Search of human proteins with 31563356

Search of human proteins with 31563356

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|31563356 mitochondrial ribosomal protein L55 isoform a [Homo
sapiens]
         (128 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|31563352 mitochondrial ribosomal protein L55 isoform a [Homo ...   254   2e-68
gi|31563366 mitochondrial ribosomal protein L55 isoform a [Homo ...   254   2e-68
gi|31563364 mitochondrial ribosomal protein L55 isoform a [Homo ...   254   2e-68
gi|31563358 mitochondrial ribosomal protein L55 isoform a [Homo ...   254   2e-68
gi|31563356 mitochondrial ribosomal protein L55 isoform a [Homo ...   254   2e-68
gi|31563354 mitochondrial ribosomal protein L55 isoform a [Homo ...   254   2e-68
gi|31563362 mitochondrial ribosomal protein L55 isoform a [Homo ...   254   2e-68
gi|169646394 mitochondrial ribosomal protein L55 isoform b [Homo...   239   3e-64
gi|226958575 RAS protein activator like 2 isoform 2 [Homo sapiens]     35   0.016
gi|4758808 RAS protein activator like 2 isoform 1 [Homo sapiens]       35   0.016
gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]        34   0.027
gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens]        34   0.027
gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens]     32   0.10 
gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens]      32   0.10 
gi|44662828 S-phase 2 protein isoform 4 [Homo sapiens]                 29   1.1  
gi|44662830 S-phase 2 protein isoform 1 [Homo sapiens]                 29   1.1  
gi|44662826 S-phase 2 protein isoform 3 [Homo sapiens]                 29   1.1  
gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithora...    28   1.5  
gi|48255931 hepatoma-derived growth factor-related protein 2 iso...    28   1.5  
gi|14249158 hepatoma-derived growth factor-related protein 2 iso...    28   1.5  
gi|217272804 hyaluronan-mediated motility receptor isoform d [Ho...    28   2.0  
gi|217272802 hyaluronan-mediated motility receptor isoform a [Ho...    28   2.0  
gi|217416398 hyaluronan-mediated motility receptor isoform c [Ho...    28   2.0  
gi|217416394 hyaluronan-mediated motility receptor isoform b [Ho...    28   2.0  
gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]        28   2.0  
gi|21493031 A-kinase anchor protein 13 isoform 3 [Homo sapiens]        28   2.0  
gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens]        28   2.0  
gi|210032580 SET domain containing 1B [Homo sapiens]                   28   2.0  
gi|42476028 ATPase family, AAA domain containing 3A [Homo sapiens]     28   2.0  
gi|55956801 SWI/SNF related, matrix associated, actin dependent ...    28   2.6  

>gi|31563352 mitochondrial ribosomal protein L55 isoform a [Homo
           sapiens]
          Length = 128

 Score =  254 bits (648), Expect = 2e-68
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD 60
           MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD
Sbjct: 1   MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD 60

Query: 61  GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR 120
           GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR
Sbjct: 61  GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR 120

Query: 121 QFWTRTKK 128
           QFWTRTKK
Sbjct: 121 QFWTRTKK 128


>gi|31563366 mitochondrial ribosomal protein L55 isoform a [Homo
           sapiens]
          Length = 128

 Score =  254 bits (648), Expect = 2e-68
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD 60
           MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD
Sbjct: 1   MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD 60

Query: 61  GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR 120
           GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR
Sbjct: 61  GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR 120

Query: 121 QFWTRTKK 128
           QFWTRTKK
Sbjct: 121 QFWTRTKK 128


>gi|31563364 mitochondrial ribosomal protein L55 isoform a [Homo
           sapiens]
          Length = 128

 Score =  254 bits (648), Expect = 2e-68
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD 60
           MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD
Sbjct: 1   MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD 60

Query: 61  GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR 120
           GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR
Sbjct: 61  GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR 120

Query: 121 QFWTRTKK 128
           QFWTRTKK
Sbjct: 121 QFWTRTKK 128


>gi|31563358 mitochondrial ribosomal protein L55 isoform a [Homo
           sapiens]
          Length = 128

 Score =  254 bits (648), Expect = 2e-68
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD 60
           MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD
Sbjct: 1   MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD 60

Query: 61  GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR 120
           GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR
Sbjct: 61  GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR 120

Query: 121 QFWTRTKK 128
           QFWTRTKK
Sbjct: 121 QFWTRTKK 128


>gi|31563356 mitochondrial ribosomal protein L55 isoform a [Homo
           sapiens]
          Length = 128

 Score =  254 bits (648), Expect = 2e-68
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD 60
           MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD
Sbjct: 1   MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD 60

Query: 61  GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR 120
           GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR
Sbjct: 61  GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR 120

Query: 121 QFWTRTKK 128
           QFWTRTKK
Sbjct: 121 QFWTRTKK 128


>gi|31563354 mitochondrial ribosomal protein L55 isoform a [Homo
           sapiens]
          Length = 128

 Score =  254 bits (648), Expect = 2e-68
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD 60
           MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD
Sbjct: 1   MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD 60

Query: 61  GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR 120
           GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR
Sbjct: 61  GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR 120

Query: 121 QFWTRTKK 128
           QFWTRTKK
Sbjct: 121 QFWTRTKK 128


>gi|31563362 mitochondrial ribosomal protein L55 isoform a [Homo
           sapiens]
          Length = 128

 Score =  254 bits (648), Expect = 2e-68
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD 60
           MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD
Sbjct: 1   MAAVGSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQD 60

Query: 61  GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR 120
           GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR
Sbjct: 61  GSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYR 120

Query: 121 QFWTRTKK 128
           QFWTRTKK
Sbjct: 121 QFWTRTKK 128


>gi|169646394 mitochondrial ribosomal protein L55 isoform b [Homo
           sapiens]
          Length = 164

 Score =  239 bits (611), Expect = 3e-64
 Identities = 121/124 (97%), Positives = 121/124 (97%)

Query: 5   GSLLGRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQDGSTI 64
           G  L RLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQDGSTI
Sbjct: 41  GHQLCRLRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQDGSTI 100

Query: 65  HIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYRQFWT 124
           HIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYRQFWT
Sbjct: 101 HIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYRQFWT 160

Query: 125 RTKK 128
           RTKK
Sbjct: 161 RTKK 164


>gi|226958575 RAS protein activator like 2 isoform 2 [Homo sapiens]
          Length = 1280

 Score = 35.0 bits (79), Expect = 0.016
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 69   REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSR-KEYEQELSDDLHVERYRQFWTRTK 127
            R+  + +  P+D  T+SP ER A       Q +   +E EQ L +  H E+Y Q  T+ K
Sbjct: 1079 RQQTQQVQSPVDSATMSPVERTAAWVLNNGQYEEDVEETEQNLDEAKHAEKYEQEITKLK 1138

Query: 128  K 128
            +
Sbjct: 1139 E 1139


>gi|4758808 RAS protein activator like 2 isoform 1 [Homo sapiens]
          Length = 1139

 Score = 35.0 bits (79), Expect = 0.016
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 69  REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSR-KEYEQELSDDLHVERYRQFWTRTK 127
           R+  + +  P+D  T+SP ER A       Q +   +E EQ L +  H E+Y Q  T+ K
Sbjct: 938 RQQTQQVQSPVDSATMSPVERTAAWVLNNGQYEEDVEETEQNLDEAKHAEKYEQEITKLK 997

Query: 128 K 128
           +
Sbjct: 998 E 998


>gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]
          Length = 758

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 24/84 (28%), Positives = 35/84 (41%)

Query: 22  ALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDL 81
           A RR    SW   SS +S     R    R     L +Q      +R RE R+     +  
Sbjct: 100 ARRRRRARSWSPSSSASSSASPGRSQSPRAAAAALSQQQSLQERLRLREERKQQEELMKA 159

Query: 82  DTLSPEERRARLRKREAQLQSRKE 105
                E+R  RL K+EA+ + ++E
Sbjct: 160 FETPEEKRARRLAKKEAKERKKRE 183


>gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens]
          Length = 758

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 24/84 (28%), Positives = 35/84 (41%)

Query: 22  ALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDL 81
           A RR    SW   SS +S     R    R     L +Q      +R RE R+     +  
Sbjct: 100 ARRRRRARSWSPSSSASSSASPGRSQSPRAAAAALSQQQSLQERLRLREERKQQEELMKA 159

Query: 82  DTLSPEERRARLRKREAQLQSRKE 105
                E+R  RL K+EA+ + ++E
Sbjct: 160 FETPEEKRARRLAKKEAKERKKRE 183


>gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens]
          Length = 1113

 Score = 32.3 bits (72), Expect = 0.10
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 21  PALRRLHTSSWR--ADSSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMP 78
           P+   LH S  R   + S +SL  +H +  + L    L + D      R RE  R     
Sbjct: 190 PSAMHLHLSGVRYPPELSHSSLAALHSERMSGLSAERL-QMDEELRRERERERERERERE 248

Query: 79  IDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYRQFWTRTKK 128
            D      E  + R R+RE + +  KE E+E   +  +ER R+   R K+
Sbjct: 249 ADR-----EREKEREREREKEREQEKEREREKERERELERQREQRAREKE 293


>gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens]
          Length = 1217

 Score = 32.3 bits (72), Expect = 0.10
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 21  PALRRLHTSSWR--ADSSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMP 78
           P+   LH S  R   + S +SL  +H +  + L    L + D      R RE  R     
Sbjct: 294 PSAMHLHLSGVRYPPELSHSSLAALHSERMSGLSAERL-QMDEELRRERERERERERERE 352

Query: 79  IDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYRQFWTRTKK 128
            D      E  + R R+RE + +  KE E+E   +  +ER R+   R K+
Sbjct: 353 ADR-----EREKEREREREKEREQEKEREREKERERELERQREQRAREKE 397


>gi|44662828 S-phase 2 protein isoform 4 [Homo sapiens]
          Length = 316

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 69  REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117
           RE R  L +P      S E+++A LR R  Q  S   YE +  DDL  E
Sbjct: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308


>gi|44662830 S-phase 2 protein isoform 1 [Homo sapiens]
          Length = 316

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 69  REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117
           RE R  L +P      S E+++A LR R  Q  S   YE +  DDL  E
Sbjct: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308


>gi|44662826 S-phase 2 protein isoform 3 [Homo sapiens]
          Length = 316

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 69  REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117
           RE R  L +P      S E+++A LR R  Q  S   YE +  DDL  E
Sbjct: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308


>gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithorax
            homolog, Drosophila); translocated to, 4 isoform 1 [Homo
            sapiens]
          Length = 1834

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 17/66 (25%)

Query: 70   EPRRMLAMPID--LDTLSPEERRAR-----LRKREAQLQSRKEYEQELSDDLHVERYRQF 122
            E R   AMP    LD L  EERR +     +RKREA+ ++R+E E          R RQ 
Sbjct: 1599 ERRARTAMPAISVLDLLQDEERRRQQQLEEMRKREAEDRARQEEE----------RRRQE 1648

Query: 123  WTRTKK 128
              RTK+
Sbjct: 1649 EERTKR 1654


>gi|48255931 hepatoma-derived growth factor-related protein 2
           isoform 1 [Homo sapiens]
          Length = 671

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 80  DLDTLSPEERRARLRKREAQLQSRKEYEQEL 110
           ++D +S  +RR   R+RE + + R+E E+EL
Sbjct: 309 EVDRISEWKRRDEARRRELEARRRREQEEEL 339


>gi|14249158 hepatoma-derived growth factor-related protein 2
           isoform 2 [Homo sapiens]
          Length = 670

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 80  DLDTLSPEERRARLRKREAQLQSRKEYEQEL 110
           ++D +S  +RR   R+RE + + R+E E+EL
Sbjct: 309 EVDRISEWKRRDEARRRELEARRRREQEEEL 339


>gi|217272804 hyaluronan-mediated motility receptor isoform d [Homo
           sapiens]
          Length = 638

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)

Query: 87  EERRARLRKREAQLQSRKEYEQELSDDLH 115
           ++ R +L+++E Q+ S  + E+ELS  LH
Sbjct: 243 QQEREKLQQKELQIDSLLQQEKELSSSLH 271


>gi|217272802 hyaluronan-mediated motility receptor isoform a [Homo
           sapiens]
          Length = 725

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)

Query: 87  EERRARLRKREAQLQSRKEYEQELSDDLH 115
           ++ R +L+++E Q+ S  + E+ELS  LH
Sbjct: 330 QQEREKLQQKELQIDSLLQQEKELSSSLH 358


>gi|217416398 hyaluronan-mediated motility receptor isoform c [Homo
           sapiens]
          Length = 709

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)

Query: 87  EERRARLRKREAQLQSRKEYEQELSDDLH 115
           ++ R +L+++E Q+ S  + E+ELS  LH
Sbjct: 314 QQEREKLQQKELQIDSLLQQEKELSSSLH 342


>gi|217416394 hyaluronan-mediated motility receptor isoform b [Homo
           sapiens]
          Length = 724

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)

Query: 87  EERRARLRKREAQLQSRKEYEQELSDDLH 115
           ++ R +L+++E Q+ S  + E+ELS  LH
Sbjct: 329 QQEREKLQQKELQIDSLLQQEKELSSSLH 357


>gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]
          Length = 2817

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 87   EERRARLRKREAQLQSRKEYEQELSDDLHVER 118
            E R   LR+REA L  R+E  Q+   DL  ER
Sbjct: 2610 EARERELREREALLAQREEEVQQGQQDLEKER 2641


>gi|21493031 A-kinase anchor protein 13 isoform 3 [Homo sapiens]
          Length = 1058

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 87  EERRARLRKREAQLQSRKEYEQELSDDLHVER 118
           E R   LR+REA L  R+E  Q+   DL  ER
Sbjct: 851 EARERELREREALLAQREEEVQQGQQDLEKER 882


>gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens]
          Length = 2813

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 87   EERRARLRKREAQLQSRKEYEQELSDDLHVER 118
            E R   LR+REA L  R+E  Q+   DL  ER
Sbjct: 2606 EARERELREREALLAQREEEVQQGQQDLEKER 2637


>gi|210032580 SET domain containing 1B [Homo sapiens]
          Length = 1923

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 53   PVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSD 112
            P  L K+D   + +R R  R     P++LD+   E+ +  L + +   +  +E E+E  +
Sbjct: 1006 PCELAKRDPKGVGVRRRPAR-----PLELDSGGEEDEKESLSEEQESTEEEEEAEEEEEE 1060

Query: 113  D 113
            +
Sbjct: 1061 E 1061


>gi|42476028 ATPase family, AAA domain containing 3A [Homo sapiens]
          Length = 634

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 3/110 (2%)

Query: 12  RQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREP 71
           +QS +K    AL  LHT  W     RA   +   +      P  +   +   +       
Sbjct: 89  QQSKLKMRLEALSLLHTLVWAWSLCRAGAVQTQERLSGSASPEQVPAGECCALQEYEAAV 148

Query: 72  RRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVERYRQ 121
            ++ +  I       EERR  L +   Q Q+R +Y+ +L+   + ++ +Q
Sbjct: 149 EQLKSEQIRAQA---EERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQ 195


>gi|55956801 SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily b, member 1 isoform b
           [Homo sapiens]
          Length = 376

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 11  LRQSTVKATGPALRRLHTSSWRADSSRASLTRVHRQAYAR----LYPVLLVKQDGSTIHI 66
           LR+   K     +  L  SS   D+   S T ++R    R     +P+     D + IH 
Sbjct: 111 LREQKAKRNSQWVPTLPNSSHHLDAVPCSTT-INRNRMGRDKKRTFPLCFDDHDPAVIHE 169

Query: 67  RYREPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDL 114
              +P  ++ + +D++    + R A       +L + + + + L DDL
Sbjct: 170 NASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDL 217


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,373,315
Number of Sequences: 37866
Number of extensions: 159683
Number of successful extensions: 1182
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 166
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.