Search of human proteins with 123173772

Search of human proteins with 123173772

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|123173772 tRNA(m1A58)-methyltransferase subunit TRM61 [Homo
sapiens]
         (289 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|123173772 tRNA(m1A58)-methyltransferase subunit TRM61 [Homo s...   594   e-170
gi|222831587 tRNA methyltransferase 61 homolog B [Homo sapiens]        47   1e-05
gi|239753271 PREDICTED: similar to ankyrin repeat domain 36 [Hom...    36   0.045
gi|190360566 protein-L-isoaspartate (D-aspartate) O-methyltransf...    33   0.29 
gi|157388997 protein-L-isoaspartate (D-aspartate) O-methyltransf...    32   0.65 
gi|157388995 protein-L-isoaspartate (D-aspartate) O-methyltransf...    32   0.65 
gi|50233787 nuclear protein in testis [Homo sapiens]                   31   1.4  
gi|38016937 lemur tyrosine kinase 2 [Homo sapiens]                     30   3.2  
gi|167736355 mucin 4 isoform a [Homo sapiens]                          29   4.2  
gi|109148542 alanyl-tRNA synthetase [Homo sapiens]                     29   4.2  
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      29   5.5  
gi|142976733 surface glycoprotein, Ig superfamily member [Homo s...    29   5.5  
gi|46255017 hypothetical protein LOC84985 isoform b [Homo sapiens]     28   7.2  
gi|40254997 hypothetical protein LOC84985 isoform a [Homo sapiens]     28   7.2  

>gi|123173772 tRNA(m1A58)-methyltransferase subunit TRM61 [Homo
           sapiens]
          Length = 289

 Score =  594 bits (1531), Expect = e-170
 Identities = 289/289 (100%), Positives = 289/289 (100%)

Query: 1   MSFVAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTC 60
           MSFVAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTC
Sbjct: 1   MSFVAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTC 60

Query: 61  GRGGWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHA 120
           GRGGWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHA
Sbjct: 61  GRGGWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHA 120

Query: 121 IIRTIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRTQDVCRSGFGVSHVADAVFL 180
           IIRTIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRTQDVCRSGFGVSHVADAVFL
Sbjct: 121 IIRTIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRTQDVCRSGFGVSHVADAVFL 180

Query: 181 DIPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAARGFSELSTLEVLPQVYNV 240
           DIPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAARGFSELSTLEVLPQVYNV
Sbjct: 181 DIPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAARGFSELSTLEVLPQVYNV 240

Query: 241 RTVSLPPPDLGTGTDGPAGSDTSPFRSGTPMKEAVGHTGYLTFATKTPG 289
           RTVSLPPPDLGTGTDGPAGSDTSPFRSGTPMKEAVGHTGYLTFATKTPG
Sbjct: 241 RTVSLPPPDLGTGTDGPAGSDTSPFRSGTPMKEAVGHTGYLTFATKTPG 289


>gi|222831587 tRNA methyltransferase 61 homolog B [Homo sapiens]
          Length = 477

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 31/204 (15%)

Query: 49  LIGRPFGSKVTCGRGGWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVC 108
           ++G+  G  +    G    +  P  E + + +   T I +  DI +I  M+++ PG  V 
Sbjct: 192 IVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVL 251

Query: 109 ESGTGSGSVSHAIIRTIAPTGHLHTVEFHQQRAEKAREEFQEHR-------VGRW----- 156
           E+G+GSG +S  + + +   G + + E  +   + A++ ++  R       V  W     
Sbjct: 252 EAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD 311

Query: 157 -----VTVRTQDVCRSGFGVSHVADAVFLDIPSPWEAVGHAWDALKVEGGRFCSFSPCIE 211
                ++  T+D+    F      DAV LD+ +P   +   +  LK  GG    +   I 
Sbjct: 312 FIHKDISGATEDIKSLTF------DAVALDMLNPHVTLPVFYPHLK-HGGVCAVYVVNIT 364

Query: 212 QV------QRTCQ-ALAARGFSEL 228
           QV       RTC+ AL+    SE+
Sbjct: 365 QVIELLDGIRTCELALSCEKISEV 388


>gi|239753271 PREDICTED: similar to ankyrin repeat domain 36 [Homo
           sapiens]
          Length = 501

 Score = 35.8 bits (81), Expect = 0.045
 Identities = 36/124 (29%), Positives = 46/124 (37%), Gaps = 18/124 (14%)

Query: 111 GTGSGSVSHAIIRTIAPTGHLHTVE-FHQQRAEKAREEF--------QEHRVGRWVTVRT 161
           G GS    H I R +A TG   +V   HQQ  ++ R  F        Q HR+ RW+    
Sbjct: 152 GEGSTLAPHGIFRNLAATGGQASVSTSHQQGEDRIRTPFSVSVLHYAQNHRIWRWMWRDL 211

Query: 162 QD-VCRSGFGVSHVADAVFLDIPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220
            D V +SG G S          P P            V   R C+     EQ+ R  Q +
Sbjct: 212 GDGVVKSGCGPSGATRPKTGAQPHP--------GGCGVPSARSCALGVGQEQLARAAQPM 263

Query: 221 AARG 224
              G
Sbjct: 264 GPLG 267


>gi|190360566 protein-L-isoaspartate (D-aspartate)
           O-methyltransferase domain containing 1 [Homo sapiens]
          Length = 357

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 99  LELRPGSVVCESGTGSGSVSHAIIRTIAPTGHLHTVEFHQQRAEKAREEFQ 149
           L+L+PG      G+G+G +S  +   + P G  H +E H    E A+E+ +
Sbjct: 76  LKLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEYAKEKLE 126


>gi|157388997 protein-L-isoaspartate (D-aspartate)
           O-methyltransferase domain containing 2 isoform 2 [Homo
           sapiens]
          Length = 334

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 99  LELRPGSVVCESGTGSGSVSHAIIRTIAPTGHLHTVEFHQQRAEKAREE 147
           L+L+PG      G+G+G +S  +   + P G  H VE H    E A+++
Sbjct: 76  LDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEYAKQK 124


>gi|157388995 protein-L-isoaspartate (D-aspartate)
           O-methyltransferase domain containing 2 isoform 1 [Homo
           sapiens]
          Length = 361

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 99  LELRPGSVVCESGTGSGSVSHAIIRTIAPTGHLHTVEFHQQRAEKAREE 147
           L+L+PG      G+G+G +S  +   + P G  H VE H    E A+++
Sbjct: 76  LDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEYAKQK 124


>gi|50233787 nuclear protein in testis [Homo sapiens]
          Length = 1132

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 36/129 (27%), Positives = 51/129 (39%), Gaps = 26/129 (20%)

Query: 163 DVCRS-GFGVSHVADAVFLDIPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALA 221
           DVC S G  +S   DAV L++P   E V  ++   K           C+ + Q  CQ L 
Sbjct: 715 DVCLSPGVWLSSEMDAVGLELPVQIEEVIESFQVEK-----------CVTEYQEGCQGLG 763

Query: 222 ARGFSELSTLE----------VLPQVYNVRTVSLPPPDLGTGTDGPAGSDTSPFRSGTPM 271
           +RG   L   E          V+P    V   +L   +      GP  +++ P RS    
Sbjct: 764 SRGNISLGPGETLVPGDTESSVIPCGGTVAAAALEKRNY-CSLPGPLRANSPPLRSKENQ 822

Query: 272 K---EAVGH 277
           +   E VGH
Sbjct: 823 EQSCETVGH 831


>gi|38016937 lemur tyrosine kinase 2 [Homo sapiens]
          Length = 1503

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 221 AARGFSELSTLEVLPQVYNVRTVSLPPPDL 250
           AA+ +S LS L+VL QV   R   LP P L
Sbjct: 346 AAQPYSNLSNLDVLNQVIRERDTKLPKPQL 375


>gi|167736355 mucin 4 isoform a [Homo sapiens]
          Length = 5284

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 175  ADAVFLDIPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAARGFSELSTLEVL 234
            A  V  D P   E  G    +LK +GGR  + SP     Q     + +      ST   +
Sbjct: 4121 ASTVSSDSPLKMETPGMTTPSLKTDGGRRTATSPPPTTSQTIISTIPSTAMHTRSTAAPI 4180

Query: 235  PQVYNVRTVSLPPPDLGTG 253
            P +   R VSL P   G G
Sbjct: 4181 P-ILPERGVSLFPYGAGAG 4198


>gi|109148542 alanyl-tRNA synthetase [Homo sapiens]
          Length = 968

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 217 CQALAARGFSELSTL--EVLPQVYNVRTVSLPPPDLGTGTDGPAGSDTS-PFRSGTPMKE 273
           C   AA+    L  +  E  P    V ++ +P  +L     GPAGS TS  F  GT ++ 
Sbjct: 671 CPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLRN 730

Query: 274 AVGHTGYLTFATK 286
           +  H G     T+
Sbjct: 731 S-SHAGAFVIVTE 742


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 246 PPPDLGTGTDGPAGSDTSPFRSGTPMKEAVGHTGYLTF 283
           P PD  TG  GPAG D  P   G P   A G  G + F
Sbjct: 547 PGPDGKTGPPGPAGQDGRPGPPGPP--GARGQAGVMGF 582


>gi|142976733 surface glycoprotein, Ig superfamily member [Homo
           sapiens]
          Length = 1264

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 238 YNVRTVSLPPPDLGTGTDGPAGSDTSPFRSGTPMKEAVG 276
           Y V+ +S PP  LG+G  G  G  TSP RS   +   VG
Sbjct: 934 YPVKDLSTPPNSLGSG--GNVGPATSPARSSDMLYLIVG 970


>gi|46255017 hypothetical protein LOC84985 isoform b [Homo sapiens]
          Length = 367

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 228 LSTLEVLPQVYNVRTVSLPPPDLGTGTDGPAGSDTSPFRSGT 269
           LS++E        R    PP  LG    GP G D+S  +SGT
Sbjct: 63  LSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGLDSSSLQSGT 104


>gi|40254997 hypothetical protein LOC84985 isoform a [Homo sapiens]
          Length = 434

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 228 LSTLEVLPQVYNVRTVSLPPPDLGTGTDGPAGSDTSPFRSGT 269
           LS++E        R    PP  LG    GP G D+S  +SGT
Sbjct: 63  LSSVEAQYIQAQAREPPCPPDTLGGAEAGPKGLDSSSLQSGT 104


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.135    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,464,422
Number of Sequences: 37866
Number of extensions: 602092
Number of successful extensions: 1517
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1498
Number of HSP's gapped (non-prelim): 25
length of query: 289
length of database: 18,247,518
effective HSP length: 101
effective length of query: 188
effective length of database: 14,423,052
effective search space: 2711533776
effective search space used: 2711533776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.