Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100133475 Sequence: fasta or formatted (429aa) NCBI GI: 239752112
Description:

PREDICTED: similar to Putative zinc finger protein ENSP00000328166, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.9          8           1
 C cysteine            7.0         30           1
 D aspartate           2.3         10           1
 E glutamate           7.9         34           2
 F phenylalanine       5.1         22           2
 G glycine             6.1         26           2
 H histidine           5.4         23           1
 I isoleucine          5.6         24           2
 K lysine             13.1         56           2
 L leucine             5.4         23           1
 M methionine          1.4          6           1
 N asparagine          4.2         18           1
 P proline             3.5         15           1
 Q glutamine           5.4         23           1
 R arginine            5.8         25           3
 S serine              7.5         32           3
 T threonine           5.4         23           1
 V valine              2.3         10           1
 W tryptophan          1.4          6           1
 Y tyrosine            3.5         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative zinc finger protein ... 
LOC729501             0.903   PREDICTED: zinc finger protein ENSP00000344568-like...
LOC100288765          0.903   PREDICTED: hypothetical protein XP_002342966 
ZNF737                0.615   zinc finger protein 737 
ZNF737                0.615   PREDICTED: zinc finger protein 737 
ZNF737                0.615   PREDICTED: zinc finger protein 737 
ZNF737                0.615   PREDICTED: zinc finger protein 737 
ZNF431                0.609   zinc finger protein 431 
ZNF92                 0.603   zinc finger protein 92 isoform 2 
ZNF726                0.601   PREDICTED: zinc finger protein 726 
ZNF726                0.601   PREDICTED: zinc finger protein 726 
ZNF726                0.601   PREDICTED: zinc finger protein 726 
ZNF708                0.600   zinc finger protein 708 
ZNF85                 0.596   zinc finger protein 85 
ZNF66                 0.596   PREDICTED: zinc finger protein 66 
ZNF66                 0.596   PREDICTED: zinc finger protein 66 
ZNF66                 0.596   PREDICTED: zinc finger protein 66 
ZNF93                 0.595   zinc finger protein 93 
ZNF430                0.595   zinc finger protein 430 
LOC646864             0.594   PREDICTED: similar to hCG36734 
LOC646864             0.594   PREDICTED: similar to hCG36734 
LOC646864             0.594   PREDICTED: similar to hCG36734 
ZNF273                0.588   zinc finger protein 273 
ZNF492                0.588   zinc finger protein 492 
ZNF253                0.584   zinc finger protein 253 
ZNF100                0.582   zinc finger protein 100 
ZNF595                0.580   zinc finger protein 595 
LOC730110             0.580   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
LOC730110             0.579   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
LOC730110             0.579   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press