Guide to the Human Genome
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Name: LOC100132108 Sequence: fasta or formatted (194aa) NCBI GI: 169161813
Description:

PREDICTED: similar to hCG1644176

Not currently referenced in the text

Other entries for this name:
alt prot {194aa} PREDICTED: hypothetical protein LOC100132108
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          8           1
 C cysteine            1.5          3           1
 D aspartate           6.2         12           2
 E glutamate           6.7         13           2
 F phenylalanine       4.1          8           1
 G glycine             4.6          9           1
 H histidine           3.1          6           1
 I isoleucine          4.6          9           1
 K lysine              9.3         18           1
 L leucine            11.3         22           2
 M methionine          2.1          4           1
 N asparagine          5.2         10           1
 P proline             2.6          5           1
 Q glutamine           3.1          6           1
 R arginine            3.6          7           1
 S serine              6.7         13           3
 T threonine           8.2         16           2
 V valine              8.2         16           1
 W tryptophan          0.5          1           1
 Y tyrosine            4.1          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1644176 
LOC100132108          0.995   PREDICTED: hypothetical protein LOC100132108 
PSMD7                 0.732   proteasome 26S non-ATPase subunit 7 
EIF3F                 0.088   eukaryotic translation initiation factor 3, subunit 5...
COPS6                 0.044   COP9 signalosome subunit 6 
PZP                   0.008   pregnancy-zone protein 
KIAA0196              0.008   strumpellin 
ZSWIM3                0.005   zinc finger, SWIM domain containing 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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