COPS6 26343

Name: COPS6	Sequence: fasta or formatted (327aa)		NCBI GI: 34147637
Description: COP9 signalosome subunit 6		Referenced in: Proteasome Signalosome
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.6 28 9 C cysteine 1.8 6 1 D aspartate 4.0 13 1 E glutamate 8.3 27 2 F phenylalanine 4.3 14 2 G glycine 7.0 23 2 H histidine 3.7 12 1 I isoleucine 6.7 22 3 K lysine 4.9 16 1 L leucine 8.3 27 2 M methionine 3.7 12 1 N asparagine 4.0 13 1 P proline 3.4 11 2 Q glutamine 3.1 10 1 R arginine 3.7 12 2 S serine 5.8 19 2 T threonine 6.7 22 2 V valine 8.6 28 2 W tryptophan 0.6 2 1 Y tyrosine 3.1 10 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 COP9 signalosome subunit 6 PSMD7 0.130 proteasome 26S non-ATPase subunit 7 EIF3F 0.119 eukaryotic translation initiation factor 3, subunit 5... LOC100132108 0.029 PREDICTED: hypothetical protein LOC100132108 LOC100132108 0.025 PREDICTED: similar to hCG1644176 EIF3H 0.021 eukaryotic translation initiation factor 3, subunit 3... COPS5 0.019 COP9 signalosome subunit 5 SAP30 0.014 Sin3A-associated protein, 30kDa PRPF40A 0.013 formin binding protein 3 PCDHGA9 0.013 protocadherin gamma subfamily A, 9 isoform 1 precurs... PCDHGA9 0.013 protocadherin gamma subfamily A, 9 isoform 2 precurs... GDF11 0.010 growth differentiation factor 11 precursor CEP135 0.010 centrosome protein 4 LOC390282 0.008 PREDICTED: similar to hCG2040283 LOC390282 0.008 PREDICTED: similar to hCG2040283 LOC390282 0.008 PREDICTED: hypothetical protein LOC390282 MYT1L 0.005 myelin transcription factor 1-like Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.