Guide to the Human Genome
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Name: C9orf85 Sequence: fasta or formatted (157aa) NCBI GI: 33386683
Description:

hypothetical protein LOC138241

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.5          4           1
 C cysteine            6.4         10           1
 D aspartate           8.3         13           3
 E glutamate           7.6         12           2
 F phenylalanine       2.5          4           1
 G glycine             3.2          5           2
 H histidine           3.8          6           1
 I isoleucine          3.8          6           1
 K lysine             14.6         23           2
 L leucine             5.7          9           1
 M methionine          1.9          3           1
 N asparagine          6.4         10           2
 P proline             3.2          5           1
 Q glutamine           4.5          7           1
 R arginine            5.7          9           2
 S serine              7.6         12           2
 T threonine           3.8          6           1
 V valine              5.7          9           1
 W tryptophan          0.6          1           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC138241 
ZNF680                0.032   zinc finger protein 680 isoform 1 
ZNF284                0.029   zinc finger protein 284 
ZNF138                0.029   zinc finger protein 138 isoform 1 
ZNF430                0.029   zinc finger protein 430 
ZNF676                0.026   zinc finger protein 676 
ZNF92                 0.026   zinc finger protein 92 isoform 1 
ZNF92                 0.026   zinc finger protein 92 isoform 2 
ZNF107                0.026   zinc finger protein 107 
ZNF107                0.026   zinc finger protein 107 
ZNF727                0.023   zinc finger protein 727 
LOC100294071          0.023   PREDICTED: similar to zinc finger protein 208 [Homo...
ZNF141                0.023   zinc finger protein 141 
CCDC18                0.023   sarcoma antigen NY-SAR-41 
ZNF43                 0.023   zinc finger protein 43 
ZNF431                0.023   zinc finger protein 431 
ZNF730                0.023   PREDICTED: zinc finger protein 730 
ZNF730                0.023   PREDICTED: zinc finger protein 730 
ZNF730                0.023   PREDICTED: zinc finger protein 730 
ZNF85                 0.023   zinc finger protein 85 
ZNF595                0.019   zinc finger protein 595 
ZNF45                 0.019   zinc finger protein 45 
ZNF728                0.016   PREDICTED: zinc finger protein 728 
LOC100133475          0.016   PREDICTED: similar to Putative zinc finger protein ...
ZNF728                0.016   PREDICTED: zinc finger protein 728 
ZNF728                0.016   PREDICTED: zinc finger protein 728 
ZNF254                0.016   zinc finger protein 254 
ZNF195                0.016   zinc finger protein 195 isoform 2 
ZNF195                0.016   zinc finger protein 195 isoform 1 
ZNF195                0.016   zinc finger protein 195 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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