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Search of human proteins with 29824427
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29824427 dynein 2 light intermediate chain isoform 2 [Homo
sapiens]
(201 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29824427 dynein 2 light intermediate chain isoform 2 [Homo sa... 413 e-116
gi|40548413 dynein 2 light intermediate chain isoform 1 [Homo sa... 347 4e-96
gi|61102732 dynein 2 light intermediate chain isoform 3 [Homo sa... 347 4e-96
gi|166795297 dynein, cytoplasmic 1, light intermediate chain 1 [... 45 5e-05
gi|5453634 dynein, cytoplasmic, light intermediate polypeptide 2... 40 0.002
gi|239753192 PREDICTED: hypothetical protein [Homo sapiens] 31 0.81
gi|239747766 PREDICTED: hypothetical protein [Homo sapiens] 31 0.81
gi|239741632 PREDICTED: hypothetical protein XP_002342252 [Homo ... 31 0.81
gi|72534732 dehydrogenase/reductase (SDR family) member 12 isofo... 29 3.1
gi|13375997 dehydrogenase/reductase (SDR family) member 12 isofo... 29 3.1
gi|6552296 ADP-ribosylation factor-like 4C [Homo sapiens] 28 5.2
gi|149363636 plexin B2 [Homo sapiens] 28 6.9
gi|8923900 cytidine monophospho-N-acetylneuraminic acid syntheta... 27 9.0
gi|30520350 ADP-ribosylation factor-like 8 [Homo sapiens] 27 9.0
>gi|29824427 dynein 2 light intermediate chain isoform 2 [Homo
sapiens]
Length = 201
Score = 413 bits (1061), Expect = e-116
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MPSETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKP 60
MPSETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKP
Sbjct: 1 MPSETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKP 60
Query: 61 TLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKP 120
TLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKP
Sbjct: 61 TLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKP 120
Query: 121 NDLWPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKIWNNMPKDHPVSCCLGLLLES 180
NDLWPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKIWNNMPKDHPVSCCLGLLLES
Sbjct: 121 NDLWPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKIWNNMPKDHPVSCCLGLLLES 180
Query: 181 LVPFIVNDNITNNFFRFLCMT 201
LVPFIVNDNITNNFFRFLCMT
Sbjct: 181 LVPFIVNDNITNNFFRFLCMT 201
>gi|40548413 dynein 2 light intermediate chain isoform 1 [Homo
sapiens]
Length = 351
Score = 347 bits (890), Expect = 4e-96
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MPSETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKP 60
MPSETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKP
Sbjct: 1 MPSETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKP 60
Query: 61 TLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKP 120
TLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKP
Sbjct: 61 TLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKP 120
Query: 121 NDLWPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKIWNNMPKDHP 169
NDLWPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKIWNNMPKDHP
Sbjct: 121 NDLWPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKIWNNMPKDHP 169
>gi|61102732 dynein 2 light intermediate chain isoform 3 [Homo
sapiens]
Length = 334
Score = 347 bits (890), Expect = 4e-96
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MPSETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKP 60
MPSETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKP
Sbjct: 1 MPSETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKP 60
Query: 61 TLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKP 120
TLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKP
Sbjct: 61 TLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKP 120
Query: 121 NDLWPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKIWNNMPKDHP 169
NDLWPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKIWNNMPKDHP
Sbjct: 121 NDLWPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKIWNNMPKDHP 169
>gi|166795297 dynein, cytoplasmic 1, light intermediate chain 1
[Homo sapiens]
Length = 523
Score = 44.7 bits (104), Expect = 5e-05
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 4 ETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKPTLA 63
+ LW +EV R + A K V +G GKT++I R + E K
Sbjct: 46 QNLWSCILSEVSTRSRSKLP------AGKNVLLLGEDGAGKTSLI-RKIQGIEEYKKGRG 98
Query: 64 LEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKPNDL 123
LEY Y + + W L G L+ + +L+ ++LV+D+SKP
Sbjct: 99 LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLVVDMSKPWTA 158
Query: 124 WPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKI 160
+++ + HVDK+ K + + +M QK+
Sbjct: 159 LDSLQKWASVVREHVDKL-----KIPPEEMKQMEQKL 190
>gi|5453634 dynein, cytoplasmic, light intermediate polypeptide 2
[Homo sapiens]
Length = 492
Score = 39.7 bits (91), Expect = 0.002
Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 13/141 (9%)
Query: 4 ETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKPTLA 63
++LW +EV R + K + G GKTT++ + L E K
Sbjct: 33 QSLWSSILSEVSTRARSKLPSG------KNILVFGEDGSGKTTLMTK-LQGAEHGKKGRG 85
Query: 64 LEYTYGRRAKGHNTPKDI---AHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKP 120
LEY Y H+ +D + W L G L+ ++ ++L ++ V D+S+P
Sbjct: 86 LEYLY---LSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRP 142
Query: 121 NDLWPTMENLLQATKSHVDKV 141
+ +++ + H+DK+
Sbjct: 143 WTVMESLQKWASVLREHIDKM 163
>gi|239753192 PREDICTED: hypothetical protein [Homo sapiens]
Length = 331
Score = 30.8 bits (68), Expect = 0.81
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 6 LWEIAKA---EVEKRGINGSEGDGAEIAEKFVFFIGSKNGGK-----TTIILRCLDRDEP 57
+W + KA E +++G + G G F F+G +NGG+ ++ R R P
Sbjct: 201 VWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRDGACSIEVLPRTSGRTHP 260
Query: 58 PKPTLALEYTYGRRAKG 74
E G RA G
Sbjct: 261 APAPCLREAASGLRAAG 277
>gi|239747766 PREDICTED: hypothetical protein [Homo sapiens]
Length = 331
Score = 30.8 bits (68), Expect = 0.81
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 6 LWEIAKA---EVEKRGINGSEGDGAEIAEKFVFFIGSKNGGK-----TTIILRCLDRDEP 57
+W + KA E +++G + G G F F+G +NGG+ ++ R R P
Sbjct: 201 VWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRDGACSIEVLPRTSGRTHP 260
Query: 58 PKPTLALEYTYGRRAKG 74
E G RA G
Sbjct: 261 APAPCLREAASGLRAAG 277
>gi|239741632 PREDICTED: hypothetical protein XP_002342252 [Homo
sapiens]
Length = 494
Score = 30.8 bits (68), Expect = 0.81
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 6 LWEIAKA---EVEKRGINGSEGDGAEIAEKFVFFIGSKNGGK-----TTIILRCLDRDEP 57
+W + KA E +++G + G G F F+G +NGG+ ++ R R P
Sbjct: 364 VWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRDGACSIEVLPRTSGRTHP 423
Query: 58 PKPTLALEYTYGRRAKG 74
E G RA G
Sbjct: 424 APAPCLREAASGLRAAG 440
>gi|72534732 dehydrogenase/reductase (SDR family) member 12 isoform
1 [Homo sapiens]
Length = 271
Score = 28.9 bits (63), Expect = 3.1
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 84 FWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKPNDLWPTMENLLQATKSHV 138
FW L +L + + + + + ++DLS P +W +EN Q K HV
Sbjct: 22 FWSLEETAALAKQLPLKSPSENI----FLHIVDLSDPKQIWKFVENFKQEHKLHV 72
>gi|13375997 dehydrogenase/reductase (SDR family) member 12 isoform
2 [Homo sapiens]
Length = 242
Score = 28.9 bits (63), Expect = 3.1
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 84 FWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKPNDLWPTMENLLQATKSHV 138
FW L +L + + + + + ++DLS P +W +EN Q K HV
Sbjct: 22 FWSLEETAALAKQLPLKSPSENI----FLHIVDLSDPKQIWKFVENFKQEHKLHV 72
>gi|6552296 ADP-ribosylation factor-like 4C [Homo sapiens]
Length = 192
Score = 28.1 bits (61), Expect = 5.2
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 34 VFFIGSKNGGKTTIILRCLDRDEPPKPTLALEYTYGRRAKGHNTPKDIA-HFWELGGGTS 92
+ +G + GKTT++ R L +E + + + + T K I+ HFW++GG
Sbjct: 16 IVMLGLDSAGKTTVLYR-LKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWDVGGQEK 74
Query: 93 LLDL 96
L L
Sbjct: 75 LRPL 78
>gi|149363636 plexin B2 [Homo sapiens]
Length = 1838
Score = 27.7 bits (60), Expect = 6.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 34 VFFIGSKNGGKTTIILRCLDRDEPPKPTL 62
VFF+ SK+G K +I LD EP +P +
Sbjct: 1284 VFFLPSKDGDKDVMITGKLDIPEPRRPVV 1312
>gi|8923900 cytidine monophospho-N-acetylneuraminic acid synthetase
[Homo sapiens]
Length = 434
Score = 27.3 bits (59), Expect = 9.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 8 EIAKAEVEKR-GINGSEGDGAEIAEKFVFFIGSKNGGKTTI 47
E++ E KR G++G+ D A+K V +I NGG+ I
Sbjct: 374 EVSDEECLKRVGLSGAPADACSTAQKAVGYICKCNGGRGAI 414
>gi|30520350 ADP-ribosylation factor-like 8 [Homo sapiens]
Length = 179
Score = 27.3 bits (59), Expect = 9.0
Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 30/158 (18%)
Query: 31 EKFVFFIGSKNGGKTTIILRCLDRDEPPKPTLALEYTYGRRAKGHNTPKDI---AHF--W 85
E V +G N GKTTI+ + L E + G N + + HF W
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFLMN----------EVVHTSPTIGSNVEEIVVKNTHFLMW 65
Query: 86 ELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKPNDLWPTMENLLQATKSHVD----KV 141
++GG SL + + T ++LV+D L T E L + +H D V
Sbjct: 66 DIGGQESLRSSWNTYYS----NTEFIILVVDSIDRERLAITKEELYRML-AHEDLRKAAV 120
Query: 142 IMKLGKTNAK---AVSEMRQKIWNNMPKDHP---VSCC 173
++ K + K +E+ + + + KDHP SCC
Sbjct: 121 LIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCC 158
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,823,406
Number of Sequences: 37866
Number of extensions: 332667
Number of successful extensions: 711
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 16
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.