3 [Homo sapiens]
Length = 291
Score = 548 bits (1413), Expect = e-156
Identities = 262/263 (99%), Positives = 263/263 (100%)
Query: 96 ERHGYCTLGEAFNRLDFSSAIQDIRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKI 155
+RHGYCTLGEAFNRLDFSSAIQDIRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKI
Sbjct: 29 KRHGYCTLGEAFNRLDFSSAIQDIRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKI 88
Query: 156 VQKVLDDHHNPRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQD 215
VQKVLDDHHNPRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQD
Sbjct: 89 VQKVLDDHHNPRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQD 148
Query: 216 LQMTKQVNNGLTLSDLPLHMLNNILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQY 275
LQMTKQVNNGLTLSDLPLHMLNNILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQY
Sbjct: 149 LQMTKQVNNGLTLSDLPLHMLNNILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQY 208
Query: 276 HFAEKQFCRHLILSEKGHIEWKLMYFALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPC 335
HFAEKQFCRHLILSEKGHIEWKLMYFALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPC
Sbjct: 209 HFAEKQFCRHLILSEKGHIEWKLMYFALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPC 268
Query: 336 TAADPDSCFTPVSPQHFIDLFKF 358
TAADPDSCFTPVSPQHFIDLFKF
Sbjct: 269 TAADPDSCFTPVSPQHFIDLFKF 291
>gi|17158037 F-box only protein 32 isoform 1 [Homo sapiens]
Length = 355
Score = 458 bits (1178), Expect = e-129
Identities = 221/360 (61%), Positives = 278/360 (77%), Gaps = 7/360 (1%)
Query: 1 MPFLGQDWRSPGWSWIKTEDGWKRC--ESCSQKLERENNRCNISHSIILNSEDGEIFNNE 58
MPFLGQDWRSPG +W+KT DGWKR E + ++ CN + N E+ +FN+
Sbjct: 1 MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCNKE---VYNKEN--LFNSL 55
Query: 59 EHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQD 118
++ A+KKRKKD + T TQ F++EKWIYVHK STKERHGYCTLGEAFNRLDFS+AI D
Sbjct: 56 NYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILD 115
Query: 119 IRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSS 178
RRFNYVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D N RLI++LLQ L +
Sbjct: 116 SRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYT 175
Query: 179 TLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNN 238
+LC L++ VGKSVLVGNIN+W+ R+ETIL WQQQL ++Q+T+ GLT +DLPL + N
Sbjct: 176 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN 235
Query: 239 ILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKL 298
I+ R SDG D+++LGQ P L++LSEDR LWKKLCQYHF+E+Q + LILS+KG ++WK
Sbjct: 236 IMQRLSDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKK 295
Query: 299 MYFALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFTPVSPQHFIDLFKF 358
MYF L + YP KEQYGDTL C+HC IL WK + HPCTA +P+SC +SPQ FI+LFKF
Sbjct: 296 MYFKLVRCYPRKEQYGDTLQLCKHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 355
>gi|22547144 F-box only protein 32 isoform 2 [Homo sapiens]
Length = 210
Score = 273 bits (698), Expect = 2e-73
Identities = 126/209 (60%), Positives = 163/209 (77%)
Query: 150 NILDKIVQKVLDDHHNPRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWICRLETILAW 209
NIL+K+V KVL+D N RLI++LLQ L ++LC L++ VGKSVLVGNIN+W+ R+ETIL W
Sbjct: 2 NILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTLVQRVGKSVLVGNINMWVYRMETILHW 61
Query: 210 QQQLQDLQMTKQVNNGLTLSDLPLHMLNNILYRFSDGWDIITLGQVTPTLYMLSEDRQLW 269
QQQL ++Q+T+ GLT +DLPL + NI+ R SDG D+++LGQ P L++LSEDR LW
Sbjct: 62 QQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRLSDGRDLVSLGQAAPDLHVLSEDRLLW 121
Query: 270 KKLCQYHFAEKQFCRHLILSEKGHIEWKLMYFALQKHYPAKEQYGDTLHFCRHCSILFWK 329
KKLCQYHF+E+Q + LILS+KG ++WK MYF L + YP KEQYGDTL C+HC IL WK
Sbjct: 122 KKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKLVRCYPRKEQYGDTLQLCKHCHILSWK 181
Query: 330 DSGHPCTAADPDSCFTPVSPQHFIDLFKF 358
+ HPCTA +P+SC +SPQ FI+LFKF
Sbjct: 182 GTDHPCTANNPESCSVSLSPQDFINLFKF 210
>gi|241666392 CDC-like kinase 1 isoform 2 [Homo sapiens]
Length = 526
Score = 33.1 bits (74), Expect = 0.39
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 6 QDWRSPGWSWIKTEDGWKRCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEHEYASK 65
+DW W + KR S +Q EN RC +HS + +S E + E +Y S
Sbjct: 57 KDWDYGKWRSSSSHKRRKRSHSSAQ----ENKRCKYNHSKMCDSHYLESRSINEKDYHS- 111
Query: 66 KRKKDHFRND 75
+R D +RND
Sbjct: 112 RRYIDEYRND 121
>gi|67551261 CDC-like kinase 1 isoform 1 [Homo sapiens]
Length = 484
Score = 33.1 bits (74), Expect = 0.39
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 6 QDWRSPGWSWIKTEDGWKRCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEHEYASK 65
+DW W + KR S +Q EN RC +HS + +S E + E +Y S
Sbjct: 15 KDWDYGKWRSSSSHKRRKRSHSSAQ----ENKRCKYNHSKMCDSHYLESRSINEKDYHS- 69
Query: 66 KRKKDHFRND 75
+R D +RND
Sbjct: 70 RRYIDEYRND 79
>gi|148886718 zinc finger, CCHC domain containing 4 [Homo sapiens]
Length = 513
Score = 31.2 bits (69), Expect = 1.5
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 16 IKTEDGWKRCESCSQKLERENNRCNISHSIILNSEDGEIFNN 57
+ TE+G++ C C + + EN C + +S S+DG +N+
Sbjct: 371 LPTEEGYRFCSPCQRYVSLENQHCELCNS--CTSKDGRKWNH 410
>gi|30795123 F-box and WD repeat domain containing 8 isoform 1 [Homo
sapiens]
Length = 598
Score = 30.4 bits (67), Expect = 2.6
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 211 QQLQDLQMTKQVN--NGLTLSD--LPLHMLNNILYRFSDGWDIITLGQVTPTLYMLSEDR 266
+QL D Q+ + +N N + D LP + NI +++ D ++ QV+ T +++ED
Sbjct: 96 EQLVD-QLIRDLNEMNDVPFFDIQLPYELAINI-FQYLDRKELGRCAQVSKTWKVIAEDE 153
Query: 267 QLWKKLCQ 274
LW +LCQ
Sbjct: 154 VLWYRLCQ 161
>gi|30795121 F-box and WD repeat domain containing 8 isoform 2 [Homo
sapiens]
Length = 532
Score = 30.0 bits (66), Expect = 3.3
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 231 LPLHMLNNILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQ 274
LP + NI +++ D ++ QV+ T +++ED LW +LCQ
Sbjct: 53 LPYELAINI-FQYLDRKELGRCAQVSKTWKVIAEDEVLWYRLCQ 95
>gi|31621309 leucine rich repeat containing 6 [Homo sapiens]
Length = 466
Score = 30.0 bits (66), Expect = 3.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 43 HSIILNSEDGEIFNNEEHEYASKKRKKDHFRNDTNTQSFYREK 85
H +I + GE+ + + S K D R TNT+S + EK
Sbjct: 373 HLVICMPKVGEVITGGQRAFKSMKTTSDRSREQTNTRSKHMEK 415
>gi|187936946 hypothetical protein LOC84140 [Homo sapiens]
Length = 660
Score = 29.6 bits (65), Expect = 4.4
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 49 SEDGEIFNNEEHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKER 97
+ED E FN EE + ++ ++++ DTN+Q Y+EK ++ES +E+
Sbjct: 608 TEDKESFNEEE-KIEERENGEENYFIDTNSQDSYKEK-DEANEESEEEK 654
>gi|182509180 zinc finger and BTB domain containing 1 isoform 1
[Homo sapiens]
Length = 713
Score = 29.3 bits (64), Expect = 5.7
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 24 RCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEHEYASKKRKKDHFRNDTNTQSFYR 83
RC +C Q+ E EN S + D ++F + E + ++ HF N + FY+
Sbjct: 535 RCPNCGQRFETENLVVEHMSSCL----DQDMFKSAIMEENERDHRRKHFCNLCG-KGFYQ 589
Query: 84 EKWIYVH-KESTKERHGYC-TLGEAFNR 109
+ H TKE+ C T G+ F R
Sbjct: 590 RCHLREHYTVHTKEKQFVCQTCGKQFLR 617
>gi|182509178 zinc finger and BTB domain containing 1 isoform 2
[Homo sapiens]
Length = 644
Score = 29.3 bits (64), Expect = 5.7
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 24 RCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEHEYASKKRKKDHFRNDTNTQSFYR 83
RC +C Q+ E EN S + D ++F + E + ++ HF N + FY+
Sbjct: 535 RCPNCGQRFETENLVVEHMSSCL----DQDMFKSAIMEENERDHRRKHFCNLCG-KGFYQ 589
Query: 84 EKWIYVH-KESTKERHGYC-TLGEAFNR 109
+ H TKE+ C T G+ F R
Sbjct: 590 RCHLREHYTVHTKEKQFVCQTCGKQFLR 617
>gi|111154074 palmitoylated membrane protein 7 [Homo sapiens]
Length = 576
Score = 29.3 bits (64), Expect = 5.7
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 84 EKWIYVHKESTKE-RHGYCTLGEAFNRLDFSSAIQDIRRFNYVVKLLQLIAKSQLTSLSG 142
EK Y K+S HG L + D + +Q+ + + +LL+L++K + +L
Sbjct: 55 EKLHYYEKQSPVPILHGAAALAD-----DLAEELQNKPLNSEIRELLKLLSKPNVKALLS 109
Query: 143 V----AQKNYFNILDKIVQKVLDDHHNPRLIK 170
V AQKNY +L + + + D+ + ++I+
Sbjct: 110 VHDTVAQKNYDPVLPPMPEDIDDEEDSVKIIR 141
>gi|157952215 protein tyrosine phosphatase, receptor type, B isoform a
[Homo sapiens]
Length = 2215
Score = 28.9 bits (63), Expect = 7.4
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 128 LLQLIAKSQLTS-------LSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL 180
+LQ++++S L + G Q + ++ V DH P + L+Q + +
Sbjct: 2047 ILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVR 2106
Query: 181 CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNI 239
+ R G V + + + R T +A + LQ L V+ + DL LH ++ +
Sbjct: 2107 DYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMV 2165
>gi|157952213 protein tyrosine phosphatase, receptor type, B isoform b
precursor [Homo sapiens]
Length = 1997
Score = 28.9 bits (63), Expect = 7.4
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 128 LLQLIAKSQLTS-------LSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTL 180
+LQ++++S L + G Q + ++ V DH P + L+Q + +
Sbjct: 1829 ILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVR 1888
Query: 181 CILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNI 239
+ R G V + + + R T +A + LQ L V+ + DL LH ++ +
Sbjct: 1889 DYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMV 1947
>gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD protein,
partial [Homo sapiens]
Length = 1700
Score = 28.9 bits (63), Expect = 7.4
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 170 KDLLQDLSSTLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVN-NGLTL 228
K + + + +L G+ V + + +W + + + W ++ QD K V G T
Sbjct: 920 KTICAEFAILRMLLQNSEGRCVYITPMRLW--QEQVYMDWYEKFQDRLNKKVVLLTGETS 977
Query: 229 SDLPLHMLNNILYRFSDGWDIIT 251
+DL L NI+ + WDI++
Sbjct: 978 TDLKLLGKGNIIISTPEKWDILS 1000
>gi|42794779 myosin 18A isoform b [Homo sapiens]
Length = 2039
Score = 28.9 bits (63), Expect = 7.4
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 26 ESCSQKLERENNRCNISHSIILNSEDGEIFNNEEHEYASKKRKKDHFRNDTNTQSFYREK 85
E +LE E R +HS + S D E+ EE + +K+ K + + + Y +K
Sbjct: 1569 EQAKLRLEMEMERMRQTHSKEMESRDEEV---EEARQSCQKKLK---QMEVQLEEEYEDK 1622
Query: 86 WIYVHKESTKERHGYCTLGEAFNRLDFSS 114
V +E + TL + NR DF S
Sbjct: 1623 Q-KVLREKRELEGKLATLSDQVNRRDFES 1650
>gi|28416946 myosin 18A isoform a [Homo sapiens]
Length = 2054
Score = 28.9 bits (63), Expect = 7.4
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 26 ESCSQKLERENNRCNISHSIILNSEDGEIFNNEEHEYASKKRKKDHFRNDTNTQSFYREK 85
E +LE E R +HS + S D E+ EE + +K+ K + + + Y +K
Sbjct: 1569 EQAKLRLEMEMERMRQTHSKEMESRDEEV---EEARQSCQKKLK---QMEVQLEEEYEDK 1622
Query: 86 WIYVHKESTKERHGYCTLGEAFNRLDFSS 114
V +E + TL + NR DF S
Sbjct: 1623 Q-KVLREKRELEGKLATLSDQVNRRDFES 1650
>gi|239735519 SET binding factor 1 [Homo sapiens]
Length = 1893
Score = 28.5 bits (62), Expect = 9.7
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 211 QQLQDLQMTKQVNNGLTLSDLPLHMLNN---ILYRFSDGWDIITLGQVTPTLYMLSE 264
+ L+D + Q++ L +S L + +L++ +L DGWDI T QV + +LS+
Sbjct: 1412 RSLEDSEWLIQIHKLLQVSVLVVELLDSGSSVLVGLEDGWDITT--QVVSLVQLLSD 1466
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 28.5 bits (62), Expect = 9.7
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 98 HGYCTLGEAFNRLDFSSAIQDIRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDK 154
HGYC EAF R + ++++ ++ +L+ ++ Q+ Y ++L++
Sbjct: 380 HGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEAIETTQQLYPSLLER 436
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,367,725
Number of Sequences: 37866
Number of extensions: 622339
Number of successful extensions: 1707
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1694
Number of HSP's gapped (non-prelim): 24
length of query: 358
length of database: 18,247,518
effective HSP length: 103
effective length of query: 255
effective length of database: 14,347,320
effective search space: 3658566600
effective search space used: 3658566600
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.