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Search of human proteins with 122937311
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937311 solute carrier family 35, member F4 [Homo sapiens]
(521 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937311 solute carrier family 35, member F4 [Homo sapiens] 1046 0.0
gi|27735127 solute carrier family 35, member F3 [Homo sapiens] 451 e-127
gi|21361959 solute carrier family 35, member F5 [Homo sapiens] 57 3e-08
gi|31542943 solute carrier family 35, member F2 [Homo sapiens] 45 1e-04
gi|189027121 solute carrier family 35, member F1 [Homo sapiens] 45 2e-04
gi|197927233 transmembrane protein 20 isoform 1 [Homo sapiens] 37 0.057
gi|23397492 transmembrane protein 20 isoform 2 [Homo sapiens] 37 0.057
gi|27881499 solute carrier family 35, member C2 isoform a [Homo ... 37 0.057
gi|21314776 solute carrier family 35, member C2 isoform a [Homo ... 37 0.057
gi|84662753 G protein-coupled receptor 149 [Homo sapiens] 34 0.37
gi|4885311 lysophosphatidic acid receptor 4 [Homo sapiens] 32 1.4
gi|190358541 solute carrier family 39 (zinc transporter), member... 31 3.1
gi|19923424 myotubularin related protein 9 [Homo sapiens] 30 5.4
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 30 5.4
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 30 5.4
gi|21389361 proline racemase-like [Homo sapiens] 30 7.0
gi|82659105 protein tyrosine phosphatase-like, member A [Homo sa... 29 9.1
>gi|122937311 solute carrier family 35, member F4 [Homo sapiens]
Length = 521
Score = 1046 bits (2704), Expect = 0.0
Identities = 521/521 (100%), Positives = 521/521 (100%)
Query: 1 MDELLLDLFHKLTSGRQLAAGNGLCGISHKEQEVWKPGHNILVKMRKEDKSLVWLIHSTL 60
MDELLLDLFHKLTSGRQLAAGNGLCGISHKEQEVWKPGHNILVKMRKEDKSLVWLIHSTL
Sbjct: 1 MDELLLDLFHKLTSGRQLAAGNGLCGISHKEQEVWKPGHNILVKMRKEDKSLVWLIHSTL 60
Query: 61 ARYTQVTNFLGTSRSSVTRCKPGANCPSSHSGISRQLSPLSVTEDSSAPILELQNQGSSG 120
ARYTQVTNFLGTSRSSVTRCKPGANCPSSHSGISRQLSPLSVTEDSSAPILELQNQGSSG
Sbjct: 61 ARYTQVTNFLGTSRSSVTRCKPGANCPSSHSGISRQLSPLSVTEDSSAPILELQNQGSSG 120
Query: 121 VCGHRVERQNRSADDGTQTHSENSSQENRIKARCLSCTSMVLKGIWGLLIILSVSSSWVG 180
VCGHRVERQNRSADDGTQTHSENSSQENRIKARCLSCTSMVLKGIWGLLIILSVSSSWVG
Sbjct: 121 VCGHRVERQNRSADDGTQTHSENSSQENRIKARCLSCTSMVLKGIWGLLIILSVSSSWVG 180
Query: 181 TTQIVKITYKNFYCPFFMTWFSTNWNIMFFPVYYSGHLATAQEKQSPMKKFRECSRIFGE 240
TTQIVKITYKNFYCPFFMTWFSTNWNIMFFPVYYSGHLATAQEKQSPMKKFRECSRIFGE
Sbjct: 181 TTQIVKITYKNFYCPFFMTWFSTNWNIMFFPVYYSGHLATAQEKQSPMKKFRECSRIFGE 240
Query: 241 DGLTLKLFLKRTAPFSILWTLTNYLYLLALKKLTATDVSALFCCNKAFVFLLSWIVLKDR 300
DGLTLKLFLKRTAPFSILWTLTNYLYLLALKKLTATDVSALFCCNKAFVFLLSWIVLKDR
Sbjct: 241 DGLTLKLFLKRTAPFSILWTLTNYLYLLALKKLTATDVSALFCCNKAFVFLLSWIVLKDR 300
Query: 301 FMGVRIVAAIMAITGIVMMAYADNFHADSIIGVAFAVGSASTSALYKVLFKMFLGSANFG 360
FMGVRIVAAIMAITGIVMMAYADNFHADSIIGVAFAVGSASTSALYKVLFKMFLGSANFG
Sbjct: 301 FMGVRIVAAIMAITGIVMMAYADNFHADSIIGVAFAVGSASTSALYKVLFKMFLGSANFG 360
Query: 361 EAAHFVSTLGFFNLIFISFTPVILYFTKVEHWSSFAALPWGCLCGMAGLWLAFNILVNVG 420
EAAHFVSTLGFFNLIFISFTPVILYFTKVEHWSSFAALPWGCLCGMAGLWLAFNILVNVG
Sbjct: 361 EAAHFVSTLGFFNLIFISFTPVILYFTKVEHWSSFAALPWGCLCGMAGLWLAFNILVNVG 420
Query: 421 VVLTYPILISIGTVLSVPGNAAVDLLKQEVIFNVVRLAATIIICIGFLLMLLPEEWDEIT 480
VVLTYPILISIGTVLSVPGNAAVDLLKQEVIFNVVRLAATIIICIGFLLMLLPEEWDEIT
Sbjct: 421 VVLTYPILISIGTVLSVPGNAAVDLLKQEVIFNVVRLAATIIICIGFLLMLLPEEWDEIT 480
Query: 481 LRFINSLKEKKSEEHVDDVTDPSIHLRGRGRANGTVSIPLA 521
LRFINSLKEKKSEEHVDDVTDPSIHLRGRGRANGTVSIPLA
Sbjct: 481 LRFINSLKEKKSEEHVDDVTDPSIHLRGRGRANGTVSIPLA 521
>gi|27735127 solute carrier family 35, member F3 [Homo sapiens]
Length = 490
Score = 451 bits (1161), Expect = e-127
Identities = 213/364 (58%), Positives = 274/364 (75%), Gaps = 1/364 (0%)
Query: 149 RIKARCLSCTSMVLKGI-WGLLIILSVSSSWVGTTQIVKITYKNFYCPFFMTWFSTNWNI 207
R RC +C+ LK I WG+ ++L V SSW G+TQ+ K+T++ F PF +TWF+TNWN
Sbjct: 119 RASRRCWTCSRAQLKKIFWGVAVVLCVCSSWAGSTQLAKLTFRKFDAPFTLTWFATNWNF 178
Query: 208 MFFPVYYSGHLATAQEKQSPMKKFRECSRIFGEDGLTLKLFLKRTAPFSILWTLTNYLYL 267
+FFP+YY GH+ + EKQS +++REC R FG++GLTLK+F + APF +LWTLTNYLYL
Sbjct: 179 LFFPLYYVGHVCKSTEKQSVKQRYRECCRFFGDNGLTLKVFFTKAAPFGVLWTLTNYLYL 238
Query: 268 LALKKLTATDVSALFCCNKAFVFLLSWIVLKDRFMGVRIVAAIMAITGIVMMAYADNFHA 327
A+KK+ TDVS LFCCNKAFVFLLSWIVL+DRFMGVRIVAAI+AI GIVMM YAD FH+
Sbjct: 239 HAIKKINTTDVSVLFCCNKAFVFLLSWIVLRDRFMGVRIVAAILAIAGIVMMTYADGFHS 298
Query: 328 DSIIGVAFAVGSASTSALYKVLFKMFLGSANFGEAAHFVSTLGFFNLIFISFTPVILYFT 387
S+IG+A V SAS SALYKVLFK+ LGSA FGEAA F+S LG FN++FI+ P+ILYFT
Sbjct: 299 HSVIGIALVVASASMSALYKVLFKLLLGSAKFGEAALFLSILGVFNILFITCIPIILYFT 358
Query: 388 KVEHWSSFAALPWGCLCGMAGLWLAFNILVNVGVVLTYPILISIGTVLSVPGNAAVDLLK 447
KVE+WSSF +PWG LCG + L L FNI++N G+ +TYP L+S+G VLS+P NA +D
Sbjct: 359 KVEYWSSFDDIPWGNLCGFSVLLLTFNIVLNFGIAVTYPTLMSLGIVLSIPVNAVIDHYT 418
Query: 448 QEVIFNVVRLAATIIICIGFLLMLLPEEWDEITLRFINSLKEKKSEEHVDDVTDPSIHLR 507
+++FN VR+ A III +GFLL+LLPEEWD ++ + LK +K EE + D S +
Sbjct: 419 SQIVFNGVRVIAIIIIGLGFLLLLLPEEWDVWLIKLLTRLKVRKKEEPAEGAADLSSGPQ 478
Query: 508 GRGR 511
+ R
Sbjct: 479 SKNR 482
>gi|21361959 solute carrier family 35, member F5 [Homo sapiens]
Length = 523
Score = 57.4 bits (137), Expect = 3e-08
Identities = 66/286 (23%), Positives = 124/286 (43%), Gaps = 15/286 (5%)
Query: 206 NIMFFPVYYSGHLATAQEKQS--PMKKFRECSRIFGEDGLTLKLFLKRTAPFSILWTLTN 263
NIM S H A+ + P+K+ + G+ LT K + F +W L N
Sbjct: 198 NIMEIRQLPSSHALEAKLSRMSYPVKEQESILKTVGK--LTATQVAKISFFFCFVWFLAN 255
Query: 264 YLYLLALKKLTATDVSALFCCNKAFVFLLSWIVLK---DRFMGVRIVAAIMAITGIVM-- 318
Y AL V+ L + F +L+ + DRF +++A I++I G+V+
Sbjct: 256 LSYQEALSDTQVAIVNILSSTSGLFTLILAAVFPSNSGDRFTLSKLLAVILSIGGVVLVN 315
Query: 319 MAYADNFHADSIIGVAFAVGSASTSALYKVLFKMFLGSANFGEAAHFVSTLGFFNLIFIS 378
+A ++ +G +++ A A+Y V+ K + + + F +G FNL+ +
Sbjct: 316 LAGSEKPAGRDTVGSIWSLAGAMLYAVYIVMIKRKVDREDKLDIPMFFGFVGLFNLLLLW 375
Query: 379 FTPVILYFTKVEHWSSFAALPWGCLC--GMAGLWLAFNILVNVGVVLTYPILISIGTVLS 436
+L++T E + + C+ G+ G L+ L G LT ++ ++ L+
Sbjct: 376 PGFFLLHYTGFEDFEFPNKVVLMCIIINGLIGTVLS-EFLWLWGCFLTSSLIGTLALSLT 434
Query: 437 VPGNAAVDLLKQEVIFNVVRLAATIIICIGFLLMLL---PEEWDEI 479
+P + D+ Q+V F+ + A I + F ++ L WD +
Sbjct: 435 IPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTLLCHYNNWDPV 480
Score = 31.2 bits (69), Expect = 2.4
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 167 GLLIILSVSSSWVGTTQIVKITYKNFYCPFFMTWFSTNWNIMF 209
G++I+L V WV ++++ + + PFF T+ T+ +++
Sbjct: 72 GIVILLLVDVIWVASSELTSYVFTQYNKPFFSTFAKTSMFVLY 114
>gi|31542943 solute carrier family 35, member F2 [Homo sapiens]
Length = 374
Score = 45.4 bits (106), Expect = 1e-04
Identities = 48/216 (22%), Positives = 89/216 (41%), Gaps = 15/216 (6%)
Query: 263 NYLYLLALKKLTATDVSALFCCNKAFVFLLSWIVLKDRFMGVRIVAAIMAITGIVMMAYA 322
NY+ + A + T T V L C + LSW +L R+ + +A + + G+ M A
Sbjct: 122 NYVIVRAYQYTTLTSVQLLDCFGIPVLMALSWFILHARYRVIHFIAVAVCLLGVGTMVGA 181
Query: 323 -------DNFHADSIIGVAFAVGSASTSALYKVLFKMFLGSANFGEAAHFVSTLGFFNLI 375
DN +D +IG + AS A+ V + + + E F+ +G F I
Sbjct: 182 DILAGREDNSGSDVLIGDILVLLGASLYAISNVCEEYIVKKLSRQE---FLGMVGLFGTI 238
Query: 376 FISFTPVILYFTKVE--HWSSFAALPWGCLCGMAGLWLAFNILVNVGVVLTYPILISIGT 433
+I+ + + HW AL + +F LV + +T +++G
Sbjct: 239 ISGIQLLIVEYKDIASIHWDWKIALLFVAFALCMFCLYSFMPLV---IKVTSATSVNLGI 295
Query: 434 VLSVPGNAAVDLLKQEVIFNVVRLAATIIICIGFLL 469
+ + + V L F+ + + + +I +GF+L
Sbjct: 296 LTADLYSLFVGLFLFGYKFSGLYILSFTVIMVGFIL 331
>gi|189027121 solute carrier family 35, member F1 [Homo sapiens]
Length = 408
Score = 45.1 bits (105), Expect = 2e-04
Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 23/209 (11%)
Query: 239 GEDGLTLKLFLKRTAPFSILWTL---TNYLYLLALKKLTATDVSALFCCNKAFVFLLSWI 295
GE+ L L + +R + IL + NYL + A + T T + L C V LLSW
Sbjct: 117 GEENL-LAILRRRWWKYMILGLIDLEANYLVVKAYQYTTLTSIQLLDCFVIPVVILLSWF 175
Query: 296 VLKDRFMGVRIVAAIMAITGIVMMAYAD-------NFHADSIIGVAFAVGSASTSALYKV 348
L R+ V + ++ I G+ M AD + ++G +G A+ + V
Sbjct: 176 FLLIRYKAVHFIGIVVCILGMGCMVGADVLVGRHQGAGENKLVGDLLVLGGATLYGISNV 235
Query: 349 LFKMFLGSANFGEAAHFVSTLGFFNLIFISFTPVILYFTKVEHWSSFAALPWGCLCGMAG 408
+ + + + F+ +G F F I+ EH +PW G+
Sbjct: 236 WEEYIIRTLS---RVEFLGMIGLFGAFFSGIQLAIM-----EH-KELLKVPWDWQIGL-- 284
Query: 409 LWLAFNILVNVGVVLTYPILISIGTVLSV 437
L++ F+ + G+ P++I + SV
Sbjct: 285 LYVGFSACM-FGLYSFMPVVIKKTSATSV 312
>gi|197927233 transmembrane protein 20 isoform 1 [Homo sapiens]
Length = 365
Score = 36.6 bits (83), Expect = 0.057
Identities = 31/175 (17%), Positives = 76/175 (43%), Gaps = 26/175 (14%)
Query: 257 ILWTLTNYLYLLALKKLTATDVSALFCCNKAFVFLLSWIVLKDRFMGVRIVAAIMAITGI 316
+L + L A + ++ D + + + F + +WI LK+++ + + ITG+
Sbjct: 138 VLGSTAMMLIYYAYQTMSLADATVITFSSPVFTSIFAWICLKEKYSPWDALFTVFTITGV 197
Query: 317 VMM-----------AYADNFHADSIIGVAFAVGSASTSALYKVLFKMFLGSANFGEAAHF 365
+++ + + ++ + G A+GSA +A V+ + G++ +
Sbjct: 198 ILIVRPPFLFGSDTSGMEESYSGHLKGTFAAIGSAVFAASTLVILR------KMGKSVDY 251
Query: 366 VSTLGFFNLIFISFTPVILYFTKVEHWSSFAALPWGCLCGMAGLWLAFNILVNVG 420
++ ++ + + ++ + + WS LP+ CG+ L+L F L +G
Sbjct: 252 FLSIWYY--VVLGLVESVIILSVLGEWS----LPY---CGLDRLFLIFIGLFGLG 297
>gi|23397492 transmembrane protein 20 isoform 2 [Homo sapiens]
Length = 364
Score = 36.6 bits (83), Expect = 0.057
Identities = 31/175 (17%), Positives = 76/175 (43%), Gaps = 26/175 (14%)
Query: 257 ILWTLTNYLYLLALKKLTATDVSALFCCNKAFVFLLSWIVLKDRFMGVRIVAAIMAITGI 316
+L + L A + ++ D + + + F + +WI LK+++ + + ITG+
Sbjct: 137 VLGSTAMMLIYYAYQTMSLADATVITFSSPVFTSIFAWICLKEKYSPWDALFTVFTITGV 196
Query: 317 VMM-----------AYADNFHADSIIGVAFAVGSASTSALYKVLFKMFLGSANFGEAAHF 365
+++ + + ++ + G A+GSA +A V+ + G++ +
Sbjct: 197 ILIVRPPFLFGSDTSGMEESYSGHLKGTFAAIGSAVFAASTLVILR------KMGKSVDY 250
Query: 366 VSTLGFFNLIFISFTPVILYFTKVEHWSSFAALPWGCLCGMAGLWLAFNILVNVG 420
++ ++ + + ++ + + WS LP+ CG+ L+L F L +G
Sbjct: 251 FLSIWYY--VVLGLVESVIILSVLGEWS----LPY---CGLDRLFLIFIGLFGLG 296
>gi|27881499 solute carrier family 35, member C2 isoform a [Homo
sapiens]
Length = 365
Score = 36.6 bits (83), Expect = 0.057
Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 27/229 (11%)
Query: 163 KGIWGLLIILSVSSSWVGTTQIVKITYKNFYCPFFMTWFSTNWNIMFFPVYYSGHLATAQ 222
K + L ++L +G T K K+F+ P FMT HLA
Sbjct: 13 KAVLTLGLVLLYYCFSIGITFYNKWLTKSFHFPLFMTML---------------HLAVIF 57
Query: 223 EKQSPMKKFRECSRIFGEDGLTLKLFLKRTAPFSILWT----LTNYLYLLALKKL-TATD 277
+ + +CS L+ +L+R AP ++ L+N+ +L L T T
Sbjct: 58 LFSALSRALVQCSSHRARVVLSWADYLRRVAPTALATALDVGLSNWSFLYVTVSLYTMTK 117
Query: 278 VSALFCCNKAFVFLLSWIVLKDRFMGVRIVAAIMAITGIVMMAYADNFHADSIIGVAFAV 337
SA+ F+ + S I + ++ ++ G+ M Y ++ G A +
Sbjct: 118 SSAVL-----FILIFSLIFKLEELRAALVLVVLLIAGGLFMFTYKST--QFNVEGFALVL 170
Query: 338 GSASTSALYKVLFKMFLGSANFGEAAHFVSTLGFFNLIFISFTPVILYF 386
G++ + L +M L A G + L+F+ P+ F
Sbjct: 171 GASFIGGIRWTLTQMLLQKAELGLQNPIDTMFHLQPLMFLGLFPLFAVF 219
>gi|21314776 solute carrier family 35, member C2 isoform a [Homo
sapiens]
Length = 365
Score = 36.6 bits (83), Expect = 0.057
Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 27/229 (11%)
Query: 163 KGIWGLLIILSVSSSWVGTTQIVKITYKNFYCPFFMTWFSTNWNIMFFPVYYSGHLATAQ 222
K + L ++L +G T K K+F+ P FMT HLA
Sbjct: 13 KAVLTLGLVLLYYCFSIGITFYNKWLTKSFHFPLFMTML---------------HLAVIF 57
Query: 223 EKQSPMKKFRECSRIFGEDGLTLKLFLKRTAPFSILWT----LTNYLYLLALKKL-TATD 277
+ + +CS L+ +L+R AP ++ L+N+ +L L T T
Sbjct: 58 LFSALSRALVQCSSHRARVVLSWADYLRRVAPTALATALDVGLSNWSFLYVTVSLYTMTK 117
Query: 278 VSALFCCNKAFVFLLSWIVLKDRFMGVRIVAAIMAITGIVMMAYADNFHADSIIGVAFAV 337
SA+ F+ + S I + ++ ++ G+ M Y ++ G A +
Sbjct: 118 SSAVL-----FILIFSLIFKLEELRAALVLVVLLIAGGLFMFTYKST--QFNVEGFALVL 170
Query: 338 GSASTSALYKVLFKMFLGSANFGEAAHFVSTLGFFNLIFISFTPVILYF 386
G++ + L +M L A G + L+F+ P+ F
Sbjct: 171 GASFIGGIRWTLTQMLLQKAELGLQNPIDTMFHLQPLMFLGLFPLFAVF 219
>gi|84662753 G protein-coupled receptor 149 [Homo sapiens]
Length = 731
Score = 33.9 bits (76), Expect = 0.37
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Query: 392 WSSFAALPWGCLCGMAGLW---------LAFNILVNVGVVLTYPILIS 430
W +F PWGCL + + LAF +LV + V LT+ +L S
Sbjct: 172 WGAFVRTPWGCLVDCSSSYVLFLSIVYALAFGLLVGLSVPLTHRLLCS 219
>gi|4885311 lysophosphatidic acid receptor 4 [Homo sapiens]
Length = 370
Score = 32.0 bits (71), Expect = 1.4
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 329 SIIGVAFAVGSASTS-ALYKVLFKMFLGSANFGEAAHFVSTLGFFNLIFISFTPVILYFT 387
++ V F +G + S +L+ F+M + S E A F++ L +L+F+ P +++
Sbjct: 44 AVYSVVFILGLITNSVSLFVFCFRMKMRS----ETAIFITNLAVSDLLFVCTLPFKIFYN 99
Query: 388 KVEHWSSFAALPWG-CLCGMAGLWLAFNI 415
HW P+G LC ++G NI
Sbjct: 100 FNRHW------PFGDTLCKISGTAFLTNI 122
>gi|190358541 solute carrier family 39 (zinc transporter), member 14
isoform b [Homo sapiens]
Length = 492
Score = 30.8 bits (68), Expect = 3.1
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 13/77 (16%)
Query: 422 VLTYPILISIGTVLSVPGNAAVDLLKQEVIFNVVR---LAATIIICIGFLLMLLPEEWDE 478
VLTY I +SIGT+LS NA L+ + FN + ++ + ++ GF L E
Sbjct: 186 VLTYFIALSIGTLLS---NALFQLIPEAFGFNPLEDYYVSKSAVVFGGFYLFFFTE---- 238
Query: 479 ITLRFINSLKEKKSEEH 495
+ + L ++K+E H
Sbjct: 239 ---KILKILLKQKNEHH 252
>gi|19923424 myotubularin related protein 9 [Homo sapiens]
Length = 549
Score = 30.0 bits (66), Expect = 5.4
Identities = 11/44 (25%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 38 GHNILVKMRKEDKSLVWLIHSTLARYTQVTNFLGTSRSSVTRCK 81
GH++++ R+++ +WL+HS + + F+G+ + + +CK
Sbjct: 33 GHHLILSSRQDNTEELWLLHSNIDAIDK--RFVGSLGTIIIKCK 74
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 30.0 bits (66), Expect = 5.4
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 73 SRSSVTRCKPGANCPSSHSGISRQLSPLSVTEDS---SAPILELQNQGSSGVCGHRVERQ 129
SRSS +R ++ PSS SR S S + S S+ +++GS R R
Sbjct: 206 SRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRG 265
Query: 130 NRSADDGTQTHSENSSQENRIKARCLSCTS 159
+ S + + S +S + NR ++R S +S
Sbjct: 266 SSSPRKRSYSSSSSSPERNRKRSRSRSSSS 295
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 30.0 bits (66), Expect = 5.4
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 73 SRSSVTRCKPGANCPSSHSGISRQLSPLSVTEDS---SAPILELQNQGSSGVCGHRVERQ 129
SRSS +R ++ PSS SR S S + S S+ +++GS R R
Sbjct: 206 SRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRG 265
Query: 130 NRSADDGTQTHSENSSQENRIKARCLSCTS 159
+ S + + S +S + NR ++R S +S
Sbjct: 266 SSSPRKRSYSSSSSSPERNRKRSRSRSSSS 295
>gi|21389361 proline racemase-like [Homo sapiens]
Length = 354
Score = 29.6 bits (65), Expect = 7.0
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 87 PSSHSGISRQLSPLSVTEDSSAPILELQNQGSSGVCGHRVERQNRSA-DDGTQTHSENSS 145
P H + + S D+ +L L N+G S +CGH V R A D G +
Sbjct: 69 PRGHRDMYGAVLVPSELPDAHLGVLFLHNEGYSSMCGHAVLALGRFALDFGLVPAPPAGT 128
Query: 146 QENRIKARC 154
+E R+ C
Sbjct: 129 REARVNIHC 137
>gi|82659105 protein tyrosine phosphatase-like, member A [Homo
sapiens]
Length = 288
Score = 29.3 bits (64), Expect = 9.1
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 182 TQIVKITYKNF----YCPFFMTWFSTNWNIMFFPVYYSGHLATAQEKQSPMKK 230
T+I + ++ F + P+F+ W N+ I+ +PV +G L T +KK
Sbjct: 178 TEITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALPHVKK 230
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,278,800
Number of Sequences: 37866
Number of extensions: 731205
Number of successful extensions: 2452
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2436
Number of HSP's gapped (non-prelim): 21
length of query: 521
length of database: 18,247,518
effective HSP length: 107
effective length of query: 414
effective length of database: 14,195,856
effective search space: 5877084384
effective search space used: 5877084384
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.