Guide to the Human Genome
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Name: LOC390282 Sequence: fasta or formatted (126aa) NCBI GI: 169205160
Description:

PREDICTED: similar to hCG2040283

Referenced in:

Translation Factors

Other entries for this name:
alt mRNA [126aa] PREDICTED: hypothetical protein LOC390282
alt mRNA [126aa] PREDICTED: similar to hCG2040283
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6          7           1
 C cysteine            1.6          2           1
 D aspartate           6.3          8           2
 E glutamate           3.2          4           1
 F phenylalanine       3.2          4           1
 G glycine             6.3          8           2
 H histidine           0.0          0           0
 I isoleucine          6.3          8           1
 K lysine              4.0          5           1
 L leucine            13.5         17           2
 M methionine          3.2          4           1
 N asparagine          6.3          8           1
 P proline             3.2          4           1
 Q glutamine           4.8          6           2
 R arginine            4.8          6           1
 S serine              6.3          8           1
 T threonine           4.8          6           1
 V valine             13.5         17           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2040283 
LOC390282             1.000   PREDICTED: similar to hCG2040283 
LOC390282             1.000   PREDICTED: hypothetical protein LOC390282 
EIF3F                 0.868   eukaryotic translation initiation factor 3, subunit 5...
PSMD7                 0.045   proteasome 26S non-ATPase subunit 7 
C15orf59              0.027   hypothetical protein LOC388135 
COPS6                 0.023   COP9 signalosome subunit 6 
TP73                  0.009   tumor protein p73 isoform d 
TP73                  0.009   tumor protein p73 isoform c 
TP73                  0.009   tumor protein p73 isoform b 
TP73                  0.009   tumor protein p73 isoform a 
MVP                   0.005   major vault protein 
MVP                   0.005   major vault protein 
TLN1                  0.005   talin 1 
LEPREL2               0.005   leprecan-like 2 
MEPCE                 0.005   bin3, bicoid-interacting 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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