Search of human proteins with 34304322

Search of human proteins with 34304322

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|34304322 mitochondrial ribosomal protein L45 [Homo sapiens]
         (306 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|34304322 mitochondrial ribosomal protein L45 [Homo sapiens]        632   0.0  
gi|130980075 centromere protein J [Homo sapiens]                       33   0.24 
gi|54607104 hypothetical protein LOC56941 [Homo sapiens]               32   0.70 
gi|54607106 hypothetical protein LOC56941 [Homo sapiens]               32   0.70 
gi|56118221 amyloid beta (A4) precursor protein-binding, family ...    31   1.6  
gi|95147333 phospholipase C, beta 2 [Homo sapiens]                     29   4.6  
gi|155030232 proline, glutamic acid and leucine rich protein 1 [...    28   7.8  
gi|62241042 glutamyl-prolyl tRNA synthetase [Homo sapiens]             28   7.8  
gi|11342664 myxovirus resistance protein 2 [Homo sapiens]              28   7.8  
gi|167234405 hypothetical protein LOC284325 [Homo sapiens]             28   7.8  

>gi|34304322 mitochondrial ribosomal protein L45 [Homo sapiens]
          Length = 306

 Score =  632 bits (1631), Expect = 0.0
 Identities = 306/306 (100%), Positives = 306/306 (100%)

Query: 1   MAAPIPQGFSCLSRVLGWWSRQPVLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHA 60
           MAAPIPQGFSCLSRVLGWWSRQPVLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHA
Sbjct: 1   MAAPIPQGFSCLSRVLGWWSRQPVLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHA 60

Query: 61  RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV 120
           RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV
Sbjct: 61  RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV 120

Query: 121 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKT 180
           SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKT
Sbjct: 121 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKT 180

Query: 181 VRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPK 240
           VRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPK
Sbjct: 181 VRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPK 240

Query: 241 DVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEA 300
           DVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEA
Sbjct: 241 DVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEA 300

Query: 301 QKPQLA 306
           QKPQLA
Sbjct: 301 QKPQLA 306


>gi|130980075 centromere protein J [Homo sapiens]
          Length = 1338

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 60/293 (20%), Positives = 109/293 (37%), Gaps = 68/293 (23%)

Query: 68   PPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQVSIRRIK- 126
            P  KSD   HL     +  +   P GD   S + +E +IE    ++K  A   S+ +++ 
Sbjct: 875  PKPKSDS--HLGNELKLNISQDQPPGDNARSQVLREKIIELETEIEKFKAENASLAKLRI 932

Query: 127  --------------DYDAN-----FKIKDFP-------EKAKDIFIE----AHLCLNNSD 156
                          D++        +I++F        +K + +F +    A    +  +
Sbjct: 933  ERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRKLQKERKVFEKYTTAARTFPDKKE 992

Query: 157  HDRLHTLVTEHCFPDMTWDIKYKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRM 216
             + + TL  +    D+  D+K K  +WS   S   S +       M+ + N   +  +++
Sbjct: 993  REEIQTLKQQ--IADLREDLKRKETKWSSTHSRLRSQI------QMLVRENTDLREEIKV 1044

Query: 217  HTRQTLAIYDRFGRLMYGQEDVPKDVL----------------EYVVFEKQLTNPYGSWR 260
              R  L  + R   +    E   KD L                +   ++K      G+  
Sbjct: 1045 MERFRLDAWKRAEAIESSLEVEKKDKLANTSVRFQNSQISSGTQVEKYKKNYLPMQGNPP 1104

Query: 261  MHTKIVPPW----------APPKQPILKTVMIPGPQLKPEEEYEEAQGEAQKP 303
              +K  PP           A P++P L+ +  P P+ K EEE ++ QGE   P
Sbjct: 1105 RRSKSAPPRDLGNLDKGQAASPREP-LEPLNFPDPEYKEEEEDQDIQGEISHP 1156


>gi|54607104 hypothetical protein LOC56941 [Homo sapiens]
          Length = 354

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 14/93 (15%)

Query: 45  IYQPKFKTEKEFMQHARKAGLVIPPEKSDR---SIHLACTAGIFDAYVPPEGDARISSL- 100
           IY P+ KTEK     +   G    PE  ++   +  L   AGIFD + PPEG   + S  
Sbjct: 142 IYFPQIKTEK-----SGSIGAADSPENWEKVWDNWRLLTMAGIFDCWEPPEGGDVLYSYT 196

Query: 101 -----SKEGLIERTERMKKTMASQVSIRRIKDY 128
                S +GL +   RM   +  + ++ +  D+
Sbjct: 197 IITVDSCKGLSDIHHRMPAILDGEEAVSKWLDF 229


>gi|54607106 hypothetical protein LOC56941 [Homo sapiens]
          Length = 354

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 14/93 (15%)

Query: 45  IYQPKFKTEKEFMQHARKAGLVIPPEKSDR---SIHLACTAGIFDAYVPPEGDARISSL- 100
           IY P+ KTEK     +   G    PE  ++   +  L   AGIFD + PPEG   + S  
Sbjct: 142 IYFPQIKTEK-----SGSIGAADSPENWEKVWDNWRLLTMAGIFDCWEPPEGGDVLYSYT 196

Query: 101 -----SKEGLIERTERMKKTMASQVSIRRIKDY 128
                S +GL +   RM   +  + ++ +  D+
Sbjct: 197 IITVDSCKGLSDIHHRMPAILDGEEAVSKWLDF 229


>gi|56118221 amyloid beta (A4) precursor protein-binding, family B,
           member 1 interacting protein [Homo sapiens]
          Length = 666

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 266 VPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEAQKPQLA 306
           +PP  PP  P+L   + P P     +E EEAQ +A K +LA
Sbjct: 128 LPP--PPADPVLDLPLPPPPPEPLSQEEEEAQAKADKIKLA 166


>gi|95147333 phospholipase C, beta 2 [Homo sapiens]
          Length = 1185

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 14/83 (16%)

Query: 24  VLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHARKAGLVIPPEKSDRSIHLACTAG 83
           +  +  A   P  TK+  T      KF  +K+  + +R   L+ PP + D+        G
Sbjct: 224 IFTSYHAKAKPYMTKEHLT------KFINQKQ--RDSRLNSLLFPPARPDQ------VQG 269

Query: 84  IFDAYVPPEGDARISSLSKEGLI 106
           + D Y P   +A+   LS EG++
Sbjct: 270 LIDKYEPSGINAQRGQLSPEGMV 292


>gi|155030232 proline, glutamic acid and leucine rich protein 1
           [Homo sapiens]
          Length = 1130

 Score = 28.5 bits (62), Expect = 7.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 266 VPPWAPPKQPILKTVMIPGPQLKPE 290
           +PP  PP  P+   V +P PQL PE
Sbjct: 839 LPPPPPPPPPVPGPVTLPPPQLVPE 863


>gi|62241042 glutamyl-prolyl tRNA synthetase [Homo sapiens]
          Length = 1512

 Score = 28.5 bits (62), Expect = 7.8
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 259 WRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEAQKPQL 305
           W  + K++ P AP    +LK  +IP    + +EE +E     + P++
Sbjct: 493 WAFNKKVIDPVAPRYVALLKKEVIPVNVPEAQEEMKEVAKHPKNPEV 539


>gi|11342664 myxovirus resistance protein 2 [Homo sapiens]
          Length = 715

 Score = 28.5 bits (62), Expect = 7.8
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 54  KEFMQHARKAGLVIPPEKSDRSIHLACTAGIFDAY-VPPEGDARISSLSKEGLIER-TER 111
           K+++Q  +   LV+ P   D    +A T  +  A+ V PEGD  I  L+K  L++R TE+
Sbjct: 250 KKYIQRQQTINLVVVPCNVD----IATTEALSMAHEVDPEGDRTIGILTKPDLMDRGTEK 305

Query: 112 MKKTMASQVSIRRIKDY 128
               +   ++    K Y
Sbjct: 306 SVMNVVRNLTYPLKKGY 322


>gi|167234405 hypothetical protein LOC284325 [Homo sapiens]
          Length = 351

 Score = 28.5 bits (62), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 267 PPWAPPKQPILKTVMIPGPQLKP 289
           PP +PPK P+ +   IP P L P
Sbjct: 11  PPISPPKTPVPQASSIPSPPLPP 33


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,899,186
Number of Sequences: 37866
Number of extensions: 590740
Number of successful extensions: 1549
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1541
Number of HSP's gapped (non-prelim): 12
length of query: 306
length of database: 18,247,518
effective HSP length: 102
effective length of query: 204
effective length of database: 14,385,186
effective search space: 2934577944
effective search space used: 2934577944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.