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Search of human proteins with 122937329
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937329 syncollin [Homo sapiens]
(134 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937329 syncollin [Homo sapiens] 283 3e-77
gi|197333703 phosphatidylinositol-specific phospholipase C, X do... 31 0.34
gi|23397570 phosphatidylinositol-specific phospholipase C, X dom... 31 0.34
gi|139394599 hypermethylated in cancer 2 [Homo sapiens] 30 0.58
gi|157384998 low density lipoprotein receptor-related protein 4 ... 30 0.76
gi|169167057 PREDICTED: hypothetical protein [Homo sapiens] 29 0.99
gi|203097724 cadherin-like 29 [Homo sapiens] 29 1.3
gi|88853069 vitronectin precursor [Homo sapiens] 28 2.2
gi|9257217 folate receptor 1 precursor [Homo sapiens] 27 4.9
gi|9257215 folate receptor 1 precursor [Homo sapiens] 27 4.9
gi|9257213 folate receptor 1 precursor [Homo sapiens] 27 4.9
gi|9257207 folate receptor 1 precursor [Homo sapiens] 27 4.9
gi|9257205 folate receptor 1 precursor [Homo sapiens] 27 4.9
gi|4758400 folate receptor 1 precursor [Homo sapiens] 27 4.9
gi|41152107 ubiquitin-like 7 [Homo sapiens] 27 4.9
gi|14249682 ubiquitin-like 7 [Homo sapiens] 27 4.9
gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens] 27 4.9
gi|21361910 zinc finger, DHHC domain containing 12 [Homo sapiens] 27 4.9
gi|4507467 transforming growth factor, beta-induced, 68kDa precu... 27 6.4
gi|31657094 anillin, actin binding protein [Homo sapiens] 26 8.4
>gi|122937329 syncollin [Homo sapiens]
Length = 134
Score = 283 bits (724), Expect = 3e-77
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MSPLRPLLLALALASVPCAQGACPASADLKHSDGTRTCAKLYDKSDPYYENCCGGAELSL 60
MSPLRPLLLALALASVPCAQGACPASADLKHSDGTRTCAKLYDKSDPYYENCCGGAELSL
Sbjct: 1 MSPLRPLLLALALASVPCAQGACPASADLKHSDGTRTCAKLYDKSDPYYENCCGGAELSL 60
Query: 61 ESGADLPYLPSNWANTASSLVVAPRCELTVWSRQGKAGKTHKFSAGTYPRLEEYRRGILG 120
ESGADLPYLPSNWANTASSLVVAPRCELTVWSRQGKAGKTHKFSAGTYPRLEEYRRGILG
Sbjct: 61 ESGADLPYLPSNWANTASSLVVAPRCELTVWSRQGKAGKTHKFSAGTYPRLEEYRRGILG 120
Query: 121 DWSNAISALYCRCS 134
DWSNAISALYCRCS
Sbjct: 121 DWSNAISALYCRCS 134
>gi|197333703 phosphatidylinositol-specific phospholipase C, X
domain containing 2 isoform a [Homo sapiens]
Length = 341
Score = 30.8 bits (68), Expect = 0.34
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 69 LPSNWANTASSLVVAPRCELTVWSRQGKAGKTHKFSAGTYPRLEEYRRGILGDWSNAI 126
+P+ WANT S + E T+ S + G H A PR++ RG++G N +
Sbjct: 230 IPAPWANTTSVRKLILFLETTL-SERASRGSFHVSQAILTPRVKTIARGLVGGLKNTL 286
>gi|23397570 phosphatidylinositol-specific phospholipase C, X domain
containing 2 isoform b [Homo sapiens]
Length = 304
Score = 30.8 bits (68), Expect = 0.34
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 69 LPSNWANTASSLVVAPRCELTVWSRQGKAGKTHKFSAGTYPRLEEYRRGILGDWSNAI 126
+P+ WANT S + E T+ S + G H A PR++ RG++G N +
Sbjct: 230 IPAPWANTTSVRKLILFLETTL-SERASRGSFHVSQAILTPRVKTIARGLVGGLKNTL 286
>gi|139394599 hypermethylated in cancer 2 [Homo sapiens]
Length = 615
Score = 30.0 bits (66), Expect = 0.58
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 16 VPCAQGACPASADLKHSDGTRTCAKLYDKSDPYYENCCGGAELSLE 61
+PCA+G P+S L T T +L+ K + YE GGAE E
Sbjct: 445 IPCAKGF-PSSEQLNAHVETHTEEELFIKEEGAYETGSGGAEEEAE 489
>gi|157384998 low density lipoprotein receptor-related protein 4
[Homo sapiens]
Length = 1905
Score = 29.6 bits (65), Expect = 0.76
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 13 LASVPCAQGACPASADLKHSDGTRTCAKLYDKSDPYYENCCGGAELSLESG 63
L CA G C D+ H DG C D+SD C E +SG
Sbjct: 193 LEEFQCAYGRC--ILDIYHCDGDDDCGDWSDESDCSSHQPCRSGEFMCDSG 241
>gi|169167057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 320
Score = 29.3 bits (64), Expect = 0.99
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 14 ASVPCAQGACPASADLKHSDGTRTCAKLYDKSDPYYENCCGGAELSLESGADLPYLPSNW 73
AS P A + A + L+H D R A+L + P+ + C L + D P P +W
Sbjct: 82 ASAPWASLSTRADSGLRHLDRLRKAARLLFVNTPHVRSPC-PIRSPLPAREDPPLSPQHW 140
Query: 74 ANTASSLVVAPR------CELTVW-SRQGKAGKTHKFSAGTYP 109
L PR E W RQ K +TH A P
Sbjct: 141 G--GEILKFPPREKRASSAEPGHWEKRQDKRLETHPCRAPPLP 181
>gi|203097724 cadherin-like 29 [Homo sapiens]
Length = 788
Score = 28.9 bits (63), Expect = 1.3
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 13 LASVPCA-QGACPASADLKHSDGTRTCAKLYDKSDPYYENCCGGAELSLESGADLPYLPS 71
L+ + CA Q A PA ++ + A+LY P E GA++S+ S DLP+ P
Sbjct: 122 LSHIQCAGQFASPAGEMIQVPETVTPGARLYTLLLPGLE--LHGAQMSIISAQDLPHFPG 179
Query: 72 NWANTASSLVVAP 84
++ + AP
Sbjct: 180 PFSINEQGWLQAP 192
>gi|88853069 vitronectin precursor [Homo sapiens]
Length = 478
Score = 28.1 bits (61), Expect = 2.2
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 1 MSPLRPLLLALALASVPCA-QGACPASADLKHSDGTRTCAKLY-DKSDPYYENCC 53
M+PLRPLL+ LA V A Q +C + ++G K D+ YY++CC
Sbjct: 1 MAPLRPLLILALLAWVALADQESCKG----RCTEGFNVDKKCQCDELCSYYQSCC 51
>gi|9257217 folate receptor 1 precursor [Homo sapiens]
Length = 257
Score = 26.9 bits (58), Expect = 4.9
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 40 KLYDKSDPYYENCCGGAELSLESGADLPYL-PSNWANTASSLVVAPRCE 87
KL+++ P+ +N C S E+ D+ YL NW + +AP C+
Sbjct: 52 KLHEQCRPWRKNACCSTNTSQEAHKDVSYLYRFNWNHCGE---MAPACK 97
>gi|9257215 folate receptor 1 precursor [Homo sapiens]
Length = 257
Score = 26.9 bits (58), Expect = 4.9
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 40 KLYDKSDPYYENCCGGAELSLESGADLPYL-PSNWANTASSLVVAPRCE 87
KL+++ P+ +N C S E+ D+ YL NW + +AP C+
Sbjct: 52 KLHEQCRPWRKNACCSTNTSQEAHKDVSYLYRFNWNHCGE---MAPACK 97
>gi|9257213 folate receptor 1 precursor [Homo sapiens]
Length = 257
Score = 26.9 bits (58), Expect = 4.9
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 40 KLYDKSDPYYENCCGGAELSLESGADLPYL-PSNWANTASSLVVAPRCE 87
KL+++ P+ +N C S E+ D+ YL NW + +AP C+
Sbjct: 52 KLHEQCRPWRKNACCSTNTSQEAHKDVSYLYRFNWNHCGE---MAPACK 97
>gi|9257207 folate receptor 1 precursor [Homo sapiens]
Length = 257
Score = 26.9 bits (58), Expect = 4.9
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 40 KLYDKSDPYYENCCGGAELSLESGADLPYL-PSNWANTASSLVVAPRCE 87
KL+++ P+ +N C S E+ D+ YL NW + +AP C+
Sbjct: 52 KLHEQCRPWRKNACCSTNTSQEAHKDVSYLYRFNWNHCGE---MAPACK 97
>gi|9257205 folate receptor 1 precursor [Homo sapiens]
Length = 257
Score = 26.9 bits (58), Expect = 4.9
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 40 KLYDKSDPYYENCCGGAELSLESGADLPYL-PSNWANTASSLVVAPRCE 87
KL+++ P+ +N C S E+ D+ YL NW + +AP C+
Sbjct: 52 KLHEQCRPWRKNACCSTNTSQEAHKDVSYLYRFNWNHCGE---MAPACK 97
>gi|4758400 folate receptor 1 precursor [Homo sapiens]
Length = 257
Score = 26.9 bits (58), Expect = 4.9
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 40 KLYDKSDPYYENCCGGAELSLESGADLPYL-PSNWANTASSLVVAPRCE 87
KL+++ P+ +N C S E+ D+ YL NW + +AP C+
Sbjct: 52 KLHEQCRPWRKNACCSTNTSQEAHKDVSYLYRFNWNHCGE---MAPACK 97
>gi|41152107 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 26.9 bits (58), Expect = 4.9
Identities = 19/67 (28%), Positives = 23/67 (34%)
Query: 7 LLLALALASVPCAQGACPASADLKHSDGTRTCAKLYDKSDPYYENCCGGAELSLESGADL 66
L ALALAS P + P HS GT + P + A +
Sbjct: 272 LATALALASTPESSSHTPTPGTQGHSSGTSPMSSGVQSGTPITNDLFSQALQHALQASGQ 331
Query: 67 PYLPSNW 73
P L S W
Sbjct: 332 PSLQSQW 338
>gi|14249682 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 26.9 bits (58), Expect = 4.9
Identities = 19/67 (28%), Positives = 23/67 (34%)
Query: 7 LLLALALASVPCAQGACPASADLKHSDGTRTCAKLYDKSDPYYENCCGGAELSLESGADL 66
L ALALAS P + P HS GT + P + A +
Sbjct: 272 LATALALASTPESSSHTPTPGTQGHSSGTSPMSSGVQSGTPITNDLFSQALQHALQASGQ 331
Query: 67 PYLPSNW 73
P L S W
Sbjct: 332 PSLQSQW 338
>gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]
Length = 4861
Score = 26.9 bits (58), Expect = 4.9
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 32 SDGTRTCAKLYDKSDPYYENCC-----GGAELSLESGADLPYLPSNWANTASSLVVAPRC 86
+DGT + K + C G AE SL S +D + P +W+ + L A
Sbjct: 3448 NDGTIRVWNVTKKQYSLQQTCVFNRLEGDAEESLGSPSDPSFSPVSWSISGKYLAGALEK 3507
Query: 87 ELTVWSRQGKAG----KTHKFSAGTYP 109
+ +W G G + H SA +P
Sbjct: 3508 MVNIWQVNGGKGLVDIQPHWVSALAWP 3534
>gi|21361910 zinc finger, DHHC domain containing 12 [Homo sapiens]
Length = 267
Score = 26.9 bits (58), Expect = 4.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 30 KHSDGTRTCAKLYDKSDPYYENCCG 54
+H R C + YD P+ ENC G
Sbjct: 111 RHCRECRRCVRRYDHHCPWMENCVG 135
>gi|4507467 transforming growth factor, beta-induced, 68kDa
precursor [Homo sapiens]
Length = 683
Score = 26.6 bits (57), Expect = 6.4
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
Query: 4 LRPLLLALALASVPCAQGACPASAD----LKHS------DGTRTCA--KLYDKSDPYYEN 51
+R L LALALA P A A PA + L+HS G CA K+ + Y+ N
Sbjct: 5 VRLLALALALALGPAATLAGPAKSPYQLVLQHSRLRGRQHGPNVCAVQKVIGTNRKYFTN 64
Query: 52 C 52
C
Sbjct: 65 C 65
>gi|31657094 anillin, actin binding protein [Homo sapiens]
Length = 1124
Score = 26.2 bits (56), Expect = 8.4
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 79 SLVVAPRCELTVWSRQGKAGKTHKFSAGTYPRLE 112
SLV PR EL SR ++ K KF PR E
Sbjct: 624 SLVSTPRLELKDTSRSDESPKPGKFQRTRVPRAE 657
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,632,148
Number of Sequences: 37866
Number of extensions: 237120
Number of successful extensions: 513
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 20
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.