Guide to the Human Genome
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Name: SYTL3 Sequence: fasta or formatted (542aa) NCBI GI: 110227631
Description:

synaptotagmin-like 3

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         30           1
 C cysteine            3.7         20           2
 D aspartate           3.9         21           1
 E glutamate           5.7         31           3
 F phenylalanine       3.3         18           1
 G glycine             6.5         35           2
 H histidine           2.8         15           1
 I isoleucine          2.8         15           2
 K lysine              7.9         43           4
 L leucine            11.1         60           2
 M methionine          0.7          4           1
 N asparagine          3.1         17           1
 P proline             5.7         31           3
 Q glutamine           6.8         37           2
 R arginine            6.1         33           2
 S serine              7.2         39           2
 T threonine           6.6         36           2
 V valine              6.8         37           2
 W tryptophan          2.0         11           1
 Y tyrosine            1.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptotagmin-like 3 
SYTL5                 0.179   synaptotagmin-like 5 isoform 1 
SYTL5                 0.179   synaptotagmin-like 5 isoform 1 
SYTL5                 0.178   synaptotagmin-like 5 isoform 2 
SYTL4                 0.172   synaptotagmin-like 4 
SYTL4                 0.172   synaptotagmin-like 4 
SYTL2                 0.156   synaptotagmin-like 2 isoform i 
SYTL2                 0.156   synaptotagmin-like 2 isoform g 
SYTL2                 0.156   synaptotagmin-like 2 isoform d 
SYTL2                 0.156   synaptotagmin-like 2 isoform b 
SYTL2                 0.156   synaptotagmin-like 2 isoform f 
SYTL2                 0.156   synaptotagmin-like 2 isoform e 
SYTL2                 0.156   synaptotagmin-like 2 isoform c 
SYTL2                 0.155   synaptotagmin-like 2 isoform a 
SYTL2                 0.155   synaptotagmin-like 2 isoform h 
SYTL1                 0.143   synaptotagmin-like 1 
DOC2B                 0.051   double C2-like domains, beta 
SYT6                  0.050   synaptotagmin VI 
MYRIP                 0.050   myosin VIIA and Rab interacting protein 
SYT2                  0.050   synaptotagmin II 
SYT2                  0.050   synaptotagmin II 
SYT5                  0.049   synaptotagmin V 
SYT9                  0.048   synaptotagmin IX 
SYT10                 0.048   synaptotagmin X 
SYT1                  0.048   synaptotagmin I 
SYT1                  0.048   synaptotagmin I 
SYT1                  0.048   synaptotagmin I 
SYT3                  0.046   synaptotagmin III 
SYT3                  0.046   synaptotagmin III 
SYT3                  0.046   synaptotagmin III 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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