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Search of human proteins with 32813443
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32813443 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) small phosphatase 1 isoform 2 [Homo sapiens]
(260 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32813443 CTD (carboxy-terminal domain, RNA polymerase II, pol... 527 e-150
gi|10864009 CTD (carboxy-terminal domain, RNA polymerase II, pol... 523 e-149
gi|56549681 small CTD phosphatase 3 isoform 2 [Homo sapiens] 361 e-100
gi|56549683 small CTD phosphatase 3 isoform 1 [Homo sapiens] 354 4e-98
gi|93004102 nuclear LIM interactor-interacting factor 2 [Homo sa... 313 7e-86
gi|100815975 CTD (carboxy-terminal domain, RNA polymerase II, po... 153 1e-37
gi|219555649 dullard homolog [Homo sapiens] 140 8e-34
gi|31542547 dullard homolog [Homo sapiens] 140 8e-34
gi|48526509 translocase of inner mitochondrial membrane 50 homol... 80 2e-15
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 45 6e-05
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 45 6e-05
gi|24797106 UBX domain containing 8 [Homo sapiens] 32 0.72
gi|31317303 heat shock 70kD protein 12B [Homo sapiens] 30 2.8
gi|110349719 titin isoform N2-A [Homo sapiens] 28 6.1
gi|110349717 titin isoform novex-2 [Homo sapiens] 28 6.1
gi|110349713 titin isoform novex-1 [Homo sapiens] 28 6.1
gi|110349715 titin isoform N2-B [Homo sapiens] 28 6.1
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens] 28 6.1
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] 28 6.1
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens] 28 6.1
gi|18699734 uridine-cytidine kinase 2 [Homo sapiens] 28 8.0
>gi|32813443 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) small phosphatase 1 isoform 2 [Homo
sapiens]
Length = 260
Score = 527 bits (1358), Expect = e-150
Identities = 260/260 (100%), Positives = 260/260 (100%)
Query: 1 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA 60
MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA
Sbjct: 1 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA 60
Query: 61 PLLVEENGAIPKTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEID 120
PLLVEENGAIPKTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEID
Sbjct: 61 PLLVEENGAIPKTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEID 120
Query: 121 GVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESC 180
GVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESC
Sbjct: 121 GVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESC 180
Query: 181 VFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFF 240
VFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFF
Sbjct: 181 VFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFF 240
Query: 241 EQLSRVDDVYSVLRQPRPGS 260
EQLSRVDDVYSVLRQPRPGS
Sbjct: 241 EQLSRVDDVYSVLRQPRPGS 260
>gi|10864009 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) small phosphatase 1 isoform 1 [Homo
sapiens]
Length = 261
Score = 523 bits (1346), Expect = e-149
Identities = 260/261 (99%), Positives = 260/261 (99%), Gaps = 1/261 (0%)
Query: 1 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA 60
MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA
Sbjct: 1 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA 60
Query: 61 PLLVEENGAIPK-TPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI 119
PLLVEENGAIPK TPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI
Sbjct: 61 PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEI 120
Query: 120 DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES 179
DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES
Sbjct: 121 DGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRES 180
Query: 180 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF 239
CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF
Sbjct: 181 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF 240
Query: 240 FEQLSRVDDVYSVLRQPRPGS 260
FEQLSRVDDVYSVLRQPRPGS
Sbjct: 241 FEQLSRVDDVYSVLRQPRPGS 261
>gi|56549681 small CTD phosphatase 3 isoform 2 [Homo sapiens]
Length = 265
Score = 361 bits (926), Expect = e-100
Identities = 182/261 (69%), Positives = 211/261 (80%), Gaps = 6/261 (2%)
Query: 1 MDSSAVITQISK-EEARGPLRGKGDQKSAAS---QKPRSRGILHSLFCCVCRDDGEALPA 56
MD A+ITQ++ +E G L G G++ S + +K RSR IL S FCC + EA P
Sbjct: 1 MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60
Query: 57 HSGA--PLLVEENGAIPKTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFI 114
S + P LVEENG + K P +YLLPE D K CVVIDLDETLVHSSFKP++NADFI
Sbjct: 61 SSPSVLPPLVEENGGLQKPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADFI 120
Query: 115 IPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRAR 174
+PVEIDG +HQVYVLKRPHVDEFLQRMG+LFECVLFTASLAKYADPVADLLD+WG FRAR
Sbjct: 121 VPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRAR 180
Query: 175 LFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELH 234
LFRESCVFHRGNYVKDLSRLGR+L +V+I+DNSPASY+FHP+NAVPV SWFD+M+DTEL
Sbjct: 181 LFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELL 240
Query: 235 DLLPFFEQLSRVDDVYSVLRQ 255
DL+PFFE LSR DDVYS+L +
Sbjct: 241 DLIPFFEGLSREDDVYSMLHR 261
>gi|56549683 small CTD phosphatase 3 isoform 1 [Homo sapiens]
Length = 276
Score = 354 bits (909), Expect = 4e-98
Identities = 183/272 (67%), Positives = 211/272 (77%), Gaps = 17/272 (6%)
Query: 1 MDSSAVITQISK-EEARGPLRGKGDQKSAAS---QKPRSRGILHSLFCCVCRDDGEALPA 56
MD A+ITQ++ +E G L G G++ S + +K RSR IL S FCC + EA P
Sbjct: 1 MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60
Query: 57 HSGA--PLLVEENGA-----------IPKTPVQYLLPEAKAQDSDKICVVIDLDETLVHS 103
S + P LVEENG IP P +YLLPE D K CVVIDLDETLVHS
Sbjct: 61 SSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHS 120
Query: 104 SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVAD 163
SFKP++NADFI+PVEIDG +HQVYVLKRPHVDEFLQRMG+LFECVLFTASLAKYADPVAD
Sbjct: 121 SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD 180
Query: 164 LLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVAS 223
LLD+WG FRARLFRESCVFHRGNYVKDLSRLGR+L +V+I+DNSPASY+FHP+NAVPV S
Sbjct: 181 LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS 240
Query: 224 WFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ 255
WFD+M+DTEL DL+PFFE LSR DDVYS+L +
Sbjct: 241 WFDDMTDTELLDLIPFFEGLSREDDVYSMLHR 272
>gi|93004102 nuclear LIM interactor-interacting factor 2 [Homo
sapiens]
Length = 271
Score = 313 bits (803), Expect = 7e-86
Identities = 163/270 (60%), Positives = 197/270 (72%), Gaps = 14/270 (5%)
Query: 1 MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA 60
M+ ++ITQ +E+A L +G ++ +KPR R I +LFCC + +
Sbjct: 1 MEHGSIITQARREDAL-VLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTEL 59
Query: 61 PLLVEENGAIPKTPV----QY---------LLPEAKAQDSDKICVVIDLDETLVHSSFKP 107
EE I K+ + QY LLPE +D +ICVVIDLDETLVHSSFKP
Sbjct: 60 AAYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHSSFKP 119
Query: 108 VNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDK 167
+NNADFI+P+EI+G HQVYVLKRP+VDEFL+RMGELFECVLFTASLAKYADPV DLLD+
Sbjct: 120 INNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDR 179
Query: 168 WGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDN 227
G FRARLFRESCVFH+G YVKDLSRLGRDLR+ LILDNSPASY+FHP+NAVPV SWFD+
Sbjct: 180 CGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDD 239
Query: 228 MSDTELHDLLPFFEQLSRVDDVYSVLRQPR 257
M+DTEL +L+P FE+LS +DVY+ L Q R
Sbjct: 240 MADTELLNLIPIFEELSGAEDVYTSLGQLR 269
>gi|100815975 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) small phosphatase like 2 [Homo sapiens]
Length = 466
Score = 153 bits (387), Expect = 1e-37
Identities = 80/189 (42%), Positives = 117/189 (61%), Gaps = 8/189 (4%)
Query: 61 PLLVEENGAIPKTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEID 120
PL E+ P P+ K + + + +V+DLDETLVH S + +A PV
Sbjct: 266 PLTEEQLNRKPALPL-------KTRSTPEFSLVLDLDETLVHCSLNELEDAALTFPVLFQ 318
Query: 121 GVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRES 179
V++QVYV RP EFL+RM +++E +LFTAS YAD + ++LD K R RLFRE
Sbjct: 319 DVIYQVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREH 378
Query: 180 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF 239
CV +GNY+KDL+ LGRDL + +I+DNSP ++ + N +P+ SWF + +D EL L+PF
Sbjct: 379 CVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDNELLKLIPF 438
Query: 240 FEQLSRVDD 248
E+L +++
Sbjct: 439 LEKLVELNE 447
>gi|219555649 dullard homolog [Homo sapiens]
Length = 244
Score = 140 bits (354), Expect = 8e-34
Identities = 81/179 (45%), Positives = 110/179 (61%), Gaps = 10/179 (5%)
Query: 84 AQDSDKICVVIDLDETLVHS--------SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVD 135
AQ KI +V+DLDETL+HS + +P DFI+ V ID + +V KRPHVD
Sbjct: 57 AQVKRKI-LVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVD 115
Query: 136 EFLQRMGELFECVLFTASLAKYADPVADLLDKWGAF-RARLFRESCVFHRGNYVKDLSRL 194
FL+ + + +E V+FTAS+ Y VAD LD + + R +R+ C G+Y+KDLS +
Sbjct: 116 FFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVV 175
Query: 195 GRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVL 253
DL ++ILDNSP +Y HPDNA+P+ SWF + SDT L +LLP + L DV SVL
Sbjct: 176 HSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDALRFTADVRSVL 234
>gi|31542547 dullard homolog [Homo sapiens]
Length = 244
Score = 140 bits (354), Expect = 8e-34
Identities = 81/179 (45%), Positives = 110/179 (61%), Gaps = 10/179 (5%)
Query: 84 AQDSDKICVVIDLDETLVHS--------SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVD 135
AQ KI +V+DLDETL+HS + +P DFI+ V ID + +V KRPHVD
Sbjct: 57 AQVKRKI-LVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVD 115
Query: 136 EFLQRMGELFECVLFTASLAKYADPVADLLDKWGAF-RARLFRESCVFHRGNYVKDLSRL 194
FL+ + + +E V+FTAS+ Y VAD LD + + R +R+ C G+Y+KDLS +
Sbjct: 116 FFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVV 175
Query: 195 GRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVL 253
DL ++ILDNSP +Y HPDNA+P+ SWF + SDT L +LLP + L DV SVL
Sbjct: 176 HSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDALRFTADVRSVL 234
>gi|48526509 translocase of inner mitochondrial membrane 50 homolog
[Homo sapiens]
Length = 456
Score = 80.1 bits (196), Expect = 2e-15
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 10/158 (6%)
Query: 106 KPVNNADFIIPVEIDGVV-HQVYVL-------KRPHVDEFLQRMGELFECVLFTASLAKY 157
+P + + +E+ GV+ H + L KRP ++ Q++ L+E V+FT+
Sbjct: 244 EPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMT 303
Query: 158 ADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDN 217
A P+ D +D G RLFR++ + G++VKD+S L RD RV+++D ++ P N
Sbjct: 304 AFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYN 363
Query: 218 AVPVASWFDNMSDTELHDLLPFFE--QLSRVDDVYSVL 253
V + W N D L DL F + L+ V+DV +VL
Sbjct: 364 GVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 401
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 45.1 bits (105), Expect = 6e-05
Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 89 KICVVIDLDETLVHSSFKPVNNADF--IIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFE 146
K+ +++DLD+TL+H++ + I ++ ++ RPH +FL+++ +L+E
Sbjct: 182 KLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYE 241
Query: 147 CVLFTASLAKYADPVADLLD-KWGAFRAR-LFRESCV--FHRGNYVKDLSRLGRDLRRVL 202
+FT YA +A LD + F R L R+ C+ F + +++L G + V
Sbjct: 242 LHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSM--VC 299
Query: 203 ILDNSPASYVFHPD 216
I+D+ + F P+
Sbjct: 300 IIDDREDVWKFAPN 313
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 45.1 bits (105), Expect = 6e-05
Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 89 KICVVIDLDETLVHSSFKPVNNADF--IIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFE 146
K+ +++DLD+TL+H++ + I ++ ++ RPH +FL+++ +L+E
Sbjct: 182 KLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYE 241
Query: 147 CVLFTASLAKYADPVADLLD-KWGAFRAR-LFRESCV--FHRGNYVKDLSRLGRDLRRVL 202
+FT YA +A LD + F R L R+ C+ F + +++L G + V
Sbjct: 242 LHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSM--VC 299
Query: 203 ILDNSPASYVFHPD 216
I+D+ + F P+
Sbjct: 300 IIDDREDVWKFAPN 313
>gi|24797106 UBX domain containing 8 [Homo sapiens]
Length = 445
Score = 31.6 bits (70), Expect = 0.72
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 155 AKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLI 203
++ DPV D++ +F + R VF++G Y + L+ R+LR +L+
Sbjct: 127 SRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLV 175
>gi|31317303 heat shock 70kD protein 12B [Homo sapiens]
Length = 686
Score = 29.6 bits (65), Expect = 2.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 54 LPAHSGAPLLVEENGAIPKTPVQYLLPEAKAQDSDKICVVIDLD 97
+P+ G+P E G P TP Q PE +A VV+ +D
Sbjct: 23 VPSPPGSPRTQESCGIAPLTPSQSPKPEVRAPQQASFSVVVAID 66
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 28.5 bits (62), Expect = 6.1
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 60 APLLVEENGAIPKTPVQYLLPEAKAQ--DSDKICVVIDLDETLVHSSFKPVNNADF---- 113
A +L ++ I TP L + KA+ DS K CVV++ + T F VN D
Sbjct: 16857 ADVLEDDRTHIKTTPATLALEKIKAKRSDSGKYCVVVE-NSTGSRKGFCQVNVVDRPGPP 16915
Query: 114 IIPVEIDGVVHQVYVLK-RPHVDE 136
+ PV D V V+ +P +D+
Sbjct: 16916 VGPVSFDEVTKDYMVISWKPPLDD 16939
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 28.5 bits (62), Expect = 6.1
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 60 APLLVEENGAIPKTPVQYLLPEAKAQ--DSDKICVVIDLDETLVHSSFKPVNNADF---- 113
A +L ++ I TP L + KA+ DS K CVV++ + T F VN D
Sbjct: 10552 ADVLEDDRTHIKTTPATLALEKIKAKRSDSGKYCVVVE-NSTGSRKGFCQVNVVDRPGPP 10610
Query: 114 IIPVEIDGVVHQVYVLK-RPHVDE 136
+ PV D V V+ +P +D+
Sbjct: 10611 VGPVSFDEVTKDYMVISWKPPLDD 10634
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 28.5 bits (62), Expect = 6.1
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 60 APLLVEENGAIPKTPVQYLLPEAKAQ--DSDKICVVIDLDETLVHSSFKPVNNADF---- 113
A +L ++ I TP L + KA+ DS K CVV++ + T F VN D
Sbjct: 10485 ADVLEDDRTHIKTTPATLALEKIKAKRSDSGKYCVVVE-NSTGSRKGFCQVNVVDRPGPP 10543
Query: 114 IIPVEIDGVVHQVYVLK-RPHVDE 136
+ PV D V V+ +P +D+
Sbjct: 10544 VGPVSFDEVTKDYMVISWKPPLDD 10567
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 28.5 bits (62), Expect = 6.1
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 60 APLLVEENGAIPKTPVQYLLPEAKAQ--DSDKICVVIDLDETLVHSSFKPVNNADF---- 113
A +L ++ I TP L + KA+ DS K CVV++ + T F VN D
Sbjct: 10360 ADVLEDDRTHIKTTPATLALEKIKAKRSDSGKYCVVVE-NSTGSRKGFCQVNVVDRPGPP 10418
Query: 114 IIPVEIDGVVHQVYVLK-RPHVDE 136
+ PV D V V+ +P +D+
Sbjct: 10419 VGPVSFDEVTKDYMVISWKPPLDD 10442
>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
Length = 625
Score = 28.5 bits (62), Expect = 6.1
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 4 SAVITQISKEEARGPLRG-KGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGAPL 62
SA++ + +EE G G G ++ AS P S+G A+P + P
Sbjct: 16 SAMVDPVPEEEKAGAEPGDSGGDEAVASVPPDSQGAQEPAASSASASASAAVPRKAEVPC 75
Query: 63 LVEENGAIPKTPVQYL 78
E G ++P+ +L
Sbjct: 76 AAAEGGRREQSPLLHL 91
>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 28.5 bits (62), Expect = 6.1
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 4 SAVITQISKEEARGPLRG-KGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGAPL 62
SA++ + +EE G G G ++ AS P S+G A+P + P
Sbjct: 16 SAMVDPVPEEEKAGAEPGDSGGDEAVASVPPDSQGAQEPAASSASASASAAVPRKAEVPC 75
Query: 63 LVEENGAIPKTPVQYL 78
E G ++P+ +L
Sbjct: 76 AAAEGGRREQSPLLHL 91
>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 28.5 bits (62), Expect = 6.1
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 4 SAVITQISKEEARGPLRG-KGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGAPL 62
SA++ + +EE G G G ++ AS P S+G A+P + P
Sbjct: 16 SAMVDPVPEEEKAGAEPGDSGGDEAVASVPPDSQGAQEPAASSASASASAAVPRKAEVPC 75
Query: 63 LVEENGAIPKTPVQYL 78
E G ++P+ +L
Sbjct: 76 AAAEGGRREQSPLLHL 91
>gi|18699734 uridine-cytidine kinase 2 [Homo sapiens]
Length = 261
Score = 28.1 bits (61), Expect = 8.0
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 146 ECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHR--GNYVKDLSRLGRDLRRVL 202
+ VLF LA Y+ V DL F+ +LF ++ R ++D+S GRDL ++L
Sbjct: 130 DVVLFEGILAFYSQEVRDL------FQMKLFVDTDADTRLSRRVLRDISERGRDLEQIL 182
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,526,866
Number of Sequences: 37866
Number of extensions: 486242
Number of successful extensions: 973
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 26
length of query: 260
length of database: 18,247,518
effective HSP length: 100
effective length of query: 160
effective length of database: 14,460,918
effective search space: 2313746880
effective search space used: 2313746880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.