Search of human proteins with 34147637

Search of human proteins with 34147637

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|34147637 COP9 signalosome subunit 6 [Homo sapiens]
         (327 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|34147637 COP9 signalosome subunit 6 [Homo sapiens]                 654   0.0  
gi|25777615 proteasome 26S non-ATPase subunit 7 [Homo sapiens]        107   1e-23
gi|4503519 eukaryotic translation initiation factor 3, subunit 5...   100   1e-21
gi|169162584 PREDICTED: hypothetical protein LOC100132108 [Homo ...    43   4e-04
gi|169161813 PREDICTED: similar to hCG1644176 [Homo sapiens]           41   0.001
gi|4503515 eukaryotic translation initiation factor 3, subunit 3...    38   0.014
gi|38027923 COP9 signalosome subunit 5 [Homo sapiens]                  37   0.024
gi|4506783 Sin3A-associated protein, 30kDa [Homo sapiens]              34   0.20 
gi|151301228 formin binding protein 3 [Homo sapiens]                   33   0.45 
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs...    33   0.45 
gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precurs...    33   0.45 
gi|5031613 growth differentiation factor 11 precursor [Homo sapi...    31   1.3  
gi|50083279 centrosome protein 4 [Homo sapiens]                        31   1.7  
gi|169204514 PREDICTED: similar to hCG2040283 [Homo sapiens]           30   2.2  
gi|169205160 PREDICTED: similar to hCG2040283 [Homo sapiens]           30   2.2  
gi|169204408 PREDICTED: hypothetical protein LOC390282 [Homo sap...    30   2.2  
gi|60498973 myelin transcription factor 1-like [Homo sapiens]          28   8.5  

>gi|34147637 COP9 signalosome subunit 6 [Homo sapiens]
          Length = 327

 Score =  654 bits (1688), Expect = 0.0
 Identities = 327/327 (100%), Positives = 327/327 (100%)

Query: 1   MAAAAAAAAATNGTGGSSGMEVDAAVVPSVMACGVTGSVSVALHPLVILNISDHWIRMRS 60
           MAAAAAAAAATNGTGGSSGMEVDAAVVPSVMACGVTGSVSVALHPLVILNISDHWIRMRS
Sbjct: 1   MAAAAAAAAATNGTGGSSGMEVDAAVVPSVMACGVTGSVSVALHPLVILNISDHWIRMRS 60

Query: 61  QEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELE 120
           QEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELE
Sbjct: 61  QEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELE 120

Query: 121 FLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEAT 180
           FLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEAT
Sbjct: 121 FLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEAT 180

Query: 181 MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILE 240
           MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILE
Sbjct: 181 MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILE 240

Query: 241 YVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCN 300
           YVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCN
Sbjct: 241 YVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCN 300

Query: 301 TMNQFVNKFNVLYDRQGIGRRMRGLFF 327
           TMNQFVNKFNVLYDRQGIGRRMRGLFF
Sbjct: 301 TMNQFVNKFNVLYDRQGIGRRMRGLFF 327


>gi|25777615 proteasome 26S non-ATPase subunit 7 [Homo sapiens]
          Length = 324

 Score =  107 bits (268), Expect = 1e-23
 Identities = 70/273 (25%), Positives = 141/273 (51%), Gaps = 10/273 (3%)

Query: 41  VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI-- 98
           V +HPLV+L++ DH+ R+  + G   +V+G L+G  + + ++V NSF +     ++    
Sbjct: 9   VVVHPLVLLSVVDHFNRI-GKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSV 67

Query: 99  -IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPM 157
             +D +Y       FK+V      +GWY TG     +DI +++ +     + + + ++  
Sbjct: 68  WFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVK 127

Query: 158 TKHTDLPVSVFESVIDIING--EATMLFAELTYTLATEEAERIGVDHVAR-MTATGSGEN 214
            K   LP   + SV ++ +     +  F  +T  +  EEAE +GV+H+ R +  T  G  
Sbjct: 128 PKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVG-- 185

Query: 215 STVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDK 274
            T+++ +  Q   +K L+S++  I  Y++    G++P NH+I+ +   + + LP +S  +
Sbjct: 186 -TLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQE 244

Query: 275 FKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVN 307
           F   FY + ND  ++ YL ++ ++   ++  +N
Sbjct: 245 FVKAFYLKTNDQMVVVYLASLIRSVVALHNLIN 277


>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
           epsilon, 47kDa [Homo sapiens]
          Length = 357

 Score =  100 bits (250), Expect = 1e-21
 Identities = 77/307 (25%), Positives = 141/307 (45%), Gaps = 8/307 (2%)

Query: 2   AAAAAAAAATNGTGGSSGM--EVDAAVVPSVMACG-VTGSVSVALHPLVILNISDHWIRM 58
           AAAAAA AA   T  S+    +  A  +P     G   G   V LHP+++ +I D + R 
Sbjct: 50  AAAAAATAAPGQTPASAQAPAQTPAPALPGPALPGPFPGGRVVRLHPVILASIVDSYERR 109

Query: 59  RSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKE 118
                R   VIG L+G  +  ++EV N F +  +  E+++ +D E+     E  K+V   
Sbjct: 110 NEGAAR---VIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPN 166

Query: 119 LEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGE 178
              LGWY TG       + +H+       +P+ L ++   ++  + +  + S +  + G 
Sbjct: 167 ELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGR 226

Query: 179 AT-MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKL 237
              ++F  LT   A  + ERIGVD + + T         ++  L     A   +   +  
Sbjct: 227 TMGVMFTPLTVKYAYYDTERIGVDLIMK-TCFSPNRVIGLSSDLQQVGGASARIQDALST 285

Query: 238 ILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITK 297
           +L+Y +   +G+V  ++ + R   +L + +P +  D F+T      ND+ ++ YL  +T+
Sbjct: 286 VLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQ 345

Query: 298 TCNTMNQ 304
           +   +N+
Sbjct: 346 SQIALNE 352


>gi|169162584 PREDICTED: hypothetical protein LOC100132108 [Homo
           sapiens]
          Length = 194

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 42/196 (21%), Positives = 85/196 (43%), Gaps = 11/196 (5%)

Query: 81  IEVMNSFEL-LSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVH 139
           ++V +SF +  +   ++   +  +Y       FK+V      + WY  G     +D   +
Sbjct: 4   LDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDTAFN 63

Query: 140 KQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEATM-LFAELTYTLATEEAERI 198
           + +     + + +  +   K   LP   + SV    +G + +  F  +T   A EEA+ I
Sbjct: 64  EIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETAAEEAKEI 123

Query: 199 GVDHV---ARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHE 255
           GV H+    + T  G     T+++ +  Q   +K L+S++     Y++    G++  NH+
Sbjct: 124 GVKHLLQDIKDTTVG-----TLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQ 178

Query: 256 ILREAYALCHCLPVLS 271
            + +       LPV+S
Sbjct: 179 FIYQLQVF-KLLPVIS 193


>gi|169161813 PREDICTED: similar to hCG1644176 [Homo sapiens]
          Length = 194

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 41/196 (20%), Positives = 84/196 (42%), Gaps = 11/196 (5%)

Query: 81  IEVMNSFEL-LSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVH 139
           ++V +SF +  +   ++   +  +Y       FK+V      + WY  G     +D   +
Sbjct: 4   LDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDTAFN 63

Query: 140 KQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEATM-LFAELTYTLATEEAERI 198
           + +     + + +  +   K   LP   + SV    +G + +  F  +T     EEA+ I
Sbjct: 64  EIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETGAEEAKEI 123

Query: 199 GVDHV---ARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHE 255
           GV H+    + T  G     T+++ +  Q   +K L+S++     Y++    G++  NH+
Sbjct: 124 GVKHLLQDIKDTTVG-----TLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQ 178

Query: 256 ILREAYALCHCLPVLS 271
            + +       LPV+S
Sbjct: 179 FIYQLQVF-KLLPVIS 193


>gi|4503515 eukaryotic translation initiation factor 3, subunit 3
           gamma, 40kDa [Homo sapiens]
          Length = 352

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)

Query: 2   AAAAAAAAATNGTGGSSGMEVDAAVVPSVMACGVTGSVSVALHPLVILNISDHWIRMRSQ 61
           A ++++ A   G G   G   D+AV              V +  LV+L I  H+     +
Sbjct: 12  ATSSSSTAGAAGKGKGKGGSGDSAVK------------QVQIDGLVVLKIIKHY----QE 55

Query: 62  EGRPVQVI-GALIGKQEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELE 120
           EG+  +V+ G L+G      +E+ N F    HT ++    + +Y        + V  +  
Sbjct: 56  EGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHL 115

Query: 121 FLGWY 125
            +GWY
Sbjct: 116 HVGWY 120


>gi|38027923 COP9 signalosome subunit 5 [Homo sapiens]
          Length = 334

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 58  MRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIIIDK---EYYYTKEEQFKQ 114
           M ++ G  ++V+G ++GK +G  + +M+SF L     E ++       EY     E  KQ
Sbjct: 67  MHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQ 126

Query: 115 VFKELEFLGWY 125
           V +    +GWY
Sbjct: 127 VGRLENAIGWY 137


>gi|4506783 Sin3A-associated protein, 30kDa [Homo sapiens]
          Length = 220

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 1  MAAAAAAAAATNGTGGSSGMEVDAAVVPSVMACGVTGS 38
          +AAAAAAA+A NGTG  +G EV  A   +V A G  G+
Sbjct: 23 VAAAAAAASAGNGTGAGTGAEVPGA--GAVSAAGPPGA 58


>gi|151301228 formin binding protein 3 [Homo sapiens]
          Length = 930

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 2   AAAAAAAAATNGTGGSSGMEVDAAVVPSVMACGVTGSVSVALHPLVILNIS-DHWIRMRS 60
           AAAAAAAAA N    +S     +  VP V    VT  V+  +     + IS +   ++ S
Sbjct: 258 AAAAAAAAAANANASTSASNTVSGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTS 317

Query: 61  QEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKEL 119
                 Q +       E  + +   +        EE     K Y +  +E+ KQ FKEL
Sbjct: 318 TPAIQDQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKEL 376


>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 44/195 (22%), Positives = 82/195 (42%), Gaps = 21/195 (10%)

Query: 75  KQEGRNIEVMNSF-ELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTT---GGP 130
           +  G+N +V+ S  E LS T+E     +++YY     Q     K  E+    T    G P
Sbjct: 374 RDSGKNGQVVCSIQENLSFTLENS---EEDYYRLLTAQILDREKASEYNITVTATDRGTP 430

Query: 131 PDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEATMLFAELTYTL 190
           P  ++IH+  QV +I ++P      P        V + E+     N   T +F+ + Y  
Sbjct: 431 PLSTEIHITLQVTDINDNP------PAFSQASYSVYLPEN-----NARGTSIFSVIAYDP 479

Query: 191 ATEEAERIGVDHVARMTATGSGENSTVA--EHLIAQHSAIKMLHSRVKLILEYVKASEAG 248
            + E  R+ +  +A  T  GS  ++ V+        ++     + + + +   V AS++G
Sbjct: 480 DSNENSRV-IYSLAEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSG 538

Query: 249 EVPFNHEILREAYAL 263
             P +  +    + L
Sbjct: 539 SPPLSSNVSLRLFVL 553


>gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precursor
           [Homo sapiens]
          Length = 828

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 44/195 (22%), Positives = 82/195 (42%), Gaps = 21/195 (10%)

Query: 75  KQEGRNIEVMNSF-ELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTT---GGP 130
           +  G+N +V+ S  E LS T+E     +++YY     Q     K  E+    T    G P
Sbjct: 374 RDSGKNGQVVCSIQENLSFTLENS---EEDYYRLLTAQILDREKASEYNITVTATDRGTP 430

Query: 131 PDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEATMLFAELTYTL 190
           P  ++IH+  QV +I ++P      P        V + E+     N   T +F+ + Y  
Sbjct: 431 PLSTEIHITLQVTDINDNP------PAFSQASYSVYLPEN-----NARGTSIFSVIAYDP 479

Query: 191 ATEEAERIGVDHVARMTATGSGENSTVA--EHLIAQHSAIKMLHSRVKLILEYVKASEAG 248
            + E  R+ +  +A  T  GS  ++ V+        ++     + + + +   V AS++G
Sbjct: 480 DSNENSRV-IYSLAEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSG 538

Query: 249 EVPFNHEILREAYAL 263
             P +  +    + L
Sbjct: 539 SPPLSSNVSLRLFVL 553


>gi|5031613 growth differentiation factor 11 precursor [Homo
           sapiens]
          Length = 407

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 17/187 (9%)

Query: 2   AAAAAAAAATNGTGGSSGMEVDAAVVPSVMACGV----TGSVSVALHPLVILNISDHWIR 57
           AAAAAAAAA  G GG        +V P    C V      S  + L  +    +S   +R
Sbjct: 31  AAAAAAAAAAAGVGGERSSRPAPSVAPEPDGCPVCVWRQHSRELRLESIKSQILSK--LR 88

Query: 58  MRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFK 117
           ++       +V+  L+ K      ++++  +     ++ +  ++++ Y+   E    + +
Sbjct: 89  LKEAPNISREVVKQLLPKAPPLQ-QILDLHDFQGDALQPEDFLEEDEYHATTETVISMAQ 147

Query: 118 ELEFLGWYTTGGPPDPSDIHVHKQV--CEIIESPLFLKLNPMTKHTDLPVSVFESVIDI- 174
           E +      T G P     H   +V   +++++ L++ L P+ +    P +V+  ++ + 
Sbjct: 148 ETD--PAVQTDGSPLCCHFHFSPKVMFTKVLKAQLWVYLRPVPR----PATVYLQILRLK 201

Query: 175 -INGEAT 180
            + GE T
Sbjct: 202 PLTGEGT 208


>gi|50083279 centrosome protein 4 [Homo sapiens]
          Length = 1140

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 170 SVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIK 229
           +++ ++  E  +  ++L   +A +EA R  ++H+  ++  G  E     EHL   +  ++
Sbjct: 562 NIVSLMEKEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEHLTCVNHQLE 621

Query: 230 M----LHSRVKLILEYVKASE 246
                L S+V ++ E +++ E
Sbjct: 622 SEKYELKSKVLIMKETIESLE 642


>gi|169204514 PREDICTED: similar to hCG2040283 [Homo sapiens]
          Length = 126

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 181 MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILE 240
           ++F  LT      + ERIGVD + + T         ++  L     A   +   +  +L+
Sbjct: 3   VMFTPLTVKYVYCDTERIGVDLIVK-TCFSPNRVIGLSGDLQQVGGASARIRDALSRVLQ 61

Query: 241 YVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKT 298
           Y +   +G+V     ++     L + +P +  D F+       ND+ ++ YL  +T++
Sbjct: 62  YAEDVLSGKVSVGRFLVN----LVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQS 115


>gi|169205160 PREDICTED: similar to hCG2040283 [Homo sapiens]
          Length = 126

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 181 MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILE 240
           ++F  LT      + ERIGVD + + T         ++  L     A   +   +  +L+
Sbjct: 3   VMFTPLTVKYVYCDTERIGVDLIVK-TCFSPNRVIGLSGDLQQVGGASARIRDALSRVLQ 61

Query: 241 YVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKT 298
           Y +   +G+V     ++     L + +P +  D F+       ND+ ++ YL  +T++
Sbjct: 62  YAEDVLSGKVSVGRFLVN----LVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQS 115


>gi|169204408 PREDICTED: hypothetical protein LOC390282 [Homo
           sapiens]
          Length = 126

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 181 MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILE 240
           ++F  LT      + ERIGVD + + T         ++  L     A   +   +  +L+
Sbjct: 3   VMFTPLTVKYVYCDTERIGVDLIVK-TCFSPNRVIGLSGDLQQVGGASARIRDALSRVLQ 61

Query: 241 YVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKT 298
           Y +   +G+V     ++     L + +P +  D F+       ND+ ++ YL  +T++
Sbjct: 62  YAEDVLSGKVSVGRFLVN----LVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQS 115


>gi|60498973 myelin transcription factor 1-like [Homo sapiens]
          Length = 1184

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 214  NSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTD 273
            NS +   +I   + I  + S +K I E  K  E       HE+   + +L H L      
Sbjct: 1077 NSQMEADMIKLRTQITTMESNLKTIEEENKVIEQQNESLLHELANLSQSLIHSLA----- 1131

Query: 274  KFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFN 310
              +    D  N+    AY+ T+T+     +++ +  N
Sbjct: 1132 NIQLPHMDPINEQNFDAYVTTLTEMYTNQDRYQSPEN 1168


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,994,393
Number of Sequences: 37866
Number of extensions: 532721
Number of successful extensions: 1836
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1813
Number of HSP's gapped (non-prelim): 18
length of query: 327
length of database: 18,247,518
effective HSP length: 103
effective length of query: 224
effective length of database: 14,347,320
effective search space: 3213799680
effective search space used: 3213799680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.