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Search of human proteins with 31542675
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31542675 Atg13-interacting protein [Homo sapiens]
(218 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|149158714 Atg13-interacting protein [Homo sapiens] 440 e-124
gi|31542675 Atg13-interacting protein [Homo sapiens] 440 e-124
gi|227116277 solute carrier family 28 (sodium-coupled nucleoside... 30 1.2
gi|125490354 spermatogenesis associated 1 [Homo sapiens] 30 1.6
gi|169208753 PREDICTED: similar to WHDC1-like protein 1 [Homo sa... 30 2.1
gi|239745156 PREDICTED: similar to WAS protein homolog associate... 30 2.1
gi|11067747 CDC5-like [Homo sapiens] 30 2.1
gi|5174529 methionine adenosyltransferase II, alpha [Homo sapiens] 29 2.7
gi|122937271 WAS protein homolog associated with actin, golgi me... 29 3.5
gi|46255045 holocarboxylase synthetase [Homo sapiens] 28 6.0
gi|106507301 DNA-directed DNA polymerase alpha 1 [Homo sapiens] 28 6.0
gi|207029299 NIMA-related kinase 10 isoform 3 [Homo sapiens] 28 6.0
gi|169208040 PREDICTED: similar to WAS protein homolog associate... 28 7.9
gi|239745125 PREDICTED: similar to WAS protein homolog associate... 28 7.9
gi|16904383 leucine rich repeat containing 7 [Homo sapiens] 28 7.9
>gi|149158714 Atg13-interacting protein [Homo sapiens]
Length = 218
Score = 440 bits (1132), Expect = e-124
Identities = 218/218 (100%), Positives = 218/218 (100%)
Query: 1 MNCRSEVLEVSVEGRQVEEAMLAVLHTVLLHRSTGKFHYKKEGTYSIGTVGTQDVDCDFI 60
MNCRSEVLEVSVEGRQVEEAMLAVLHTVLLHRSTGKFHYKKEGTYSIGTVGTQDVDCDFI
Sbjct: 1 MNCRSEVLEVSVEGRQVEEAMLAVLHTVLLHRSTGKFHYKKEGTYSIGTVGTQDVDCDFI 60
Query: 61 DFTYVRVSSEELDRALRKVVGEFKDALRNSGGDGLGQMSLEFYQKKKSRWPFSDECIPWE 120
DFTYVRVSSEELDRALRKVVGEFKDALRNSGGDGLGQMSLEFYQKKKSRWPFSDECIPWE
Sbjct: 61 DFTYVRVSSEELDRALRKVVGEFKDALRNSGGDGLGQMSLEFYQKKKSRWPFSDECIPWE 120
Query: 121 VWTVKVHVVALATEQERQICREKVGEKLCEKIINIVEVMNRHEYLPKMPTQSEVDNVFDT 180
VWTVKVHVVALATEQERQICREKVGEKLCEKIINIVEVMNRHEYLPKMPTQSEVDNVFDT
Sbjct: 121 VWTVKVHVVALATEQERQICREKVGEKLCEKIINIVEVMNRHEYLPKMPTQSEVDNVFDT 180
Query: 181 GLRDVQPYLYKISFQITDALGTSVTTTMRRLIKDTLAL 218
GLRDVQPYLYKISFQITDALGTSVTTTMRRLIKDTLAL
Sbjct: 181 GLRDVQPYLYKISFQITDALGTSVTTTMRRLIKDTLAL 218
>gi|31542675 Atg13-interacting protein [Homo sapiens]
Length = 218
Score = 440 bits (1132), Expect = e-124
Identities = 218/218 (100%), Positives = 218/218 (100%)
Query: 1 MNCRSEVLEVSVEGRQVEEAMLAVLHTVLLHRSTGKFHYKKEGTYSIGTVGTQDVDCDFI 60
MNCRSEVLEVSVEGRQVEEAMLAVLHTVLLHRSTGKFHYKKEGTYSIGTVGTQDVDCDFI
Sbjct: 1 MNCRSEVLEVSVEGRQVEEAMLAVLHTVLLHRSTGKFHYKKEGTYSIGTVGTQDVDCDFI 60
Query: 61 DFTYVRVSSEELDRALRKVVGEFKDALRNSGGDGLGQMSLEFYQKKKSRWPFSDECIPWE 120
DFTYVRVSSEELDRALRKVVGEFKDALRNSGGDGLGQMSLEFYQKKKSRWPFSDECIPWE
Sbjct: 61 DFTYVRVSSEELDRALRKVVGEFKDALRNSGGDGLGQMSLEFYQKKKSRWPFSDECIPWE 120
Query: 121 VWTVKVHVVALATEQERQICREKVGEKLCEKIINIVEVMNRHEYLPKMPTQSEVDNVFDT 180
VWTVKVHVVALATEQERQICREKVGEKLCEKIINIVEVMNRHEYLPKMPTQSEVDNVFDT
Sbjct: 121 VWTVKVHVVALATEQERQICREKVGEKLCEKIINIVEVMNRHEYLPKMPTQSEVDNVFDT 180
Query: 181 GLRDVQPYLYKISFQITDALGTSVTTTMRRLIKDTLAL 218
GLRDVQPYLYKISFQITDALGTSVTTTMRRLIKDTLAL
Sbjct: 181 GLRDVQPYLYKISFQITDALGTSVTTTMRRLIKDTLAL 218
>gi|227116277 solute carrier family 28 (sodium-coupled nucleoside
transporter), member 2 [Homo sapiens]
Length = 658
Score = 30.4 bits (67), Expect = 1.2
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 51 GTQDVDCDFIDFTYVRVSSEELDRALRKVVGEFKDALRNSGGDGLGQMSLEFYQKKKSRW 110
G Q + ++ V E +++ + + DA +S GDGLG + + ++SRW
Sbjct: 6 GRQSIALSTVETGTVNPGLELMEKEVEPEGSKRTDAQGHSLGDGLGPSTYQ----RRSRW 61
Query: 111 PFS 113
PFS
Sbjct: 62 PFS 64
>gi|125490354 spermatogenesis associated 1 [Homo sapiens]
Length = 459
Score = 30.0 bits (66), Expect = 1.6
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 39 YKKEGT--YSIGTVGTQDVDCDFIDFTYVRVSSEELDRALRKVVGEF 83
Y EG+ Y + T+ T+ V+ FI ++RVS + RALR+ +GEF
Sbjct: 42 YVPEGSWNYKLNTISTEVVN-KFISAGFLRVSPQLTLRALRERLGEF 87
>gi|169208753 PREDICTED: similar to WHDC1-like protein 1 [Homo
sapiens]
Length = 130
Score = 29.6 bits (65), Expect = 2.1
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 157 EVMNRHEYLPKMPTQSEVDNVFDTGLRDVQPYLYKISFQI---TDALGTSVTTTMRRLIK 213
E+ + E LP+ V + + ++Q LY++ F+I + L T+ +++RLIK
Sbjct: 68 EIQGKMEDLPEQEKNINVVDELEMQFYEIQLELYEVKFEILKNEEILLTTQLDSLKRLIK 127
Query: 214 DTL 216
D +
Sbjct: 128 DEI 130
>gi|239745156 PREDICTED: similar to WAS protein homolog associated
with actin, golgi membranes and microtubules isoform 2
[Homo sapiens]
Length = 130
Score = 29.6 bits (65), Expect = 2.1
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 157 EVMNRHEYLPKMPTQSEVDNVFDTGLRDVQPYLYKISFQI---TDALGTSVTTTMRRLIK 213
E+ + E LP+ V + + ++Q LY++ F+I + L T+ +++RLIK
Sbjct: 68 EIQGKMEDLPEQEKNINVVDELEMQFYEIQLELYEVKFEILKNEEILLTTQLDSLKRLIK 127
Query: 214 DTL 216
D +
Sbjct: 128 DEI 130
>gi|11067747 CDC5-like [Homo sapiens]
Length = 802
Score = 29.6 bits (65), Expect = 2.1
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 1 MNCRSEVLEVSVEGRQVEEAMLAVLHTVLLHRSTGKFHYKKEGTYSIGTVGTQDVDCDFI 60
+N + ++ +++ M+ +LH LLH KK T GT ++ + ++
Sbjct: 559 LNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKTVGFGTNNSEHI--TYL 616
Query: 61 DFT-YVRVSSEELDRALRKVVGEFKDALRNSGGDGLGQMSLEFYQK 105
+ Y + S EEL +A +V E + + G G++S E Y +
Sbjct: 617 EHNPYEKFSKEELKKAQDVLVQEMEVVKQ---GMSHGELSSEAYNQ 659
>gi|5174529 methionine adenosyltransferase II, alpha [Homo sapiens]
Length = 395
Score = 29.3 bits (64), Expect = 2.7
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 121 VWTVKVHVVALATEQERQICREKVGEKLCEKIINIV 156
V ++VH + ++ + + ++C +++ + L EK+I V
Sbjct: 195 VLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAV 230
>gi|122937271 WAS protein homolog associated with actin, golgi
membranes and microtubules [Homo sapiens]
Length = 809
Score = 28.9 bits (63), Expect = 3.5
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 157 EVMNRHEYLPKMPTQSEVDNVFDTGLRDVQPYLYKISFQI---TDALGTSVTTTMRRLIK 213
E+ + E LP+ + V + + ++Q LY++ F+I + L T+ +++RLIK
Sbjct: 364 EIQGKMEDLPEQEKNTNVVDELEIQFYEIQLELYEVKFEILKNEEILLTTQLDSLKRLIK 423
Query: 214 D 214
+
Sbjct: 424 E 424
>gi|46255045 holocarboxylase synthetase [Homo sapiens]
Length = 726
Score = 28.1 bits (61), Expect = 6.0
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 64 YVRVSSEELDRALRKVVGEFKDALRNSGGDGLGQMSLEFYQKKKSRWPFSDECIPWEVWT 123
Y+ ++EE+ L + +G+ D+ G GQ+SL F S + CIP
Sbjct: 387 YLLSAAEEIRDPLMQWLGKHVDS---EGEIKSGQLSLRFVSSYVSEVEITPSCIP----- 438
Query: 124 VKVHVVALATEQ-ERQICREKVGEKLCEKIINIVEV 158
V ++ A ++E +I R+ + K K+I EV
Sbjct: 439 VVTNMEAFSSEHFNLEIYRQNLQTKQLGKVILFAEV 474
>gi|106507301 DNA-directed DNA polymerase alpha 1 [Homo sapiens]
Length = 1462
Score = 28.1 bits (61), Expect = 6.0
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 166 PKMPTQSEVDNVFDTGLRDVQPYLYKIS--------FQITDALGTSVTTTMRRLIK 213
P T++ DNVFD D++P LY+ S T L + +RR IK
Sbjct: 1284 PTCGTENIYDNVFDGSGTDMEPSLYRCSNIDCKASPLTFTVQLSNKLIMDIRRFIK 1339
>gi|207029299 NIMA-related kinase 10 isoform 3 [Homo sapiens]
Length = 712
Score = 28.1 bits (61), Expect = 6.0
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 8/39 (20%)
Query: 128 VVALATEQERQICREKVGEKLCEKIINIVE--VMNRHEY 164
++ALA+ E Q CREK+ E +NIVE +M HEY
Sbjct: 230 LLALASLAESQECREKISE------LNIVENLLMILHEY 262
>gi|169208040 PREDICTED: similar to WAS protein homolog associated
with actin, golgi membranes and microtubules isoform 1
[Homo sapiens]
Length = 131
Score = 27.7 bits (60), Expect = 7.9
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 157 EVMNRHEYLPKMPTQSEVDNVFDTGLRDVQPYLYKISFQI---TDALGTSVTTTMRRLIK 213
E+ + E LP+ V + + ++Q LY++ F+I + L T+ +++RLIK
Sbjct: 52 EIQGKMEDLPEQEKNINVVDELEMQFYEIQLELYEVKFEILKNEEILLTTQLDSLKRLIK 111
Query: 214 D 214
+
Sbjct: 112 E 112
>gi|239745125 PREDICTED: similar to WAS protein homolog associated
with actin, golgi membranes and microtubules [Homo
sapiens]
Length = 130
Score = 27.7 bits (60), Expect = 7.9
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 157 EVMNRHEYLPKMPTQSEVDNVFDTGLRDVQPYLYKISFQI---TDALGTSVTTTMRRLIK 213
E+ + E LP+ V + + ++Q LY++ F+I + L T+ +++RLIK
Sbjct: 68 EIQGKMEDLPEQEKNINVVDELEMQFYEIQLELYEVKFEILKNEEILLTTQLDSLKRLIK 127
Query: 214 DTL 216
+ +
Sbjct: 128 NEI 130
>gi|16904383 leucine rich repeat containing 7 [Homo sapiens]
Length = 1537
Score = 27.7 bits (60), Expect = 7.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 162 HEYLPKMPTQSEVDNVFDTGLRDVQP 187
H+ LP T S+ N+ D G DV P
Sbjct: 1325 HQELPLQKTPSQQSNILDNGQEDVSP 1350
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,466,856
Number of Sequences: 37866
Number of extensions: 308778
Number of successful extensions: 658
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 15
length of query: 218
length of database: 18,247,518
effective HSP length: 98
effective length of query: 120
effective length of database: 14,536,650
effective search space: 1744398000
effective search space used: 1744398000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.