Search of human proteins with 31795563

Search of human proteins with 31795563

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|31795563 tryptophan hydroxylase 2 [Homo sapiens]
         (490 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|31795563 tryptophan hydroxylase 2 [Homo sapiens]                   999   0.0  
gi|4759248 tryptophan hydroxylase 1 [Homo sapiens]                    677   0.0  
gi|4557819 phenylalanine hydroxylase [Homo sapiens]                   503   e-142
gi|88900505 tyrosine hydroxylase isoform c [Homo sapiens]             438   e-123
gi|88900501 tyrosine hydroxylase isoform a [Homo sapiens]             438   e-123
gi|88900503 tyrosine hydroxylase isoform b [Homo sapiens]             438   e-123
gi|29788755 SET binding factor 2 [Homo sapiens]                        37   0.053
gi|40807489 egf-like module containing, mucin-like, hormone rece...    36   0.091
gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Ho...    33   0.59 
gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Hom...    32   1.0  
gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b...    32   1.3  
gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a...    32   1.3  
gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b...    32   1.3  
gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a...    32   1.3  
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1...    32   1.3  
gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein ...    30   3.8  
gi|239752620 PREDICTED: similar to heterogeneous nuclear ribonuc...    30   3.8  
gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Hom...    30   3.8  
gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens]     30   3.8  
gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens]     30   3.8  
gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens]     30   3.8  
gi|149274614 melanoma antigen family D, 4 [Homo sapiens]               30   3.8  

>gi|31795563 tryptophan hydroxylase 2 [Homo sapiens]
          Length = 490

 Score =  999 bits (2584), Expect = 0.0
 Identities = 490/490 (100%), Positives = 490/490 (100%)

Query: 1   MQPAMMMFSSKYWARRGFSLDSAVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATE 60
           MQPAMMMFSSKYWARRGFSLDSAVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATE
Sbjct: 1   MQPAMMMFSSKYWARRGFSLDSAVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATE 60

Query: 61  SGKTAVVFSLKNEVGGLVKALRLFQEKRVNMVHIESRKSRRRSSEVEIFVDCECGKTEFN 120
           SGKTAVVFSLKNEVGGLVKALRLFQEKRVNMVHIESRKSRRRSSEVEIFVDCECGKTEFN
Sbjct: 61  SGKTAVVFSLKNEVGGLVKALRLFQEKRVNMVHIESRKSRRRSSEVEIFVDCECGKTEFN 120

Query: 121 ELIQLLKFQTTIVTLNPPENIWTEEEELEDVPWFPRKISELDKCSHRVLMYGSELDADHP 180
           ELIQLLKFQTTIVTLNPPENIWTEEEELEDVPWFPRKISELDKCSHRVLMYGSELDADHP
Sbjct: 121 ELIQLLKFQTTIVTLNPPENIWTEEEELEDVPWFPRKISELDKCSHRVLMYGSELDADHP 180

Query: 181 GFKDNVYRQRRKYFVDVAMGYKYGQPIPRVEYTEEETKTWGVVFRELSKLYPTHACREYL 240
           GFKDNVYRQRRKYFVDVAMGYKYGQPIPRVEYTEEETKTWGVVFRELSKLYPTHACREYL
Sbjct: 181 GFKDNVYRQRRKYFVDVAMGYKYGQPIPRVEYTEEETKTWGVVFRELSKLYPTHACREYL 240

Query: 241 KNFPLLTKYCGYREDNVPQLEDVSMFLKERSGFTVRPVAGYLSPRDFLAGLAYRVFHCTQ 300
           KNFPLLTKYCGYREDNVPQLEDVSMFLKERSGFTVRPVAGYLSPRDFLAGLAYRVFHCTQ
Sbjct: 241 KNFPLLTKYCGYREDNVPQLEDVSMFLKERSGFTVRPVAGYLSPRDFLAGLAYRVFHCTQ 300

Query: 301 YIRHGSDPLYTPEPDTCHELLGHVPLLADPKFAQFSQEIGLASLGASDEDVQKLATCYFF 360
           YIRHGSDPLYTPEPDTCHELLGHVPLLADPKFAQFSQEIGLASLGASDEDVQKLATCYFF
Sbjct: 301 YIRHGSDPLYTPEPDTCHELLGHVPLLADPKFAQFSQEIGLASLGASDEDVQKLATCYFF 360

Query: 361 TIEFGLCKQEGQLRAYGAGLLSSIGELKHALSDKACVKAFDPKTTCLQECLITTFQEAYF 420
           TIEFGLCKQEGQLRAYGAGLLSSIGELKHALSDKACVKAFDPKTTCLQECLITTFQEAYF
Sbjct: 361 TIEFGLCKQEGQLRAYGAGLLSSIGELKHALSDKACVKAFDPKTTCLQECLITTFQEAYF 420

Query: 421 VSESFEEAKEKMRDFAKSITRPFSVYFNPYTQSIEILKDTRSIENVVQDLRSDLNTVCDA 480
           VSESFEEAKEKMRDFAKSITRPFSVYFNPYTQSIEILKDTRSIENVVQDLRSDLNTVCDA
Sbjct: 421 VSESFEEAKEKMRDFAKSITRPFSVYFNPYTQSIEILKDTRSIENVVQDLRSDLNTVCDA 480

Query: 481 LNKMNQYLGI 490
           LNKMNQYLGI
Sbjct: 481 LNKMNQYLGI 490


>gi|4759248 tryptophan hydroxylase 1 [Homo sapiens]
          Length = 444

 Score =  677 bits (1747), Expect = 0.0
 Identities = 317/442 (71%), Positives = 382/442 (86%), Gaps = 5/442 (1%)

Query: 45  DDKGNKGSSKREAATESGKTAVVFSLKNEVGGLVKALRLFQEKRVNMVHIESRKSRRRSS 104
           D+K NK  S      E G+ +++FSLKNEVGGL+KAL++FQEK VN++HIESRKS+RR+S
Sbjct: 4   DNKENKDHS-----LERGRASLIFSLKNEVGGLIKALKIFQEKHVNLLHIESRKSKRRNS 58

Query: 105 EVEIFVDCECGKTEFNELIQLLKFQTTIVTLNPPENIWTEEEELEDVPWFPRKISELDKC 164
           E EIFVDC+  + + N++  LLK  T ++++N P+N   +E+ +E VPWFP+KIS+LD C
Sbjct: 59  EFEIFVDCDINREQLNDIFHLLKSHTNVLSVNLPDNFTLKEDGMETVPWFPKKISDLDHC 118

Query: 165 SHRVLMYGSELDADHPGFKDNVYRQRRKYFVDVAMGYKYGQPIPRVEYTEEETKTWGVVF 224
           ++RVLMYGSELDADHPGFKDNVYR+RRKYF D+AM YK+G PIP+VE+TEEE KTWG VF
Sbjct: 119 ANRVLMYGSELDADHPGFKDNVYRKRRKYFADLAMNYKHGDPIPKVEFTEEEIKTWGTVF 178

Query: 225 RELSKLYPTHACREYLKNFPLLTKYCGYREDNVPQLEDVSMFLKERSGFTVRPVAGYLSP 284
           +EL+KLYPTHACREYLKN PLL+KYCGYREDN+PQLEDVS FLKER+GF++RPVAGYLSP
Sbjct: 179 QELNKLYPTHACREYLKNLPLLSKYCGYREDNIPQLEDVSNFLKERTGFSIRPVAGYLSP 238

Query: 285 RDFLAGLAYRVFHCTQYIRHGSDPLYTPEPDTCHELLGHVPLLADPKFAQFSQEIGLASL 344
           RDFL+GLA+RVFHCTQY+RH SDP YTPEPDTCHELLGHVPLLA+P FAQFSQEIGLASL
Sbjct: 239 RDFLSGLAFRVFHCTQYVRHSSDPFYTPEPDTCHELLGHVPLLAEPSFAQFSQEIGLASL 298

Query: 345 GASDEDVQKLATCYFFTIEFGLCKQEGQLRAYGAGLLSSIGELKHALSDKACVKAFDPKT 404
           GAS+E VQKLATCYFFT+EFGLCKQ+GQLR +GAGLLSSI ELKHALS  A VK FDPK 
Sbjct: 299 GASEEAVQKLATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGHAKVKPFDPKI 358

Query: 405 TCLQECLITTFQEAYFVSESFEEAKEKMRDFAKSITRPFSVYFNPYTQSIEILKDTRSIE 464
           TC QECLITTFQ+ YFVSESFE+AKEKMR+F K+I RPF V +NPYT+SI+ILKDT+SI 
Sbjct: 359 TCKQECLITTFQDVYFVSESFEDAKEKMREFTKTIKRPFGVKYNPYTRSIQILKDTKSIT 418

Query: 465 NVVQDLRSDLNTVCDALNKMNQ 486
           + + +L+ DL+ V DAL K+++
Sbjct: 419 SAMNELQHDLDVVSDALAKVSR 440


>gi|4557819 phenylalanine hydroxylase [Homo sapiens]
          Length = 452

 Score =  503 bits (1296), Expect = e-142
 Identities = 247/455 (54%), Positives = 321/455 (70%), Gaps = 5/455 (1%)

Query: 31  LGSSTLNKPNSGKN-DDKGNKGSSKREAATESGKTAVVFSLKNEVGGLVKALRLFQEKRV 89
           + ++ L  P  G+   D G + S   +   ++G  +++FSLK EVG L K LRLF+E  V
Sbjct: 1   MSTAVLENPGLGRKLSDFGQETSYIEDNCNQNGAISLIFSLKEEVGALAKVLRLFEENDV 60

Query: 90  NMVHIESRKSRRRSSEVEIFVDCECGKTEFNELIQLLKFQTTIVTLNPPENIWTEEEELE 149
           N+ HIESR SR +  E E F   +  K     L  ++K     +     E   + +++ +
Sbjct: 61  NLTHIESRPSRLKKDEYEFFTHLD--KRSLPALTNIIKILRHDIGATVHE--LSRDKKKD 116

Query: 150 DVPWFPRKISELDKCSHRVLMYGSELDADHPGFKDNVYRQRRKYFVDVAMGYKYGQPIPR 209
            VPWFPR I ELD+ ++++L YG+ELDADHPGFKD VYR RRK F D+A  Y++GQPIPR
Sbjct: 117 TVPWFPRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRHGQPIPR 176

Query: 210 VEYTEEETKTWGVVFRELSKLYPTHACREYLKNFPLLTKYCGYREDNVPQLEDVSMFLKE 269
           VEY EEE KTWG VF+ L  LY THAC EY   FPLL KYCG+ EDN+PQLEDVS FL+ 
Sbjct: 177 VEYMEEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDNIPQLEDVSQFLQT 236

Query: 270 RSGFTVRPVAGYLSPRDFLAGLAYRVFHCTQYIRHGSDPLYTPEPDTCHELLGHVPLLAD 329
            +GF +RPVAG LS RDFL GLA+RVFHCTQYIRHGS P+YTPEPD CHELLGHVPL +D
Sbjct: 237 CTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFSD 296

Query: 330 PKFAQFSQEIGLASLGASDEDVQKLATCYFFTIEFGLCKQEGQLRAYGAGLLSSIGELKH 389
             FAQFSQEIGLASLGA DE ++KLAT Y+FT+EFGLCKQ   ++AYGAGLLSS GEL++
Sbjct: 297 RSFAQFSQEIGLASLGAPDEYIEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQY 356

Query: 390 ALSDKACVKAFDPKTTCLQECLITTFQEAYFVSESFEEAKEKMRDFAKSITRPFSVYFNP 449
            LS+K  +   + + T +Q   +T FQ  Y+V+ESF +AKEK+R+FA +I RPFSV ++P
Sbjct: 357 CLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRPFSVRYDP 416

Query: 450 YTQSIEILKDTRSIENVVQDLRSDLNTVCDALNKM 484
           YTQ IE+L +T+ ++ +   + S++  +C AL K+
Sbjct: 417 YTQRIEVLDNTQQLKILADSINSEIGILCSALQKI 451


>gi|88900505 tyrosine hydroxylase isoform c [Homo sapiens]
          Length = 524

 Score =  438 bits (1127), Expect = e-123
 Identities = 215/409 (52%), Positives = 290/409 (70%), Gaps = 13/409 (3%)

Query: 77  LVKALRLFQEKRVNMVHIESRKSRRRSS---EVEIFVDCECGKTEFNELIQLLKFQTTIV 133
           L +A+++F+     + H+E+R ++R  +    +E FV  E  + +   L+  ++ Q +  
Sbjct: 123 LSRAVKVFETFEAKIHHLETRPAQRPRAGGPHLEYFVRLEVRRGDLAALLSGVR-QVSED 181

Query: 134 TLNPPENIWTEEEELEDVPWFPRKISELDKCSHRVLMYGSELDADHPGFKDNVYRQRRKY 193
             +P             VPWFPRK+SELDKC H V  +  +LD DHPGF D VYRQRRK 
Sbjct: 182 VRSPAG---------PKVPWFPRKVSELDKCHHLVTKFDPDLDLDHPGFSDQVYRQRRKL 232

Query: 194 FVDVAMGYKYGQPIPRVEYTEEETKTWGVVFRELSKLYPTHACREYLKNFPLLTKYCGYR 253
             ++A  Y++G PIPRVEYT EE  TW  V+  L  LY THAC E+L+ F LL ++ GYR
Sbjct: 233 IAEIAFQYRHGDPIPRVEYTAEEIATWKEVYTTLKGLYATHACGEHLEAFALLERFSGYR 292

Query: 254 EDNVPQLEDVSMFLKERSGFTVRPVAGYLSPRDFLAGLAYRVFHCTQYIRHGSDPLYTPE 313
           EDN+PQLEDVS FLKER+GF +RPVAG LS RDFLA LA+RVF CTQYIRH S P+++PE
Sbjct: 293 EDNIPQLEDVSRFLKERTGFQLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPE 352

Query: 314 PDTCHELLGHVPLLADPKFAQFSQEIGLASLGASDEDVQKLATCYFFTIEFGLCKQEGQL 373
           PD CHELLGHVP+LAD  FAQFSQ+IGLASLGASDE+++KL+T Y+FT+EFGLCKQ G++
Sbjct: 353 PDCCHELLGHVPMLADRTFAQFSQDIGLASLGASDEEIEKLSTLYWFTVEFGLCKQNGEV 412

Query: 374 RAYGAGLLSSIGELKHALSDKACVKAFDPKTTCLQECLITTFQEAYFVSESFEEAKEKMR 433
           +AYGAGLLSS GEL H LS++  ++AFDP+   +Q     T+Q  YFVSESF +AK+K+R
Sbjct: 413 KAYGAGLLSSYGELLHCLSEEPEIRAFDPEAAAVQPYQDQTYQSVYFVSESFSDAKDKLR 472

Query: 434 DFAKSITRPFSVYFNPYTQSIEILKDTRSIENVVQDLRSDLNTVCDALN 482
            +A  I RPFSV F+PYT +I++L   +++   ++ ++ +L+T+  AL+
Sbjct: 473 SYASRIQRPFSVKFDPYTLAIDVLDSPQAVRRSLEGVQDELDTLAHALS 521


>gi|88900501 tyrosine hydroxylase isoform a [Homo sapiens]
          Length = 528

 Score =  438 bits (1127), Expect = e-123
 Identities = 215/409 (52%), Positives = 290/409 (70%), Gaps = 13/409 (3%)

Query: 77  LVKALRLFQEKRVNMVHIESRKSRRRSS---EVEIFVDCECGKTEFNELIQLLKFQTTIV 133
           L +A+++F+     + H+E+R ++R  +    +E FV  E  + +   L+  ++ Q +  
Sbjct: 127 LSRAVKVFETFEAKIHHLETRPAQRPRAGGPHLEYFVRLEVRRGDLAALLSGVR-QVSED 185

Query: 134 TLNPPENIWTEEEELEDVPWFPRKISELDKCSHRVLMYGSELDADHPGFKDNVYRQRRKY 193
             +P             VPWFPRK+SELDKC H V  +  +LD DHPGF D VYRQRRK 
Sbjct: 186 VRSPAG---------PKVPWFPRKVSELDKCHHLVTKFDPDLDLDHPGFSDQVYRQRRKL 236

Query: 194 FVDVAMGYKYGQPIPRVEYTEEETKTWGVVFRELSKLYPTHACREYLKNFPLLTKYCGYR 253
             ++A  Y++G PIPRVEYT EE  TW  V+  L  LY THAC E+L+ F LL ++ GYR
Sbjct: 237 IAEIAFQYRHGDPIPRVEYTAEEIATWKEVYTTLKGLYATHACGEHLEAFALLERFSGYR 296

Query: 254 EDNVPQLEDVSMFLKERSGFTVRPVAGYLSPRDFLAGLAYRVFHCTQYIRHGSDPLYTPE 313
           EDN+PQLEDVS FLKER+GF +RPVAG LS RDFLA LA+RVF CTQYIRH S P+++PE
Sbjct: 297 EDNIPQLEDVSRFLKERTGFQLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPE 356

Query: 314 PDTCHELLGHVPLLADPKFAQFSQEIGLASLGASDEDVQKLATCYFFTIEFGLCKQEGQL 373
           PD CHELLGHVP+LAD  FAQFSQ+IGLASLGASDE+++KL+T Y+FT+EFGLCKQ G++
Sbjct: 357 PDCCHELLGHVPMLADRTFAQFSQDIGLASLGASDEEIEKLSTLYWFTVEFGLCKQNGEV 416

Query: 374 RAYGAGLLSSIGELKHALSDKACVKAFDPKTTCLQECLITTFQEAYFVSESFEEAKEKMR 433
           +AYGAGLLSS GEL H LS++  ++AFDP+   +Q     T+Q  YFVSESF +AK+K+R
Sbjct: 417 KAYGAGLLSSYGELLHCLSEEPEIRAFDPEAAAVQPYQDQTYQSVYFVSESFSDAKDKLR 476

Query: 434 DFAKSITRPFSVYFNPYTQSIEILKDTRSIENVVQDLRSDLNTVCDALN 482
            +A  I RPFSV F+PYT +I++L   +++   ++ ++ +L+T+  AL+
Sbjct: 477 SYASRIQRPFSVKFDPYTLAIDVLDSPQAVRRSLEGVQDELDTLAHALS 525


>gi|88900503 tyrosine hydroxylase isoform b [Homo sapiens]
          Length = 497

 Score =  438 bits (1127), Expect = e-123
 Identities = 215/409 (52%), Positives = 290/409 (70%), Gaps = 13/409 (3%)

Query: 77  LVKALRLFQEKRVNMVHIESRKSRRRSS---EVEIFVDCECGKTEFNELIQLLKFQTTIV 133
           L +A+++F+     + H+E+R ++R  +    +E FV  E  + +   L+  ++ Q +  
Sbjct: 96  LSRAVKVFETFEAKIHHLETRPAQRPRAGGPHLEYFVRLEVRRGDLAALLSGVR-QVSED 154

Query: 134 TLNPPENIWTEEEELEDVPWFPRKISELDKCSHRVLMYGSELDADHPGFKDNVYRQRRKY 193
             +P             VPWFPRK+SELDKC H V  +  +LD DHPGF D VYRQRRK 
Sbjct: 155 VRSPAG---------PKVPWFPRKVSELDKCHHLVTKFDPDLDLDHPGFSDQVYRQRRKL 205

Query: 194 FVDVAMGYKYGQPIPRVEYTEEETKTWGVVFRELSKLYPTHACREYLKNFPLLTKYCGYR 253
             ++A  Y++G PIPRVEYT EE  TW  V+  L  LY THAC E+L+ F LL ++ GYR
Sbjct: 206 IAEIAFQYRHGDPIPRVEYTAEEIATWKEVYTTLKGLYATHACGEHLEAFALLERFSGYR 265

Query: 254 EDNVPQLEDVSMFLKERSGFTVRPVAGYLSPRDFLAGLAYRVFHCTQYIRHGSDPLYTPE 313
           EDN+PQLEDVS FLKER+GF +RPVAG LS RDFLA LA+RVF CTQYIRH S P+++PE
Sbjct: 266 EDNIPQLEDVSRFLKERTGFQLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPE 325

Query: 314 PDTCHELLGHVPLLADPKFAQFSQEIGLASLGASDEDVQKLATCYFFTIEFGLCKQEGQL 373
           PD CHELLGHVP+LAD  FAQFSQ+IGLASLGASDE+++KL+T Y+FT+EFGLCKQ G++
Sbjct: 326 PDCCHELLGHVPMLADRTFAQFSQDIGLASLGASDEEIEKLSTLYWFTVEFGLCKQNGEV 385

Query: 374 RAYGAGLLSSIGELKHALSDKACVKAFDPKTTCLQECLITTFQEAYFVSESFEEAKEKMR 433
           +AYGAGLLSS GEL H LS++  ++AFDP+   +Q     T+Q  YFVSESF +AK+K+R
Sbjct: 386 KAYGAGLLSSYGELLHCLSEEPEIRAFDPEAAAVQPYQDQTYQSVYFVSESFSDAKDKLR 445

Query: 434 DFAKSITRPFSVYFNPYTQSIEILKDTRSIENVVQDLRSDLNTVCDALN 482
            +A  I RPFSV F+PYT +I++L   +++   ++ ++ +L+T+  AL+
Sbjct: 446 SYASRIQRPFSVKFDPYTLAIDVLDSPQAVRRSLEGVQDELDTLAHALS 494


>gi|29788755 SET binding factor 2 [Homo sapiens]
          Length = 1849

 Score = 36.6 bits (83), Expect = 0.053
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 87   KRVNMVHIESRKSRRRSSEVEIFVDCECGKTEFNELIQLLKFQTTIVTLNPPENIWTEEE 146
            KR   ++I   KS+ R+ +VE  ++CE    EF+E+ Q+      ++    P  I T+ E
Sbjct: 1311 KRQAALYIFGEKSQLRNFKVEFALNCEFVPVEFHEIRQVKASFKKLMRACIPSTIPTDSE 1370

Query: 147  -----ELEDVPWFPR--KISELDKCSHRVLMYGSEL 175
                  L D  WFP+  +I +L      VL  GS +
Sbjct: 1371 VTFLKALGDSEWFPQLHRIMQLAVVVSEVLENGSSV 1406


>gi|40807489 egf-like module containing, mucin-like, hormone
           receptor-like sequence 1 [Homo sapiens]
          Length = 886

 Score = 35.8 bits (81), Expect = 0.091
 Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 306 SDPLYTPEPDTCHELLGHVPLLADPKFAQFSQEIGLASLGASDEDVQKL-------ATC- 357
           +DP   PE  TC+  +G+     +P F   S  +    L AS ED+ +        +TC 
Sbjct: 177 ADPRACPEHATCNNTVGNYSCFCNPGFESSSGHLSFQGLKASCEDIDECTEMCPINSTCT 236

Query: 358 -----YFFTIEFGLCKQEGQLRAYGAGL 380
                YF T   G     GQL     G+
Sbjct: 237 NTPGSYFCTCHPGFAPSNGQLNFTDQGV 264


>gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Homo
           sapiens]
          Length = 293

 Score = 33.1 bits (74), Expect = 0.59
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 22  SAVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATESGKTAV---VFSLKNEVGGLV 78
           + VP + Q L  +T  +  SG N   G +GSSK          A+   +  +K +V  L+
Sbjct: 139 AVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLL 198

Query: 79  KAL-RLFQEKRVNMVHIESRKSRRRSS 104
           + L ++ +E+    V +++ KS    S
Sbjct: 199 ENLEKIEKEQSKQEVEVKNAKSEEEQS 225


>gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Homo
           sapiens]
          Length = 293

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 22  SAVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATESGKTAV---VFSLKNEVGGLV 78
           + VP + Q +  +T  +  SG N   G +GSSK          A+   +  +K +V  L+
Sbjct: 139 AVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLL 198

Query: 79  KAL-RLFQEKRVNMVHIESRKSRRRSS 104
           + L ++ +E+    V +++ KS    S
Sbjct: 199 ENLEKIEKEQSKQEVEVKNAKSEEEQS 225


>gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b
           [Homo sapiens]
          Length = 293

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 22  SAVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATESGKTAV---VFSLKNEVGGLV 78
           + VP + Q +  +T  +  SG N   G +GSSK          A+   +  +K +V  L+
Sbjct: 139 AVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLL 198

Query: 79  KAL-RLFQEKRVNMVHIESRKSRRRSSEVEIFVD 111
           + L ++ +E+    V +++ KS    S   +  D
Sbjct: 199 ENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKD 232


>gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a
           [Homo sapiens]
          Length = 306

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 22  SAVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATESGKTAV---VFSLKNEVGGLV 78
           + VP + Q +  +T  +  SG N   G +GSSK          A+   +  +K +V  L+
Sbjct: 152 AVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLL 211

Query: 79  KAL-RLFQEKRVNMVHIESRKSRRRSSEVEIFVD 111
           + L ++ +E+    V +++ KS    S   +  D
Sbjct: 212 ENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKD 245


>gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b
           [Homo sapiens]
          Length = 293

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 22  SAVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATESGKTAV---VFSLKNEVGGLV 78
           + VP + Q +  +T  +  SG N   G +GSSK          A+   +  +K +V  L+
Sbjct: 139 AVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLL 198

Query: 79  KAL-RLFQEKRVNMVHIESRKSRRRSSEVEIFVD 111
           + L ++ +E+    V +++ KS    S   +  D
Sbjct: 199 ENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKD 232


>gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a
           [Homo sapiens]
          Length = 306

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 22  SAVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATESGKTAV---VFSLKNEVGGLV 78
           + VP + Q +  +T  +  SG N   G +GSSK          A+   +  +K +V  L+
Sbjct: 152 AVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLL 211

Query: 79  KAL-RLFQEKRVNMVHIESRKSRRRSSEVEIFVD 111
           + L ++ +E+    V +++ KS    S   +  D
Sbjct: 212 ENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKD 245


>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
           [Homo sapiens]
          Length = 651

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 17/150 (11%)

Query: 26  EEHQLLGSSTLNKPNSGKNDD-KGNKGSSKREAATESGKTAVVFSLKNEVGGLVKALRLF 84
           EE     S        GK D+ KG K S K +   ++ K A    ++++       L L 
Sbjct: 441 EESTDADSEPKGDSKKGKKDEKKGKKDSKKDDKKKDAKKNAESTEMESD-------LELK 493

Query: 85  QEKRVNMVHIESRKSRRRSSEVEIFVDCECGKTEFNELIQLLKFQTTIVTLNPPENIWTE 144
           ++K+    H + +K  ++  + +   D E    EF+E       +T   T    +   TE
Sbjct: 494 KDKK----HSKEKKGSKKDIKKDARKDTESTDAEFDE-----SSKTGFKTSTKIKGSDTE 544

Query: 145 EEELEDVPWFPRKISELDKCSHRVLMYGSE 174
            EE    P   +KI E D  S    M G E
Sbjct: 545 SEESLYKPGAKKKIDESDGTSANSKMEGLE 574


>gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein
           C-like [Homo sapiens]
          Length = 293

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 22  SAVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATESGKTAV---VFSLKNEVGGLV 78
           + VP + Q +  +T  +  SG N   G +GSSK          A+   +  +K +V  L+
Sbjct: 139 AVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLL 198

Query: 79  KALRLFQEKRVNM-VHIESRKSRRRSS 104
           + L   +++     V +++ KS    +
Sbjct: 199 ENLEKIEKEHCKQGVEVKNAKSEEEQT 225


>gi|239752620 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein C-like [Homo sapiens]
          Length = 293

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 22  SAVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATESGKTAV---VFSLKNEVGGLV 78
           + VP + Q +  +T  +  SG N   G +GSSK          A+   +  +K +V  L+
Sbjct: 139 AVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLL 198

Query: 79  KALRLFQEKRVNM-VHIESRKSRRRSS 104
           + L   +++     V +++ KS    +
Sbjct: 199 ENLEKIEKEHCKQGVEVKNAKSEEEQT 225


>gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Homo
           sapiens]
          Length = 293

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 22  SAVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATESGKTAV---VFSLKNEVGGLV 78
           + VP + Q +  +T  +  SG N   G +GSSK          A+   +  +K +V  L+
Sbjct: 139 AVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLL 198

Query: 79  KALRLFQEKRVNM-VHIESRKSRRRSS 104
           + L   +++     V +++ KS    +
Sbjct: 199 ENLEKIEKEHCKQGVEVKNAKSEEEQT 225


>gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens]
          Length = 739

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 23  AVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATESGKTAVVFS 69
           A P+  Q+L +S +  P +     +   GS  +EAATE   +A  FS
Sbjct: 166 ASPQTSQMLVTSKMAAPEAPATSAQSQTGSPAQEAATEGPSSACAFS 212


>gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
          Length = 741

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 23  AVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATESGKTAVVFS 69
           A P+  Q+L +S +  P +     +   GS  +EAATE   +A  FS
Sbjct: 166 ASPQTSQMLVTSKMAAPEAPATSAQSQTGSPAQEAATEGPSSACAFS 212


>gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
          Length = 741

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 23  AVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATESGKTAVVFS 69
           A P+  Q+L +S +  P +     +   GS  +EAATE   +A  FS
Sbjct: 166 ASPQTSQMLVTSKMAAPEAPATSAQSQTGSPAQEAATEGPSSACAFS 212


>gi|149274614 melanoma antigen family D, 4 [Homo sapiens]
          Length = 739

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 23  AVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATESGKTAVVFS 69
           A P+  Q+L +S +  P +     +   GS  +EAATE   +A  FS
Sbjct: 166 ASPQTSQMLVTSKMAAPEAPATSAQSQTGSPAQEAATEGPSSACAFS 212


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,930,114
Number of Sequences: 37866
Number of extensions: 860802
Number of successful extensions: 2082
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2069
Number of HSP's gapped (non-prelim): 22
length of query: 490
length of database: 18,247,518
effective HSP length: 106
effective length of query: 384
effective length of database: 14,233,722
effective search space: 5465749248
effective search space used: 5465749248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.