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Search of human proteins with 34577077
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34577077 retinoblastoma-like protein 1 isoform b [Homo
sapiens]
(1014 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34577077 retinoblastoma-like protein 1 isoform b [Homo sapiens] 2039 0.0
gi|34577079 retinoblastoma-like protein 1 isoform a [Homo sapiens] 2035 0.0
gi|172072597 retinoblastoma-like 2 (p130) [Homo sapiens] 996 0.0
gi|108773787 retinoblastoma 1 [Homo sapiens] 181 3e-45
gi|167736355 mucin 4 isoform a [Homo sapiens] 36 0.21
gi|7661844 coiled-coil domain containing 22 [Homo sapiens] 34 0.80
gi|83367077 mucin 16 [Homo sapiens] 32 3.0
gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens] 32 3.0
gi|125858485 hypothetical protein LOC80209 isoform 2 [Homo sapiens] 32 4.0
gi|125656155 hypothetical protein LOC80209 isoform 1 [Homo sapiens] 32 4.0
gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ... 32 4.0
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 5.2
gi|61102725 la related protein isoform 2 [Homo sapiens] 31 5.2
gi|39725634 la related protein isoform 1 [Homo sapiens] 31 5.2
gi|4503515 eukaryotic translation initiation factor 3, subunit 3... 31 6.7
gi|24308227 zinc finger protein 687 [Homo sapiens] 30 8.8
>gi|34577077 retinoblastoma-like protein 1 isoform b [Homo sapiens]
Length = 1014
Score = 2039 bits (5282), Expect = 0.0
Identities = 1014/1014 (100%), Positives = 1014/1014 (100%)
Query: 1 MFEDKPHAEGAAVVAAAGEALQALCQELNLDEGSAAEALDDFTAIRGNYSLEGEVTHWLA 60
MFEDKPHAEGAAVVAAAGEALQALCQELNLDEGSAAEALDDFTAIRGNYSLEGEVTHWLA
Sbjct: 1 MFEDKPHAEGAAVVAAAGEALQALCQELNLDEGSAAEALDDFTAIRGNYSLEGEVTHWLA 60
Query: 61 CSLYVACRKSIIPTVGKGIMEGNCVSLTRILRSAKLSLIQFFSKMKKWMDMSNLPQEFRE 120
CSLYVACRKSIIPTVGKGIMEGNCVSLTRILRSAKLSLIQFFSKMKKWMDMSNLPQEFRE
Sbjct: 61 CSLYVACRKSIIPTVGKGIMEGNCVSLTRILRSAKLSLIQFFSKMKKWMDMSNLPQEFRE 120
Query: 121 RIERLERNFEVSTVIFKKYEPIFLDIFQNPYEEPPKLPRSRKQRRIPCSVKDLFNFCWTL 180
RIERLERNFEVSTVIFKKYEPIFLDIFQNPYEEPPKLPRSRKQRRIPCSVKDLFNFCWTL
Sbjct: 121 RIERLERNFEVSTVIFKKYEPIFLDIFQNPYEEPPKLPRSRKQRRIPCSVKDLFNFCWTL 180
Query: 181 FVYTKGNFRMIGDDLVNSYHLLLCCLDLIFANAIMCPNRQDLLNPSFKGLPSDFHTADFT 240
FVYTKGNFRMIGDDLVNSYHLLLCCLDLIFANAIMCPNRQDLLNPSFKGLPSDFHTADFT
Sbjct: 181 FVYTKGNFRMIGDDLVNSYHLLLCCLDLIFANAIMCPNRQDLLNPSFKGLPSDFHTADFT 240
Query: 241 ASEEPPCIIAVLCELHDGLLVEAKGIKEHYFKPYISKLFDRKILKGECLLDLSSFTDNSK 300
ASEEPPCIIAVLCELHDGLLVEAKGIKEHYFKPYISKLFDRKILKGECLLDLSSFTDNSK
Sbjct: 241 ASEEPPCIIAVLCELHDGLLVEAKGIKEHYFKPYISKLFDRKILKGECLLDLSSFTDNSK 300
Query: 301 AVNKEYEEYVLTVGDFDERIFLGADAEEEIGTPRKFTRDTPLGKLTAQANVEYNLQQHFE 360
AVNKEYEEYVLTVGDFDERIFLGADAEEEIGTPRKFTRDTPLGKLTAQANVEYNLQQHFE
Sbjct: 301 AVNKEYEEYVLTVGDFDERIFLGADAEEEIGTPRKFTRDTPLGKLTAQANVEYNLQQHFE 360
Query: 361 KKRSFAPSTPLTGRRYLREKEAVITPVASATQSVSRLQSIVAGLKNAPSDQLINIFESCV 420
KKRSFAPSTPLTGRRYLREKEAVITPVASATQSVSRLQSIVAGLKNAPSDQLINIFESCV
Sbjct: 361 KKRSFAPSTPLTGRRYLREKEAVITPVASATQSVSRLQSIVAGLKNAPSDQLINIFESCV 420
Query: 421 RNPVENIMKILKGIGETFCQHYTQSTDEQPGSHIDFAVNRLKLAEILYYKILETVMVQET 480
RNPVENIMKILKGIGETFCQHYTQSTDEQPGSHIDFAVNRLKLAEILYYKILETVMVQET
Sbjct: 421 RNPVENIMKILKGIGETFCQHYTQSTDEQPGSHIDFAVNRLKLAEILYYKILETVMVQET 480
Query: 481 RRLHGMDMSVLLEQDIFHRSLMACCLEIVLFAYSSPRTFPWIIEVLNLQPFYFYKVIEVV 540
RRLHGMDMSVLLEQDIFHRSLMACCLEIVLFAYSSPRTFPWIIEVLNLQPFYFYKVIEVV
Sbjct: 481 RRLHGMDMSVLLEQDIFHRSLMACCLEIVLFAYSSPRTFPWIIEVLNLQPFYFYKVIEVV 540
Query: 541 IRSEEGLSRDMVKHLNSIEEQILESLAWSHDSALWEALQVSANKVPTCEEVIFPNNFETG 600
IRSEEGLSRDMVKHLNSIEEQILESLAWSHDSALWEALQVSANKVPTCEEVIFPNNFETG
Sbjct: 541 IRSEEGLSRDMVKHLNSIEEQILESLAWSHDSALWEALQVSANKVPTCEEVIFPNNFETG 600
Query: 601 NGGNVQGHLPLMPMSPLMHPRVKEVRTDSGSLRRDMQPLSPISVHERYSSPTAGSAKRRL 660
NGGNVQGHLPLMPMSPLMHPRVKEVRTDSGSLRRDMQPLSPISVHERYSSPTAGSAKRRL
Sbjct: 601 NGGNVQGHLPLMPMSPLMHPRVKEVRTDSGSLRRDMQPLSPISVHERYSSPTAGSAKRRL 660
Query: 661 FGEDPPKEMLMDKIITEGTKLKIAPSSSITAENVSILPGQTLLTMATAPVTGTTGHKVTI 720
FGEDPPKEMLMDKIITEGTKLKIAPSSSITAENVSILPGQTLLTMATAPVTGTTGHKVTI
Sbjct: 661 FGEDPPKEMLMDKIITEGTKLKIAPSSSITAENVSILPGQTLLTMATAPVTGTTGHKVTI 720
Query: 721 PLHGVANDAGEITLIPLSMNTNQESKVKSPVSLTAHSLIGASPKQTNLTKAQEVHSTGIN 780
PLHGVANDAGEITLIPLSMNTNQESKVKSPVSLTAHSLIGASPKQTNLTKAQEVHSTGIN
Sbjct: 721 PLHGVANDAGEITLIPLSMNTNQESKVKSPVSLTAHSLIGASPKQTNLTKAQEVHSTGIN 780
Query: 781 RPKRTGSLALFYRKVYHLASVRLRDLCLKLDVSNELRRKIWTCFEFTLVHCPDLMKDRHL 840
RPKRTGSLALFYRKVYHLASVRLRDLCLKLDVSNELRRKIWTCFEFTLVHCPDLMKDRHL
Sbjct: 781 RPKRTGSLALFYRKVYHLASVRLRDLCLKLDVSNELRRKIWTCFEFTLVHCPDLMKDRHL 840
Query: 841 DQLLLCAFYIMAKVTKEERTFQEIMKSYRNQPQANSHVYRSVLLKSIPREVVAYNKNIND 900
DQLLLCAFYIMAKVTKEERTFQEIMKSYRNQPQANSHVYRSVLLKSIPREVVAYNKNIND
Sbjct: 841 DQLLLCAFYIMAKVTKEERTFQEIMKSYRNQPQANSHVYRSVLLKSIPREVVAYNKNIND 900
Query: 901 DFEMIDCDLEDATKTPDCSSGPVKEERGDLIKFYNTIYVGRVKSFALKYDLANQDHMMDA 960
DFEMIDCDLEDATKTPDCSSGPVKEERGDLIKFYNTIYVGRVKSFALKYDLANQDHMMDA
Sbjct: 901 DFEMIDCDLEDATKTPDCSSGPVKEERGDLIKFYNTIYVGRVKSFALKYDLANQDHMMDA 960
Query: 961 PPLSPFPHIKQQPGSPRRISQQHSIYISPHKNGSGLTPRSALLYKFNGSPSKVR 1014
PPLSPFPHIKQQPGSPRRISQQHSIYISPHKNGSGLTPRSALLYKFNGSPSKVR
Sbjct: 961 PPLSPFPHIKQQPGSPRRISQQHSIYISPHKNGSGLTPRSALLYKFNGSPSKVR 1014
>gi|34577079 retinoblastoma-like protein 1 isoform a [Homo sapiens]
Length = 1068
Score = 2035 bits (5273), Expect = 0.0
Identities = 1012/1012 (100%), Positives = 1012/1012 (100%)
Query: 1 MFEDKPHAEGAAVVAAAGEALQALCQELNLDEGSAAEALDDFTAIRGNYSLEGEVTHWLA 60
MFEDKPHAEGAAVVAAAGEALQALCQELNLDEGSAAEALDDFTAIRGNYSLEGEVTHWLA
Sbjct: 1 MFEDKPHAEGAAVVAAAGEALQALCQELNLDEGSAAEALDDFTAIRGNYSLEGEVTHWLA 60
Query: 61 CSLYVACRKSIIPTVGKGIMEGNCVSLTRILRSAKLSLIQFFSKMKKWMDMSNLPQEFRE 120
CSLYVACRKSIIPTVGKGIMEGNCVSLTRILRSAKLSLIQFFSKMKKWMDMSNLPQEFRE
Sbjct: 61 CSLYVACRKSIIPTVGKGIMEGNCVSLTRILRSAKLSLIQFFSKMKKWMDMSNLPQEFRE 120
Query: 121 RIERLERNFEVSTVIFKKYEPIFLDIFQNPYEEPPKLPRSRKQRRIPCSVKDLFNFCWTL 180
RIERLERNFEVSTVIFKKYEPIFLDIFQNPYEEPPKLPRSRKQRRIPCSVKDLFNFCWTL
Sbjct: 121 RIERLERNFEVSTVIFKKYEPIFLDIFQNPYEEPPKLPRSRKQRRIPCSVKDLFNFCWTL 180
Query: 181 FVYTKGNFRMIGDDLVNSYHLLLCCLDLIFANAIMCPNRQDLLNPSFKGLPSDFHTADFT 240
FVYTKGNFRMIGDDLVNSYHLLLCCLDLIFANAIMCPNRQDLLNPSFKGLPSDFHTADFT
Sbjct: 181 FVYTKGNFRMIGDDLVNSYHLLLCCLDLIFANAIMCPNRQDLLNPSFKGLPSDFHTADFT 240
Query: 241 ASEEPPCIIAVLCELHDGLLVEAKGIKEHYFKPYISKLFDRKILKGECLLDLSSFTDNSK 300
ASEEPPCIIAVLCELHDGLLVEAKGIKEHYFKPYISKLFDRKILKGECLLDLSSFTDNSK
Sbjct: 241 ASEEPPCIIAVLCELHDGLLVEAKGIKEHYFKPYISKLFDRKILKGECLLDLSSFTDNSK 300
Query: 301 AVNKEYEEYVLTVGDFDERIFLGADAEEEIGTPRKFTRDTPLGKLTAQANVEYNLQQHFE 360
AVNKEYEEYVLTVGDFDERIFLGADAEEEIGTPRKFTRDTPLGKLTAQANVEYNLQQHFE
Sbjct: 301 AVNKEYEEYVLTVGDFDERIFLGADAEEEIGTPRKFTRDTPLGKLTAQANVEYNLQQHFE 360
Query: 361 KKRSFAPSTPLTGRRYLREKEAVITPVASATQSVSRLQSIVAGLKNAPSDQLINIFESCV 420
KKRSFAPSTPLTGRRYLREKEAVITPVASATQSVSRLQSIVAGLKNAPSDQLINIFESCV
Sbjct: 361 KKRSFAPSTPLTGRRYLREKEAVITPVASATQSVSRLQSIVAGLKNAPSDQLINIFESCV 420
Query: 421 RNPVENIMKILKGIGETFCQHYTQSTDEQPGSHIDFAVNRLKLAEILYYKILETVMVQET 480
RNPVENIMKILKGIGETFCQHYTQSTDEQPGSHIDFAVNRLKLAEILYYKILETVMVQET
Sbjct: 421 RNPVENIMKILKGIGETFCQHYTQSTDEQPGSHIDFAVNRLKLAEILYYKILETVMVQET 480
Query: 481 RRLHGMDMSVLLEQDIFHRSLMACCLEIVLFAYSSPRTFPWIIEVLNLQPFYFYKVIEVV 540
RRLHGMDMSVLLEQDIFHRSLMACCLEIVLFAYSSPRTFPWIIEVLNLQPFYFYKVIEVV
Sbjct: 481 RRLHGMDMSVLLEQDIFHRSLMACCLEIVLFAYSSPRTFPWIIEVLNLQPFYFYKVIEVV 540
Query: 541 IRSEEGLSRDMVKHLNSIEEQILESLAWSHDSALWEALQVSANKVPTCEEVIFPNNFETG 600
IRSEEGLSRDMVKHLNSIEEQILESLAWSHDSALWEALQVSANKVPTCEEVIFPNNFETG
Sbjct: 541 IRSEEGLSRDMVKHLNSIEEQILESLAWSHDSALWEALQVSANKVPTCEEVIFPNNFETG 600
Query: 601 NGGNVQGHLPLMPMSPLMHPRVKEVRTDSGSLRRDMQPLSPISVHERYSSPTAGSAKRRL 660
NGGNVQGHLPLMPMSPLMHPRVKEVRTDSGSLRRDMQPLSPISVHERYSSPTAGSAKRRL
Sbjct: 601 NGGNVQGHLPLMPMSPLMHPRVKEVRTDSGSLRRDMQPLSPISVHERYSSPTAGSAKRRL 660
Query: 661 FGEDPPKEMLMDKIITEGTKLKIAPSSSITAENVSILPGQTLLTMATAPVTGTTGHKVTI 720
FGEDPPKEMLMDKIITEGTKLKIAPSSSITAENVSILPGQTLLTMATAPVTGTTGHKVTI
Sbjct: 661 FGEDPPKEMLMDKIITEGTKLKIAPSSSITAENVSILPGQTLLTMATAPVTGTTGHKVTI 720
Query: 721 PLHGVANDAGEITLIPLSMNTNQESKVKSPVSLTAHSLIGASPKQTNLTKAQEVHSTGIN 780
PLHGVANDAGEITLIPLSMNTNQESKVKSPVSLTAHSLIGASPKQTNLTKAQEVHSTGIN
Sbjct: 721 PLHGVANDAGEITLIPLSMNTNQESKVKSPVSLTAHSLIGASPKQTNLTKAQEVHSTGIN 780
Query: 781 RPKRTGSLALFYRKVYHLASVRLRDLCLKLDVSNELRRKIWTCFEFTLVHCPDLMKDRHL 840
RPKRTGSLALFYRKVYHLASVRLRDLCLKLDVSNELRRKIWTCFEFTLVHCPDLMKDRHL
Sbjct: 781 RPKRTGSLALFYRKVYHLASVRLRDLCLKLDVSNELRRKIWTCFEFTLVHCPDLMKDRHL 840
Query: 841 DQLLLCAFYIMAKVTKEERTFQEIMKSYRNQPQANSHVYRSVLLKSIPREVVAYNKNIND 900
DQLLLCAFYIMAKVTKEERTFQEIMKSYRNQPQANSHVYRSVLLKSIPREVVAYNKNIND
Sbjct: 841 DQLLLCAFYIMAKVTKEERTFQEIMKSYRNQPQANSHVYRSVLLKSIPREVVAYNKNIND 900
Query: 901 DFEMIDCDLEDATKTPDCSSGPVKEERGDLIKFYNTIYVGRVKSFALKYDLANQDHMMDA 960
DFEMIDCDLEDATKTPDCSSGPVKEERGDLIKFYNTIYVGRVKSFALKYDLANQDHMMDA
Sbjct: 901 DFEMIDCDLEDATKTPDCSSGPVKEERGDLIKFYNTIYVGRVKSFALKYDLANQDHMMDA 960
Query: 961 PPLSPFPHIKQQPGSPRRISQQHSIYISPHKNGSGLTPRSALLYKFNGSPSK 1012
PPLSPFPHIKQQPGSPRRISQQHSIYISPHKNGSGLTPRSALLYKFNGSPSK
Sbjct: 961 PPLSPFPHIKQQPGSPRRISQQHSIYISPHKNGSGLTPRSALLYKFNGSPSK 1012
>gi|172072597 retinoblastoma-like 2 (p130) [Homo sapiens]
Length = 1139
Score = 996 bits (2576), Expect = 0.0
Identities = 536/1076 (49%), Positives = 709/1076 (65%), Gaps = 84/1076 (7%)
Query: 3 EDKPHAEGAAVVAAAG-----EALQALCQELNLDEGSAAEALDDFTAIRGNYSLEGEVTH 57
ED AE AA A + + LC LN+DE + AEA D + ++ +Y+LEG H
Sbjct: 26 EDDGEAEDAAPPAESPTPQIQQRFDELCSRLNMDEAARAEAWDSYRSMSESYTLEGNDLH 85
Query: 58 WLACSLYVACRKSIIPTVGKGIMEGNCVSLTRILRSAKLSLIQFFSKMKKWMDMSNLPQE 117
WLAC+LYVACRKS+ PTV KG +EGN VSLTRIL+ ++ SLI+FF+KMKKW DM+NLP
Sbjct: 86 WLACALYVACRKSV-PTVSKGTVEGNYVSLTRILKCSEQSLIEFFNKMKKWEDMANLPPH 144
Query: 118 FRERIERLERNFEVSTVIFKKYEPIFLDIFQNPYEEPPKLPRSRKQRRIPCSVKDLFNFC 177
FRER ERLERNF VS VIFKKYEPIF DIF+ P EE P+ R RKQRR PC+V ++F+FC
Sbjct: 145 FRERTERLERNFTVSAVIFKKYEPIFQDIFKYPQEEQPRQQRGRKQRRQPCTVSEIFHFC 204
Query: 178 WTLFVYTKGNFRMIGDDLVNSYHLLLCCLDLIFANAIMCPNRQDLLNPSFKGLPSDFHTA 237
W LF+Y KGNF MI DDLVNSYHLLLC LDL++ NA+ C NR++L+NP+FKGL DFH
Sbjct: 205 WVLFIYAKGNFPMISDDLVNSYHLLLCALDLVYGNALQCSNRKELVNPNFKGLSEDFHAK 264
Query: 238 DFTASEEPPCIIAVLCELHDGLLVEAKGIKEHYFKPYISKLFDRKILKGE-----CLLDL 292
D S +PPCII LC LHDGL++EAKGIKEH++KPYI KL+++K+LKG+ L+
Sbjct: 265 DSKPSSDPPCIIEKLCSLHDGLVLEAKGIKEHFWKPYIRKLYEKKLLKGKEENLTGFLEP 324
Query: 293 SSFTDNSKAVNKEYEEYVLTVGDFDERIFLGADAEEEIGTPRKFTRDTPLGKLTAQANVE 352
+F ++ KA+NK YEEYVL+VG+ DERIFLG DAEEEIGT + + + ++
Sbjct: 325 GNFGESFKAINKAYEEYVLSVGNLDERIFLGEDAEEEIGTLSRCLNAGSGTETAERVQMK 384
Query: 353 YNLQQHFEKKRSFAPSTPLTGRRYLREKEAVITPVASATQSVSRLQSIVAGLKNAPSDQL 412
LQQHF+K ++ STPLTG RY++E +TPV++AT S+SRL +++ GL+NAPS++L
Sbjct: 385 NILQQHFDKSKALRISTPLTGVRYIKENSPCVTPVSTATHSLSRLHTMLTGLRNAPSEKL 444
Query: 413 INIFESCVRNPVENIMKILKGIGETFCQHYTQSTDEQPGSHIDFAVNRLKLAEILYYKIL 472
I +C R+P + I LK + E + QH+ Q ++ + A + AE+LYYK+L
Sbjct: 445 EQILRTCSRDPTQAIANRLKEMFEIYSQHF-QPDEDFSNCAKEIASKHFRFAEMLYYKVL 503
Query: 473 ETVMVQETRRLHGMDMSVLLEQDIFHRSLMACCLEIVLFAYSSPRTFPWIIEVLNLQPFY 532
E+V+ QE +RL MD+S +LEQD FHRSL+ACCLE+V F+Y P FP+I E+ ++ ++
Sbjct: 504 ESVIEQEQKRLGDMDLSGILEQDAFHRSLLACCLEVVTFSYKPPGNFPFITEIFDVPLYH 563
Query: 533 FYKVIEVVIRSEEGLSRDMVKHLNSIEEQILESLAWSHDSALWEALQVSANKVPTCEEVI 592
FYKVIEV IR+E+GL R++VKHLN IEEQIL+ LAW +S LWE ++ + N+VPTCEEV+
Sbjct: 564 FYKVIEVFIRAEDGLCREVVKHLNQIEEQILDHLAWKPESPLWEKIRDNENRVPTCEEVM 623
Query: 593 FPNNFETGNGGNVQGHLPLMPMSPLMHPRVKEVRTDSGSLRRDMQPLSPISVHERYSSPT 652
P N E + + G SPL RV EVR D+G L R + SP ++++RYSSP
Sbjct: 624 PPQNLERADEICIAG-------SPLTPRRVTEVRADTGGLGRSI--TSPTTLYDRYSSPP 674
Query: 653 AGSAKRRLFGE-DPPKEMLMDKIITEGTKLKIAPSSSITAENVSI--LPGQTLLTMATAP 709
A + +RRLF E D P + + + P +++ E VS+ +PGQTL+TMATA
Sbjct: 675 ASTTRRRLFVENDSPSDGGTPGRMPPQPLVNAVPVQNVSGETVSVTPVPGQTLVTMATAT 734
Query: 710 VTGTTGHKVTIPLHGVANDAGEITLIPLSMNTNQESK--VKSPVSLTAHSLIGA------ 761
VT G VTIP+ G+AN+ G IT P+ +N +++ S L+A +L G+
Sbjct: 735 VTANNGQTVTIPVQGIANENGGITFFPVQVNVGGQAQAVTGSIQPLSAQALAGSLSSQQV 794
Query: 762 ----------------SPKQTNLTKAQEVHSTGINRPKRTGSLALFYRKVYHLASVRLRD 805
SP + Q V S+ NRP++T SL+LF+RKVYHLA+VRLRD
Sbjct: 795 TGTTLQVPGQVAIQQISPGGQQQKQGQSVTSSS-NRPRKTSSLSLFFRKVYHLAAVRLRD 853
Query: 806 LCLKLDVSNELRRKIWTCFEFTLVHCPDLMKDRHLDQLLLCAFYIMAKVTKEERTFQEIM 865
LC KLD+S+ELR+KIWTCFEF+++ CP+LM DRHLDQLL+CA Y+MAKVTKE+++FQ IM
Sbjct: 854 LCAKLDISDELRKKIWTCFEFSIIQCPELMMDRHLDQLLMCAIYVMAKVTKEDKSFQNIM 913
Query: 866 KSYRNQPQANSHVYRSVLLK----------SIPREVVAYNKNINDDFEMIDCD----LED 911
+ YR QPQA S VYRSVL+K S R +N D D
Sbjct: 914 RCYRTQPQARSQVYRSVLIKGKRKRRNSGSSDSRSHQNSPTELNKDRTSRDSSPVMRSSS 973
Query: 912 ATKTPDCSSGP-------------VKEERGDLIKFYNTIYVGRVKSFALKYDLANQDHMM 958
P SS P +EERGDLI+FYN IY+ ++K+FA+KY AN M
Sbjct: 974 TLPVPQPSSAPPTPTRLTGANSDMEEEERGDLIQFYNNIYIKQIKTFAMKYSQAN----M 1029
Query: 959 DAPPLSPFPHIKQQPGSPRRI--SQQHSIYISPHKNGSGLTPRSALLYKFNGSPSK 1012
DAPPLSP+P ++ GSPRRI SQ H +YISPHKN + L+PR + Y F+ SPSK
Sbjct: 1030 DAPPLSPYPFVR--TGSPRRIQLSQNHPVYISPHKNETMLSPREKIFYYFSNSPSK 1083
>gi|108773787 retinoblastoma 1 [Homo sapiens]
Length = 928
Score = 181 bits (459), Expect = 3e-45
Identities = 157/565 (27%), Positives = 257/565 (45%), Gaps = 91/565 (16%)
Query: 86 SLTRILRSAKLSLIQFFSKMKKWMDMSNLPQEFRERIERLERNFEVSTVIFKKYEPIFLD 145
+ T + ++ ++S+ +FF+ +K+ +D S + + RL + ++V +F K E
Sbjct: 116 TFTELQKNIEISVHKFFNLLKE-IDTST---KVDNAMSRLLKKYDVLFALFSKLERTCEL 171
Query: 146 IFQNPYEEPPKLPRSRKQRRIPCSVKDLFNFCWTLFVYTKGNFRMIGDDLVNSYHLLLCC 205
I+ P S I ++ + W F+ KG + DDLV S+ L+LC
Sbjct: 172 IYLTQ-------PSSSISTEINSAL--VLKVSWITFLLAKGEVLQMEDDLVISFQLMLCV 222
Query: 206 LDLIFANAIMCPNRQDLLNPSFKGLPSDFHTADFTAS-------------EEPPCIIAVL 252
LD + P LL +K + + T E II VL
Sbjct: 223 LDYFIK---LSPPM--LLKEPYKTAVIPINGSPRTPRRGQNRSARIAKQLENDTRIIEVL 277
Query: 253 CELHDGLLVEAKGIKEHYFKPYISKLFDRKILKGECLLDLSSFTDNSKAVNKEYEEYVLT 312
C+ H+ + E K + YFK +I + ++ L ++ + ++K YEE L
Sbjct: 278 CKEHECNIDEVKNV---YFKNFIPFMNSLGLVTSNGLPEVEN-------LSKRYEEIYLK 327
Query: 313 VGDFDERIFLGADAEEEIGTPRKF-TRDTP-LGKLTAQANVEYNLQQHFEKKRSFAPSTP 370
D D R+FL D + + F T+ TP L + NV + H
Sbjct: 328 NKDLDARLFLDHDKTLQTDSIDSFETQRTPRKSNLDEEVNV---IPPH------------ 372
Query: 371 LTGRRYLREKEAVITPVASATQSVSRLQSIVAGLKNAPSDQLINIFESCVRNPVENIMKI 430
TPV + ++ +L I+ + PS+ LI+ F +C NP E+I+K
Sbjct: 373 --------------TPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKR 418
Query: 431 LKGIGETFCQHYTQSTDEQPGSHIDFAVNRLKLAEILYYKILETVMVQETRRLHGMDMSV 490
+K IG F + + ++ + ++ R KL LYY+++E+++ E RL + S
Sbjct: 419 VKDIGYIFKEKFAKAVGQ---GCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSK 475
Query: 491 LLEQDIFHRSLMACCLEIVLFAYS----------SPRTFPWIIEVLNLQPFYFYKVIEVV 540
LL +IFH SL+AC LE+V+ YS + +FPWI+ VLNL+ F FYKVIE
Sbjct: 476 LLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESF 535
Query: 541 IRSEEGLSRDMVKHLNSIEEQILESLAWSHDSALWEALQVSANKVPTCE--EVIFPNNFE 598
I++E L+R+M+KHL E +I+ESLAW DS L++ ++ S ++ + E P N
Sbjct: 536 IKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGPTDHLESACPLNLP 595
Query: 599 TGNGGNVQGHLPLMPMSPLMHPRVK 623
N M +SP+ P+ K
Sbjct: 596 LQNNHTAAD----MYLSPVRSPKKK 616
Score = 111 bits (277), Expect = 4e-24
Identities = 91/293 (31%), Positives = 133/293 (45%), Gaps = 66/293 (22%)
Query: 735 IPLSMNTNQESKVKSPVSLTAHSLIGASPKQTNLTKAQEVHSTGI---NRPKRTGSLALF 791
+PL N SPV S + N T E +T +P ++ SL+LF
Sbjct: 594 LPLQNNHTAADMYLSPVRSPKKK---GSTTRVNSTANAETQATSAFQTQKPLKSTSLSLF 650
Query: 792 YRKVYHLASVRLRDLCLKLDVSN-ELRRKIWTCFEFTLVHCPDLMKDRHLDQLLLCAFYI 850
Y+KVY LA +RL LC +L + EL IWT F+ TL + +LM+DRHLDQ+++C+ Y
Sbjct: 651 YKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYG 710
Query: 851 MAKVTKEERTFQEIMKSYRNQPQANSHVYRSVLLKSIPREVVAYNKNINDDFEMIDCDLE 910
+ KV + F+ I+ +Y++ P A ++ VL+K
Sbjct: 711 ICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK------------------------- 745
Query: 911 DATKTPDCSSGPVKEERGDLIKFYNTIYVGRVKSFALKYDLANQDHMMDAPPLSPFPHIK 970
+EE +I FYN++++ R+K+ L+Y P LSP PHI
Sbjct: 746 -------------EEEYDSIIVFYNSVFMQRLKTNILQYASTR------PPTLSPIPHIP 786
Query: 971 QQ----PGSPRRISQQHSIYI----SPHKNGSGL------TPRSALLYKFNGS 1009
+ P SP RI +IYI SP+K GL TPRS +L S
Sbjct: 787 RSPYKFPSSPLRI-PGGNIYISPLKSPYKISEGLPTPTKMTPRSRILVSIGES 838
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 35.8 bits (81), Expect = 0.21
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 679 TKLKIAPSSSITAENVSILP---------GQTLLTMATAPVTGTTGHKVTIPLHGVAN-D 728
T L + +SS + + + LP G T+ T+P + +TGH +P+ G+++
Sbjct: 3695 TPLPVTDASSASTGHATPLPVTIPSSVSTGDTMPLPVTSPSSASTGHATPLPVTGLSSAS 3754
Query: 729 AGEITLIPLSMNTNQESKVKSPVSLTAHSLIGASPKQTNLTKAQEVHS 776
G+ T +P++ ++ ++ +P+ +T S AS T +V S
Sbjct: 3755 TGDTTPLPVTDTSSASTRHATPLPVTDTS--SASTDDTTRLPVTDVSS 3800
Score = 32.3 bits (72), Expect = 2.3
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 679 TKLKIAPSSSITAENVSILPGQTLLTMATAPVTGTTGHKVTIPLHGVAN-DAGEITLIPL 737
T L + +SS++ + + LP T+P + +TGH +P+ ++ G+ T +P+
Sbjct: 3871 TPLPVTSTSSVSTGHATPLP-------VTSPSSASTGHATPVPVTSTSSASTGDTTPLPV 3923
Query: 738 SMNTNQESKVKSPVSLTAHSLIGASPKQTNLTKAQEVHSTGINRPKRTGSLA 789
+ ++ + +P+ +T+ S T STG P SL+
Sbjct: 3924 TNASSLSTGHATPLHVTSPSSASRGDTSTLPVTDASSASTGHATPLPLTSLS 3975
Score = 30.8 bits (68), Expect = 6.7
Identities = 17/77 (22%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 679 TKLKIAPSSSITAENVSILPGQTLLTMATAPVTGTTGHKVTIPLHGVANDA-GEITLIPL 737
T L + +SS++ + + LP T+P + +TGH +P+ ++++ G +T +P+
Sbjct: 991 TPLHVTDASSVSTGHATPLP-------VTSPSSVSTGHTTPLPVTDTSSESTGHVTPLPV 1043
Query: 738 SMNTNQESKVKSPVSLT 754
+ ++ + +P+ +T
Sbjct: 1044 TSFSSASTGDSTPLPVT 1060
Score = 30.8 bits (68), Expect = 6.7
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 679 TKLKIAPSSSITAENVSILP---------GQTLLTMATAPVTGTTGHKVTIPLHGVAN-D 728
T L + +SS + + + LP G T T+P + +TGH +P+ ++
Sbjct: 2943 TPLPVTDTSSASTGHATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHTTPLPVTDTSSAS 3002
Query: 729 AGEITLIPLSMNTNQESKVKSPVSLT 754
G+ T +P++ ++ + +P+ +T
Sbjct: 3003 TGQATALPVTSTSSASTGDTTPLPVT 3028
Score = 30.8 bits (68), Expect = 6.7
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 679 TKLKIAPSSSITAENVSILP---------GQTLLTMATAPVTGTTGHKVTIPLHGVAN-D 728
T+L + SS + + LP G T+ T+P + +TGH +P+ ++
Sbjct: 3247 TRLPVTDISSASTGQATPLPVTNTSSVSTGDTMPLPVTSPSSASTGHATPLPVTSTSSAS 3306
Query: 729 AGEITLIPLSMNTNQESKVKSPVSLT 754
G T +P++ ++ + +P+ +T
Sbjct: 3307 TGHATPVPVTSTSSASTGHTTPLPVT 3332
Score = 30.4 bits (67), Expect = 8.8
Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 25/176 (14%)
Query: 627 TDSGSLRRDMQPLSPISVHERYSSPTAGSAKRRLFGEDPPKEMLMDKIITEG--TKLKIA 684
TD+ S+ D P+++ P+A S G P + + G T L +
Sbjct: 1220 TDASSVSTDHATSLPVTI------PSAAST-----GHTTPLPVTDTSSASTGQATSLLVT 1268
Query: 685 PSSSITAENVSILP---------GQTLLTMATAPVTGTTGHKVTIPLHGVAN-DAGEITL 734
+SS++ + + LP G T+P + +TGH +P+ +++ G+
Sbjct: 1269 DTSSVSTGDTTPLPVTSTSSASTGHVTPLHVTSPSSASTGHATPLPVTSLSSASTGDTMP 1328
Query: 735 IPLSMNTNQESKVKSPVSLT-AHSLIGASPKQTNLTKAQEVHSTGINRPKRTGSLA 789
+P++ ++ + +P+ +T A S+ ++T A STG P SL+
Sbjct: 1329 LPVTSPSSASTGDTTPLPVTDASSVSTGHTTPLHVTDASSA-STGQATPLPVTSLS 1383
>gi|7661844 coiled-coil domain containing 22 [Homo sapiens]
Length = 627
Score = 33.9 bits (76), Expect = 0.80
Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 12/191 (6%)
Query: 773 EVHSTGINRPKRTGSLALFYRKVYHLASVRLRDLCLKLDVSNELRRKIWTCFEFTLVHCP 832
E + ++ +R +L L R V L L+L V N +R I ++ P
Sbjct: 368 ECRHSKLSTAEREQALRLKSRAVELLPDGTANLAKLQLVVENSAQRVIHLAGQWEKHRVP 427
Query: 833 DLMKDRHLDQLLLCAFYIMAKVTKEERTFQEIMKSYRNQPQANSHVYRSVL--LKSIPRE 890
L + RHL +L C ++ E + + +++ + + VY+ ++ L+++PR+
Sbjct: 428 LLAEYRHLRKLQDCRELESSRRLAEIQELHQSVRAAAEEARRKEEVYKQLMSELETLPRD 487
Query: 891 V--VAYNKNINDDFEMIDCDLEDATKTPDCSSGPVKEERGDLIKFYNTIYVGRVKSFALK 948
V +AY + I + I E+ TK + + +L K N++ ++FA+
Sbjct: 488 VSRLAYTQRILEIVGNIRKQKEEITK--------ILSDTKELQKEINSLSGKLDRTFAVT 539
Query: 949 YDLANQDHMMD 959
+L +D D
Sbjct: 540 DELVFKDAKKD 550
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 32.0 bits (71), Expect = 3.0
Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 15/148 (10%)
Query: 639 LSPISVHERYSSPTAGSAKRRLFG-------EDPPKEMLMDKIITEGTKLKIAPSSSITA 691
L+P SP GSA+ G PK + T+ + + T+
Sbjct: 1129 LTPQMTATHPPSPDPGSARSTWLGILSSSPSSPTPKVTMSSTFSTQRVTTSMIMDTVETS 1188
Query: 692 E-NVSILPGQTLLTMATAPVTGTTGHKVTIPLH----GVANDAGEITLIPLSMNTNQESK 746
N+ LP T LT + P +G G +PL + +A E L LS T ES
Sbjct: 1189 RWNMPNLPSTTSLTPSNIPTSGAIGKSTLVPLDTPSPATSLEASEGGLPTLS--TYPEST 1246
Query: 747 VKSPVSLTAHSLIGASPKQTNLTKAQEV 774
+ L AH+ SP LT A V
Sbjct: 1247 NTPSIHLGAHA-SSESPSTIKLTMASVV 1273
>gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]
Length = 1073
Score = 32.0 bits (71), Expect = 3.0
Identities = 68/317 (21%), Positives = 116/317 (36%), Gaps = 35/317 (11%)
Query: 537 IEVVIRSEEGLSRDMVKHLNSIEEQILESLAWSH--DSALWEALQVSANKVPTCEEVIFP 594
I I S ++ D + + ++E E L+ S D +L A + + + EE +
Sbjct: 121 ISASISSNNSIAEDTESY-DDLDESHTEDLSSSEILDVSLSRATDLGEPERSSSEETL-- 177
Query: 595 NNF-ETGNGGNVQGHLPLMPMSPLMHPRVKEVRTDSGS----LRRDMQPLSPISVHERYS 649
NNF E G V + P +P L H + V + + L Q + +
Sbjct: 178 NNFQEAETPGAVSPNQPHLPQPHLPHLPQQNVVINGNAHPHHLHHHHQIHHGHHLQHGHH 237
Query: 650 SPTAGSAKRRLFGEDPPKEMLMDKIITEGTKLKIAPSSSITAENVSILPGQTLLTMATAP 709
P+ + PP + K+ T G+ I P + +A + S P + M
Sbjct: 238 HPSHVAVASASITGGPPSSPVSRKLSTTGSSDSITPVAPTSAVSSSGSPASVMTNMRAPS 297
Query: 710 VTGTTGHKVTIPLHGVANDAGEITLIPLSMNTNQESKVKSPVSLTAHSL-----IGASPK 764
TG G V N IT + S N N S + V+++ ++ + P
Sbjct: 298 TTGGIGINSVTGTSTVNN--VNITAVG-SFNPNVTSSMLGNVNISTSNIPSAAGVSVGPG 354
Query: 765 QTN--------------LTKAQEVHSTGINRPKRTGSLALFYRKVYHLASVRLRDLCLKL 810
T+ ++ + V S TG ++ + + R R +KL
Sbjct: 355 VTSGVNVNILSGMGNGTISSSAAVSSVPNAAAGMTGGSVSSQQQQPTVNTSRFR--VVKL 412
Query: 811 DVSNE-LRRKIWTCFEF 826
D S+E ++ WTC EF
Sbjct: 413 DSSSEPFKKGRWTCTEF 429
>gi|125858485 hypothetical protein LOC80209 isoform 2 [Homo sapiens]
Length = 922
Score = 31.6 bits (70), Expect = 4.0
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 684 APSSSITAENVSILPGQTLLTMATAPVTGTTGHKVTIPLHG-VANDAGEITLIPLSMNTN 742
APS+ T + S PG L +PV +T +T+P+ +A A T +P+S ++
Sbjct: 498 APSAIPTPQRTST-PGLALFPGLPSPVANSTSTPLTLPVQSPLATAASASTSVPVSCGSS 556
Query: 743 QESKVKSPVSLTAHSLIGASPKQTNL 768
S ++ P T+ I ++P T L
Sbjct: 557 -ASLLRGPHPGTSDLHISSTPAATTL 581
>gi|125656155 hypothetical protein LOC80209 isoform 1 [Homo sapiens]
Length = 944
Score = 31.6 bits (70), Expect = 4.0
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 684 APSSSITAENVSILPGQTLLTMATAPVTGTTGHKVTIPLHG-VANDAGEITLIPLSMNTN 742
APS+ T + S PG L +PV +T +T+P+ +A A T +P+S ++
Sbjct: 520 APSAIPTPQRTST-PGLALFPGLPSPVANSTSTPLTLPVQSPLATAASASTSVPVSCGSS 578
Query: 743 QESKVKSPVSLTAHSLIGASPKQTNL 768
S ++ P T+ I ++P T L
Sbjct: 579 -ASLLRGPHPGTSDLHISSTPAATTL 603
>gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo
sapiens]
Length = 1835
Score = 31.6 bits (70), Expect = 4.0
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 640 SPISVHERYSSPTAGSAKRRLFGEDPPKEMLMDKIITEGTKLKIAPSSSITA---ENVSI 696
SP V++ S+ AG + G+ P +++L+ + + + PS + N+ I
Sbjct: 1094 SPQVVYQVASNQAAGFGVQ---GQTPAQQLLVGQQNVQLVPSAMPPSGGVQTVPISNLQI 1150
Query: 697 LPGQTLLTMATAPVTGTTGHKVTIPLHGVANDAGEITLIPLSMNTNQESKVKSPVSLT 754
LPG + GT+G++VTI + + P +++ +++ +P +T
Sbjct: 1151 LPGPLISNSPATIFQGTSGNQVTITV------VPNTSFAPATVSQGNATQLIAPAGIT 1202
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 31.2 bits (69), Expect = 5.2
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 13/125 (10%)
Query: 679 TKLKIAPSSSITAENVSILPG-------QTLLTMATAPVTGTTGHKVTIPL---HGVAND 728
T L +AP S ++ LP Q +M T P+ + P+ H + +
Sbjct: 339 TPLPLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSP 398
Query: 729 AGEITLIPLSMNTNQES-KVKSPVSLTAHSLIGASPKQT--NLTKAQEVHSTGINRPKRT 785
+ + PL++++ Q + + SP HS + SP+QT +LT ST + P
Sbjct: 399 SLQAPPSPLALSSLQATTSLGSPTLQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPLQ 458
Query: 786 GSLAL 790
L+L
Sbjct: 459 APLSL 463
>gi|61102725 la related protein isoform 2 [Homo sapiens]
Length = 1096
Score = 31.2 bits (69), Expect = 5.2
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 352 EYNLQQHFEKKRSFAPSTPLTGRRYLREKEAVITPVASATQSVSRLQSIVAGLKNAPSD 410
E+ +QH++K+ AP +P +TPV + T+ VS L+++ GL + D
Sbjct: 504 EFVPRQHYQKETESAPGSP-----------RAVTPVPTKTEEVSNLKTLPKGLSASLPD 551
>gi|39725634 la related protein isoform 1 [Homo sapiens]
Length = 1019
Score = 31.2 bits (69), Expect = 5.2
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 352 EYNLQQHFEKKRSFAPSTPLTGRRYLREKEAVITPVASATQSVSRLQSIVAGLKNAPSD 410
E+ +QH++K+ AP +P +TPV + T+ VS L+++ GL + D
Sbjct: 427 EFVPRQHYQKETESAPGSP-----------RAVTPVPTKTEEVSNLKTLPKGLSASLPD 474
>gi|4503515 eukaryotic translation initiation factor 3, subunit 3
gamma, 40kDa [Homo sapiens]
Length = 352
Score = 30.8 bits (68), Expect = 6.7
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 786 GSLALFYRKVYHLASVRLRDLCLKLDVSNELRRKIWTCFEFTLVHCPDLMKDRHLDQLLL 845
GSL+L K Y L +L ++C + D S E +K FE+ P ++K+ HL +L+
Sbjct: 160 GSLSL---KAYRLTP-KLMEVCKEKDFSPEALKKANITFEYMFEEVPIVIKNSHLINVLM 215
>gi|24308227 zinc finger protein 687 [Homo sapiens]
Length = 1237
Score = 30.4 bits (67), Expect = 8.8
Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 18/208 (8%)
Query: 580 VSANKVPTCEEVIFPNNFETGNGGNVQGHLPLMPMSPLMHPRVKEVRTDSGSLRRDMQPL 639
+++ KVP C+ P E + G V P P SP + ++ +PL
Sbjct: 273 LASPKVPVCQ----PLKEEDDDEGPVDKSSPGSPQSPSSGAEAADEDSNDSPASSSSRPL 328
Query: 640 SPISVHERYSSPTAGSAKRRLF----GEDPPKEMLMDKIITEGTKLKIAPSSSITAENVS 695
V + + G+ R + DPP + + E + LK++P++ T+E
Sbjct: 329 K---VRIKTIKTSCGNITRTVTQVPSDPDPPAPLAEGAFLAEASLLKLSPATP-TSEGPK 384
Query: 696 ILPGQ----TLLTMATAPVTGTTGHKVTIPLHGVANDAGEITLIPLSMNTNQESKVKSPV 751
++ Q T L PV T + + A+ A + ++P T+ + K+ +
Sbjct: 385 VVSVQLGDGTRLKGTVLPV--ATIQNASTAMLMAASVARKAVVLPGGTATSPKMIAKNVL 442
Query: 752 SLTAHSLIGASPKQTNLTKAQEVHSTGI 779
L +L A + T Q+V+ +
Sbjct: 443 GLVPQALPKADGRAGLGTGGQKVNGASV 470
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,079,456
Number of Sequences: 37866
Number of extensions: 1794790
Number of successful extensions: 4485
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4432
Number of HSP's gapped (non-prelim): 53
length of query: 1014
length of database: 18,247,518
effective HSP length: 112
effective length of query: 902
effective length of database: 14,006,526
effective search space: 12633886452
effective search space used: 12633886452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.