Search of human proteins with 31745176

Search of human proteins with 31745176

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|31745176 hypothetical protein LOC51252 isoform B [Homo
sapiens]
         (119 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|31745176 hypothetical protein LOC51252 isoform B [Homo sapiens]    253   2e-68
gi|169790964 hypothetical protein LOC51252 isoform A [Homo sapiens]   253   2e-68
gi|150456436 hypothetical protein LOC55719 isoform 1 [Homo sapiens]    62   8e-11
gi|209915547 hypothetical protein LOC55719 isoform 2 [Homo sapiens]    61   2e-10
gi|20336305 B-cell CLL/lymphoma 11A isoform 1 [Homo sapiens]           30   0.32 
gi|20336307 B-cell CLL/lymphoma 11A isoform 2 [Homo sapiens]           30   0.32 
gi|23943872 small ArfGAP2 [Homo sapiens]                               28   1.2  
gi|4505725 peroxin1 [Homo sapiens]                                     28   1.6  
gi|165932385 hypothetical protein LOC388341 isoform 1 [Homo sapi...    27   4.7  
gi|45505178 cancer antigen 1 [Homo sapiens]                            26   6.1  
gi|140972063 protein phosphatase 1, regulatory subunit 9B [Homo ...    26   7.9  
gi|110347429 mediator complex subunit 12 [Homo sapiens]                26   7.9  
gi|113204622 stromal membrane-associated GTPase-activating prote...    26   7.9  
gi|21264558 stromal membrane-associated GTPase-activating protei...    26   7.9  

>gi|31745176 hypothetical protein LOC51252 isoform B [Homo sapiens]
          Length = 119

 Score =  253 bits (647), Expect = 2e-68
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MRPSSLRQYLDSVPLPPCQEQQPKASAELDHKACYLCHSLLMLAGVVVSCQDITPDQWGE 60
           MRPSSLRQYLDSVPLPPCQEQQPKASAELDHKACYLCHSLLMLAGVVVSCQDITPDQWGE
Sbjct: 1   MRPSSLRQYLDSVPLPPCQEQQPKASAELDHKACYLCHSLLMLAGVVVSCQDITPDQWGE 60

Query: 61  LQLLCMQLDRHISTQIRESPQAMHRTMLKDLATQTYIRWQELLTHCQPQAQYFSPWKDI 119
           LQLLCMQLDRHISTQIRESPQAMHRTMLKDLATQTYIRWQELLTHCQPQAQYFSPWKDI
Sbjct: 61  LQLLCMQLDRHISTQIRESPQAMHRTMLKDLATQTYIRWQELLTHCQPQAQYFSPWKDI 119


>gi|169790964 hypothetical protein LOC51252 isoform A [Homo sapiens]
          Length = 647

 Score =  253 bits (647), Expect = 2e-68
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MRPSSLRQYLDSVPLPPCQEQQPKASAELDHKACYLCHSLLMLAGVVVSCQDITPDQWGE 60
           MRPSSLRQYLDSVPLPPCQEQQPKASAELDHKACYLCHSLLMLAGVVVSCQDITPDQWGE
Sbjct: 529 MRPSSLRQYLDSVPLPPCQEQQPKASAELDHKACYLCHSLLMLAGVVVSCQDITPDQWGE 588

Query: 61  LQLLCMQLDRHISTQIRESPQAMHRTMLKDLATQTYIRWQELLTHCQPQAQYFSPWKDI 119
           LQLLCMQLDRHISTQIRESPQAMHRTMLKDLATQTYIRWQELLTHCQPQAQYFSPWKDI
Sbjct: 589 LQLLCMQLDRHISTQIRESPQAMHRTMLKDLATQTYIRWQELLTHCQPQAQYFSPWKDI 647


>gi|150456436 hypothetical protein LOC55719 isoform 1 [Homo sapiens]
          Length = 1173

 Score = 62.4 bits (150), Expect = 8e-11
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 28   ELDHKACYLCHSLLMLAGVVVSCQDITPDQWGELQLLCMQLDRHISTQIRESPQAMHRTM 87
            EL+ +A YL + LL L G V      +  Q     LLC  L++H+   IRE  +  +RT 
Sbjct: 1080 ELEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFVLLCGALEKHVKCDIREDARLFYRTK 1139

Query: 88   LKDLATQTYIRWQELLTHCQP-QAQYFSPW 116
            +KDL  + + +WQE++ +C+P Q Q    W
Sbjct: 1140 VKDLVARIHGKWQEIIQNCRPTQGQLHDFW 1169


>gi|209915547 hypothetical protein LOC55719 isoform 2 [Homo sapiens]
          Length = 1186

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 29/81 (35%), Positives = 46/81 (56%)

Query: 28   ELDHKACYLCHSLLMLAGVVVSCQDITPDQWGELQLLCMQLDRHISTQIRESPQAMHRTM 87
            EL+ +A YL + LL L G V      +  Q     LLC  L++H+   IRE  +  +RT 
Sbjct: 1080 ELEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFVLLCGALEKHVKCDIREDARLFYRTK 1139

Query: 88   LKDLATQTYIRWQELLTHCQP 108
            +KDL  + + +WQE++ +C+P
Sbjct: 1140 VKDLVARIHGKWQEIIQNCRP 1160


>gi|20336305 B-cell CLL/lymphoma 11A isoform 1 [Homo sapiens]
          Length = 835

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 2   RPSSLRQYLDSVPLPPCQEQQPKASAELDHKACYLC-HSLLMLAGVVVSCQDITPDQWGE 60
           +P S   +L + PLPP Q   P +   +  K+C  C  +    + +VV  +  T ++  +
Sbjct: 347 QPGSKPPFLATPPLPPLQSAPPPSQPPVKSKSCEFCGKTFKFQSNLVVHRRSHTGEKPYK 406

Query: 61  LQL---LCMQ---LDRHISTQIRES 79
             L    C Q   L RH+ T + +S
Sbjct: 407 CNLCDHACTQASKLKRHMKTHMHKS 431


>gi|20336307 B-cell CLL/lymphoma 11A isoform 2 [Homo sapiens]
          Length = 773

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 2   RPSSLRQYLDSVPLPPCQEQQPKASAELDHKACYLC-HSLLMLAGVVVSCQDITPDQWGE 60
           +P S   +L + PLPP Q   P +   +  K+C  C  +    + +VV  +  T ++  +
Sbjct: 347 QPGSKPPFLATPPLPPLQSAPPPSQPPVKSKSCEFCGKTFKFQSNLVVHRRSHTGEKPYK 406

Query: 61  LQL---LCMQ---LDRHISTQIRES 79
             L    C Q   L RH+ T + +S
Sbjct: 407 CNLCDHACTQASKLKRHMKTHMHKS 431


>gi|23943872 small ArfGAP2 [Homo sapiens]
          Length = 429

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 18  CQEQQPK-ASAELDHKACYLCHSLLMLAGVVVS-CQDITPDQWGELQLLCMQ-LDRHIST 74
           CQ + P+ AS  +    C  C  +    GV +S  + +  DQW + Q+ CMQ +    + 
Sbjct: 31  CQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKAN 90

Query: 75  QIRES--PQAMHRTMLKDLATQTYIR 98
           ++ E+  P+   R  + D A + +IR
Sbjct: 91  RLYEAYLPETFRRPQI-DPAVEGFIR 115


>gi|4505725 peroxin1 [Homo sapiens]
          Length = 1283

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 47  VVSCQDI-----TPDQWGELQLLCMQLDRHISTQIR 77
           VVSCQ +     + D W  L+L  + L++H+  QIR
Sbjct: 100 VVSCQQVEVEPLSADDWEILELHAVSLEQHLLDQIR 135


>gi|165932385 hypothetical protein LOC388341 isoform 1 [Homo
           sapiens]
          Length = 344

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 36  LCHSLLMLAGVVVSCQDITPDQWGELQLLCMQLDRHISTQ---------IRESPQAMHRT 86
           + H L++     + C     D  G ++ LC QL  H+S           ++  PQA  + 
Sbjct: 108 ITHDLIISLARYIHCPKPEGDALGAMEKLCRQLTYHLSPHSQWRRHRGLVKRKPQACLKA 167

Query: 87  ML 88
           +L
Sbjct: 168 VL 169


>gi|45505178 cancer antigen 1 [Homo sapiens]
          Length = 641

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 17  PCQEQQPKASAELDHKACYLCHSLLMLAGVVVSCQDI 53
           PC+E+   A  +   +     HSLL L   +++CQDI
Sbjct: 461 PCEERLNPADIKRASQLASKMHSLLALMVGLLTCQDI 497


>gi|140972063 protein phosphatase 1, regulatory subunit 9B [Homo
           sapiens]
          Length = 817

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 58  WGELQLLCMQLDRHISTQIRESPQAMHRTMLK 89
           WGE Q LC  +D H+  + +   QA+ R   K
Sbjct: 727 WGEAQSLCQAVDEHL-RETQAQYQALERKYSK 757


>gi|110347429 mediator complex subunit 12 [Homo sapiens]
          Length = 2177

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 1    MRPSSLRQYLDSVPLPPCQEQQP 23
            +RP     YL+ +PLPP  E+ P
Sbjct: 1730 LRPRPRAYYLEPLPLPPEDEEPP 1752


>gi|113204622 stromal membrane-associated GTPase-activating
          protein 1 isoform A [Homo sapiens]
          Length = 467

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 4  SSLRQYLDSVPLPPCQEQQPK-ASAELDHKACYLCHSLLMLAGVVVS-CQDITPDQWGEL 61
          S L +  D+     C+ + P+ AS  +    C  C  +    GV +S  + +  DQW   
Sbjct: 22 SKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAE 81

Query: 62 QLLCMQ 67
          Q+ CMQ
Sbjct: 82 QIQCMQ 87


>gi|21264558 stromal membrane-associated GTPase-activating protein
          1 isoform B [Homo sapiens]
          Length = 440

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 4  SSLRQYLDSVPLPPCQEQQPK-ASAELDHKACYLCHSLLMLAGVVVS-CQDITPDQWGEL 61
          S L +  D+     C+ + P+ AS  +    C  C  +    GV +S  + +  DQW   
Sbjct: 22 SKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAE 81

Query: 62 QLLCMQ 67
          Q+ CMQ
Sbjct: 82 QIQCMQ 87


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.133    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,180,491
Number of Sequences: 37866
Number of extensions: 202232
Number of successful extensions: 582
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 14
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.