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Search of human proteins with 31542319
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31542319 epsilon subunit of coatomer protein complex isoform
a [Homo sapiens]
(308 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31542319 epsilon subunit of coatomer protein complex isoform ... 611 e-175
gi|40805825 epsilon subunit of coatomer protein complex isoform ... 486 e-137
gi|40805827 epsilon subunit of coatomer protein complex isoform ... 481 e-136
gi|5803167 splicing factor 3a, subunit 3 [Homo sapiens] 30 3.5
gi|89111119 metallothionein-like 5, testis-specific isoform b [H... 29 4.6
gi|40806200 metallothionein-like 5, testis-specific isoform a [H... 29 4.6
gi|20665034 tenascin XB isoform 2 [Homo sapiens] 29 6.0
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens] 29 6.0
gi|83415184 transmembrane and tetratricopeptide repeat containin... 29 6.0
gi|38198663 potassium channel tetramerisation domain containing ... 28 7.9
>gi|31542319 epsilon subunit of coatomer protein complex isoform a
[Homo sapiens]
Length = 308
Score = 611 bits (1575), Expect = e-175
Identities = 308/308 (100%), Positives = 308/308 (100%)
Query: 1 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY 60
MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
Sbjct: 1 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY 60
Query: 61 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL 120
LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
Sbjct: 61 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL 120
Query: 121 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT 180
LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT
Sbjct: 121 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT 180
Query: 181 LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ 240
LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ
Sbjct: 181 LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ 240
Query: 241 EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL 300
EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL
Sbjct: 241 EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL 300
Query: 301 VLQYAPSA 308
VLQYAPSA
Sbjct: 301 VLQYAPSA 308
>gi|40805825 epsilon subunit of coatomer protein complex isoform b
[Homo sapiens]
Length = 257
Score = 486 bits (1251), Expect = e-137
Identities = 256/308 (83%), Positives = 256/308 (83%), Gaps = 51/308 (16%)
Query: 1 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY 60
MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
Sbjct: 1 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY 60
Query: 61 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL 120
LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESR
Sbjct: 61 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRS----------------------- 97
Query: 121 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT 180
TAMTVQILLKLDRLDLARKELKRMQDLDEDAT
Sbjct: 98 ----------------------------TAMTVQILLKLDRLDLARKELKRMQDLDEDAT 129
Query: 181 LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ 240
LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ
Sbjct: 130 LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ 189
Query: 241 EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL 300
EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL
Sbjct: 190 EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL 249
Query: 301 VLQYAPSA 308
VLQYAPSA
Sbjct: 250 VLQYAPSA 257
>gi|40805827 epsilon subunit of coatomer protein complex isoform c
[Homo sapiens]
Length = 256
Score = 481 bits (1237), Expect = e-136
Identities = 256/308 (83%), Positives = 256/308 (83%), Gaps = 52/308 (16%)
Query: 1 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY 60
MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
Sbjct: 1 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY 60
Query: 61 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL 120
LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
Sbjct: 61 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL 120
Query: 121 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT 180
LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT
Sbjct: 121 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT 180
Query: 181 LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ 240
LTQLATAWVSLAT
Sbjct: 181 LTQLATAWVSLAT----------------------------------------------- 193
Query: 241 EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL 300
DSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL
Sbjct: 194 -----DSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL 248
Query: 301 VLQYAPSA 308
VLQYAPSA
Sbjct: 249 VLQYAPSA 256
>gi|5803167 splicing factor 3a, subunit 3 [Homo sapiens]
Length = 501
Score = 29.6 bits (65), Expect = 3.5
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 196 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVN 255
E+L D + +EM K S +N Q R+ G L++ D G + +N
Sbjct: 16 ERLMDV--MAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELN 73
Query: 256 LIVLSQHLGKPPEVTNRY--LSQLKDAHRSHP 285
I P E Y L Q+K+ HR HP
Sbjct: 74 AI------SGPNEFAEFYNRLKQIKEFHRKHP 99
>gi|89111119 metallothionein-like 5, testis-specific isoform b [Homo
sapiens]
Length = 306
Score = 29.3 bits (64), Expect = 4.6
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 24/126 (19%)
Query: 177 EDATLTQL-------ATAWVSLATGGEKLQDAYYIFQEM----ADKCSPTLLLLN----- 220
EDA +T+L A+ + L + +D +++F+E AD P L N
Sbjct: 14 EDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPKEPVLHAFNPALGA 73
Query: 221 ---GQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQL 277
GQ +A G + E L + G PE V +PP +LS L
Sbjct: 74 DCKGQVKAKLAGGDSDGGE-----LLGEYPGIPELSALEDVALLQAPQPPACNVHFLSSL 128
Query: 278 KDAHRS 283
AHRS
Sbjct: 129 LPAHRS 134
>gi|40806200 metallothionein-like 5, testis-specific isoform a [Homo
sapiens]
Length = 508
Score = 29.3 bits (64), Expect = 4.6
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 24/126 (19%)
Query: 177 EDATLTQL-------ATAWVSLATGGEKLQDAYYIFQEM----ADKCSPTLLLLN----- 220
EDA +T+L A+ + L + +D +++F+E AD P L N
Sbjct: 14 EDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPKEPVLHAFNPALGA 73
Query: 221 ---GQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQL 277
GQ +A G + E L + G PE V +PP +LS L
Sbjct: 74 DCKGQVKAKLAGGDSDGGE-----LLGEYPGIPELSALEDVALLQAPQPPACNVHFLSSL 128
Query: 278 KDAHRS 283
AHRS
Sbjct: 129 LPAHRS 134
>gi|20665034 tenascin XB isoform 2 [Homo sapiens]
Length = 673
Score = 28.9 bits (63), Expect = 6.0
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 137 LRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGE 196
LR H+ DS++ TA T+ +L+ R DL E++ T W+ + +
Sbjct: 165 LRGPHKADSIQGTARTLSPVLESPR-DLQFSEIRE----------TSAKVNWMPPPSRAD 213
Query: 197 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG 230
+ +Y ++AD P + ++GQA QG
Sbjct: 214 SFKVSY----QLADGGEPQSVQVDGQARTQKLQG 243
>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
Length = 4242
Score = 28.9 bits (63), Expect = 6.0
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 137 LRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGE 196
LR H+ DS++ TA T+ +L+ R DL E++ T W+ + +
Sbjct: 3734 LRGPHKADSIQGTARTLSPVLESPR-DLQFSEIRE----------TSAKVNWMPPPSRAD 3782
Query: 197 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG 230
+ +Y ++AD P + ++GQA QG
Sbjct: 3783 SFKVSY----QLADGGEPQSVQVDGQARTQKLQG 3812
>gi|83415184 transmembrane and tetratricopeptide repeat containing 1
[Homo sapiens]
Length = 774
Score = 28.9 bits (63), Expect = 6.0
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 183 QLATAWVSLAT---GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLL 239
+ A A+ SLA+ E+ ++A I+Q C + L N + G E A
Sbjct: 472 EFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHY 531
Query: 240 QEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRS 283
Q+A+ + +VNL L + LG+ Y L+ AH++
Sbjct: 532 QQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKA 575
>gi|38198663 potassium channel tetramerisation domain containing 8
[Homo sapiens]
Length = 473
Score = 28.5 bits (62), Expect = 7.9
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Query: 3 PPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLA 62
P PG GG G + D ++ F Y+ + + + R V R + R LA
Sbjct: 187 PSGPGAHGGGGGGGAQ--DKRSGFLTLGYRGSYTTVRDNQADAKFRRVARIMVCGRIALA 244
Query: 63 QRKFGVVLDEIK-PSSAPELQAVRMFADYLAHESRRDSI 100
+ FG L+E + P PE R + + E D +
Sbjct: 245 KEVFGDTLNESRDPDRQPEKYTSRFYLKFTYLEQAFDRL 283
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,770,316
Number of Sequences: 37866
Number of extensions: 486833
Number of successful extensions: 1453
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1447
Number of HSP's gapped (non-prelim): 12
length of query: 308
length of database: 18,247,518
effective HSP length: 102
effective length of query: 206
effective length of database: 14,385,186
effective search space: 2963348316
effective search space used: 2963348316
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.