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Search of human proteins with 32171194
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32171194 spermatogenesis associated 12 [Homo sapiens]
(190 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32171194 spermatogenesis associated 12 [Homo sapiens] 397 e-111
gi|145386517 phostensin [Homo sapiens] 32 0.25
gi|199559805 phostensin [Homo sapiens] 32 0.25
gi|239754830 PREDICTED: hypothetical protein [Homo sapiens] 31 0.56
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 31 0.73
gi|85362735 nuclear receptor subfamily 1, group H, member 2 [Hom... 28 3.6
gi|193788640 dopachrome tautomerase isoform 2 [Homo sapiens] 28 4.8
gi|6041667 dopachrome tautomerase isoform 1 [Homo sapiens] 28 4.8
gi|150418009 transforming, acidic coiled-coil containing protein... 28 4.8
gi|4504673 interleukin 6 receptor isoform 1 precursor [Homo sapi... 28 6.2
gi|58530863 melanoma antigen family A, 10 [Homo sapiens] 28 6.2
gi|10567820 melanoma antigen family A, 10 [Homo sapiens] 28 6.2
gi|110431352 transducer of regulated CREB protein 3 isoform b [H... 28 6.2
gi|110431354 transducer of regulated CREB protein 3 isoform a [H... 28 6.2
gi|20270323 zinc finger protein 653 [Homo sapiens] 28 6.2
gi|221316624 dystonin isoform 4 [Homo sapiens] 27 8.1
gi|221316622 dystonin isoform 3 [Homo sapiens] 27 8.1
gi|221316618 dystonin isoform 2 [Homo sapiens] 27 8.1
gi|34577047 dystonin isoform 1 [Homo sapiens] 27 8.1
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 27 8.1
>gi|32171194 spermatogenesis associated 12 [Homo sapiens]
Length = 190
Score = 397 bits (1019), Expect = e-111
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MSSSALTCGSTLEKSGDTWEMKALDSSRLVPWPPRGLGSSTQHPNKPHCALASCQGPGVL 60
MSSSALTCGSTLEKSGDTWEMKALDSSRLVPWPPRGLGSSTQHPNKPHCALASCQGPGVL
Sbjct: 1 MSSSALTCGSTLEKSGDTWEMKALDSSRLVPWPPRGLGSSTQHPNKPHCALASCQGPGVL 60
Query: 61 PGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQINLLGRPSSPPALLIQQGSCEQ 120
PGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQINLLGRPSSPPALLIQQGSCEQ
Sbjct: 61 PGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQINLLGRPSSPPALLIQQGSCEQ 120
Query: 121 VIHNSTPQFLGMEDGDNERTTGWLWRLCEDIDAEPSSTGCSRSNQLTFTEGCFVRSLSTV 180
VIHNSTPQFLGMEDGDNERTTGWLWRLCEDIDAEPSSTGCSRSNQLTFTEGCFVRSLSTV
Sbjct: 121 VIHNSTPQFLGMEDGDNERTTGWLWRLCEDIDAEPSSTGCSRSNQLTFTEGCFVRSLSTV 180
Query: 181 YSNTHIHTHL 190
YSNTHIHTHL
Sbjct: 181 YSNTHIHTHL 190
>gi|145386517 phostensin [Homo sapiens]
Length = 613
Score = 32.3 bits (72), Expect = 0.25
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 14 KSGDTWEMKALDSSRLVPWPPRGLGSSTQHPNKPHCALASCQGPGVLPGAASALPE 69
K + W+ L+S + W PR + + TQ P P A + PGV G A E
Sbjct: 327 KPTEGWKW-TLNSGKAREWTPRDIEAQTQKPEPPESAEKLLESPGVEAGEGEAEKE 381
>gi|199559805 phostensin [Homo sapiens]
Length = 613
Score = 32.3 bits (72), Expect = 0.25
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 14 KSGDTWEMKALDSSRLVPWPPRGLGSSTQHPNKPHCALASCQGPGVLPGAASALPE 69
K + W+ L+S + W PR + + TQ P P A + PGV G A E
Sbjct: 327 KPTEGWKW-TLNSGKAREWTPRDIEAQTQKPEPPESAEKLLESPGVEAGEGEAEKE 381
>gi|239754830 PREDICTED: hypothetical protein [Homo sapiens]
Length = 320
Score = 31.2 bits (69), Expect = 0.56
Identities = 35/98 (35%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 51 LASCQGPGVL---PGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQINLLGRPSS 107
LAS QG G L PG LP L+ QG+ Q L +L + +++ L RP
Sbjct: 158 LASGQGSGTLAGTPGRRGVLPSLS-QGE-------QGLLPP--TLPLLQARLWLRSRPRE 207
Query: 108 PPALLIQQGSCEQV--IHNSTPQFLGMEDGDNERTTGW 143
P LL+Q G QV PQFLG E GW
Sbjct: 208 GPGLLLQPGLPFQVGGPAGLQPQFLGEGLQAPEVVIGW 245
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 30.8 bits (68), Expect = 0.73
Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 10/127 (7%)
Query: 38 GSSTQHPNKPHCALASCQGPGVLPGAASALPELTFQGDVCQSETCQRYLQAAISLD--IA 95
GS+ Q PH A+A C PG+ P + + Q + +A+ LD +
Sbjct: 7040 GSAPQEGCSPHPAVAPCPPGSFPPGSCKEAPLVPSSPFLGQPQAPPAPAKASPPLDSKMG 7099
Query: 96 VSQINLLGRPSSPPALLIQQGSCEQVIHNSTPQF------LGMEDGDNERTTGWLWRLCE 149
I+L GRP P GS Q + +G E G + GW +
Sbjct: 7100 PGDISLPGRPKPGPC--SSPGSASQASSSQVSSLRVGSSQVGTEPGPSLDAEGWTQEAED 7157
Query: 150 DIDAEPS 156
D+ P+
Sbjct: 7158 LSDSTPT 7164
>gi|85362735 nuclear receptor subfamily 1, group H, member 2 [Homo
sapiens]
Length = 461
Score = 28.5 bits (62), Expect = 3.6
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 39 SSTQHPNKPHCALASCQGPGVLPGAASALPELTFQGDVCQSETCQR-YLQAAISLDIAVS 97
S +Q P P + +S GPG PG + A + + +G+ Q Q +Q ++ + +
Sbjct: 180 SQSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCN 239
Query: 98 QINLLGRPSSPP 109
+ + +P P
Sbjct: 240 KRSFSDQPKVTP 251
>gi|193788640 dopachrome tautomerase isoform 2 [Homo sapiens]
Length = 552
Score = 28.1 bits (61), Expect = 4.8
Identities = 34/115 (29%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 51 LASCQGPGVLPGAASALPELTFQGD-VCQSETCQRYLQAAISLDIAVSQ--------INL 101
L SC G +LPGA P + D + E C R A S ++ SQ +
Sbjct: 9 LLSCLGCKILPGAQGQFPRVCMTVDSLVNKECCPRL--GAESANVCGSQQGRGQCTEVRA 66
Query: 102 LGRPSSPPALLIQQGSCE----QVIHNS---TPQFLGMEDGDNERTTGWLWRLCE 149
RP S P +L Q E + H + T F G GD + GW CE
Sbjct: 67 DTRPWSGPYILRNQDDRELWPRKFFHRTCKCTGNFAGYNCGDCK--FGWTGPNCE 119
>gi|6041667 dopachrome tautomerase isoform 1 [Homo sapiens]
Length = 519
Score = 28.1 bits (61), Expect = 4.8
Identities = 34/115 (29%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 51 LASCQGPGVLPGAASALPELTFQGD-VCQSETCQRYLQAAISLDIAVSQ--------INL 101
L SC G +LPGA P + D + E C R A S ++ SQ +
Sbjct: 9 LLSCLGCKILPGAQGQFPRVCMTVDSLVNKECCPRL--GAESANVCGSQQGRGQCTEVRA 66
Query: 102 LGRPSSPPALLIQQGSCE----QVIHNS---TPQFLGMEDGDNERTTGWLWRLCE 149
RP S P +L Q E + H + T F G GD + GW CE
Sbjct: 67 DTRPWSGPYILRNQDDRELWPRKFFHRTCKCTGNFAGYNCGDCK--FGWTGPNCE 119
>gi|150418009 transforming, acidic coiled-coil containing protein 2
isoform a [Homo sapiens]
Length = 2948
Score = 28.1 bits (61), Expect = 4.8
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 9 GSTLEKSGDTWEMKALDSSRL-----VPWPPRG------LGSSTQHPNKPHCALASCQGP 57
G L S D A D+SR VP PP+G LG + ++ + SC G
Sbjct: 752 GEGLLTSPDQPRGPACDASRQEFHAGVPHPPQGENLAADLGLTALILDQDQQGIPSCPGE 811
Query: 58 GVLPGAASALPELT 71
G + GAAS P L+
Sbjct: 812 GWIRGAASEWPLLS 825
>gi|4504673 interleukin 6 receptor isoform 1 precursor [Homo
sapiens]
Length = 468
Score = 27.7 bits (60), Expect = 6.2
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 1 MSSSALTCGSTLEKSGDTWEMKALDSSRLVPWPPRGLGSSTQHPNKPHCALASCQGPGVL 60
++ L C + + + TW+++AL + PP LG +P L P V
Sbjct: 374 LAFGTLLCIAIVLRFKKTWKLRALKEGKTSMHPPYSLGQLVPERPRPTPVLVPLISPPVS 433
Query: 61 PGA 63
P +
Sbjct: 434 PSS 436
>gi|58530863 melanoma antigen family A, 10 [Homo sapiens]
Length = 369
Score = 27.7 bits (60), Expect = 6.2
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 29 LVPWPPRGLGSSTQHPNKPHCALASCQGPGVLPGAASALPELTFQGDVCQSETCQRYLQ 87
L+P P + + + PN P A +C P V+ AS + + +G Q E LQ
Sbjct: 66 LIPSTPEEVSADDETPNPPQSAQIACSSPSVV---ASLPLDQSDEGSSSQKEESPSTLQ 121
>gi|10567820 melanoma antigen family A, 10 [Homo sapiens]
Length = 369
Score = 27.7 bits (60), Expect = 6.2
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 29 LVPWPPRGLGSSTQHPNKPHCALASCQGPGVLPGAASALPELTFQGDVCQSETCQRYLQ 87
L+P P + + + PN P A +C P V+ AS + + +G Q E LQ
Sbjct: 66 LIPSTPEEVSADDETPNPPQSAQIACSSPSVV---ASLPLDQSDEGSSSQKEESPSTLQ 121
>gi|110431352 transducer of regulated CREB protein 3 isoform b [Homo
sapiens]
Length = 618
Score = 27.7 bits (60), Expect = 6.2
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 55 QGPGVLPGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQINLLGRPSSPPAL-LI 113
+ P P AAS+LP+ FQ Q + + D+ Q ++ P+ P + L+
Sbjct: 466 EAPAQQPQAASSLPQSDFQLLPAQGSSLTNFFP-----DVGFDQQSMRPGPAFPQQVPLV 520
Query: 114 QQGSCE 119
QQGS E
Sbjct: 521 QQGSRE 526
>gi|110431354 transducer of regulated CREB protein 3 isoform a [Homo
sapiens]
Length = 619
Score = 27.7 bits (60), Expect = 6.2
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 55 QGPGVLPGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQINLLGRPSSPPAL-LI 113
+ P P AAS+LP+ FQ Q + + D+ Q ++ P+ P + L+
Sbjct: 466 EAPAQQPQAASSLPQSDFQLLPAQGSSLTNFFP-----DVGFDQQSMRPGPAFPQQVPLV 520
Query: 114 QQGSCE 119
QQGS E
Sbjct: 521 QQGSRE 526
>gi|20270323 zinc finger protein 653 [Homo sapiens]
Length = 615
Score = 27.7 bits (60), Expect = 6.2
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 22 KALDSSRLVPWPPR-GLGSSTQHPNKPHCAL----ASCQGPGVLPGA 63
+AL++ VP P + G G S N P AL ASC PG++PG+
Sbjct: 271 EALETVVCVPVPVQVGAGPSALFENVPQEALGEVVASCPMPGMVPGS 317
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 27.3 bits (59), Expect = 8.1
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 45 NKPHCALASCQGPGVL---PGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQ 98
+KPH + GP +L PG ++ E D S+ + + A++LD A+SQ
Sbjct: 3933 HKPHIDKMNKTGPQLLELSPGEGFSIQEKYVAADTLYSQIKEDVKKRAVALDEAISQ 3989
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 27.3 bits (59), Expect = 8.1
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 45 NKPHCALASCQGPGVL---PGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQ 98
+KPH + GP +L PG ++ E D S+ + + A++LD A+SQ
Sbjct: 3944 HKPHIDKMNKTGPQLLELSPGEGFSIQEKYVAADTLYSQIKEDVKKRAVALDEAISQ 4000
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 27.3 bits (59), Expect = 8.1
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 45 NKPHCALASCQGPGVL---PGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQ 98
+KPH + GP +L PG ++ E D S+ + + A++LD A+SQ
Sbjct: 4082 HKPHIDKMNKTGPQLLELSPGEGFSIQEKYVAADTLYSQIKEDVKKRAVALDEAISQ 4138
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 27.3 bits (59), Expect = 8.1
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 45 NKPHCALASCQGPGVL---PGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQ 98
+KPH + GP +L PG ++ E D S+ + + A++LD A+SQ
Sbjct: 3904 HKPHIDKMNKTGPQLLELSPGEGFSIQEKYVAADTLYSQIKEDVKKRAVALDEAISQ 3960
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 27.3 bits (59), Expect = 8.1
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 45 NKPHCALASCQGPGVL---PGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQ 98
+KPH + GP +L PG ++ E D S+ + + A++LD A+SQ
Sbjct: 3578 HKPHIDKMNKTGPQLLELSPGEGFSIQEKYVAADTLYSQIKEDVKKRAVALDEAISQ 3634
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,458,348
Number of Sequences: 37866
Number of extensions: 393662
Number of successful extensions: 1056
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1051
Number of HSP's gapped (non-prelim): 20
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.