Guide to the Human Genome
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Name: FLJ40125 Sequence: fasta or formatted (430aa) NCBI GI: 122937199
Description:

protein phosphatase 1B-like

Referenced in:

Serine / Threonine Protein Phosphatases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.0         60           2
 C cysteine            3.3         14           1
 D aspartate           4.0         17           1
 E glutamate           9.5         41           7
 F phenylalanine       2.3         10           1
 G glycine             9.8         42           3
 H histidine           2.1          9           1
 I isoleucine          1.9          8           1
 K lysine              2.3         10           3
 L leucine            12.6         54           2
 M methionine          1.2          5           1
 N asparagine          0.7          3           1
 P proline             6.7         29           2
 Q glutamine           2.8         12           1
 R arginine           10.2         44           4
 S serine              6.0         26           1
 T threonine           3.5         15           1
 V valine              5.1         22           2
 W tryptophan          1.4          6           1
 Y tyrosine            0.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein phosphatase 1B-like 
PPM1B                 0.329   protein phosphatase 1B isoform 5 
PPM1B                 0.327   protein phosphatase 1B isoform 1 
PPM1B                 0.327   protein phosphatase 1B isoform 2 
PPM1A                 0.323   protein phosphatase 1A isoform 3 
PPM1A                 0.319   protein phosphatase 1A isoform 1 
PPM1B                 0.283   protein phosphatase 1B isoform 4 
PPM1A                 0.277   protein phosphatase 1A isoform 2 
PPM1F                 0.127   protein phosphatase 1F 
PPM1G                 0.106   protein phosphatase 1G 
PPM1G                 0.106   protein phosphatase 1G 
PPM1L                 0.099   protein phosphatase 1 (formerly 2C)-like 
ILKAP                 0.095   integrin-linked kinase-associated protein phosphatas...
PPM1E                 0.092   protein phosphatase 1E 
PPM1D                 0.085   protein phosphatase 1D 
PPM1K                 0.070   protein phosphatase 1K (PP2C domain containing) [Ho...
PPM1B                 0.056   protein phosphatase 1B isoform 3 
PPM1M                 0.044   protein phosphatase 1M isoform a 
PDP1                  0.036   pyruvate dehyrogenase phosphatase catalytic subunit ...
PDP1                  0.036   pyruvate dehyrogenase phosphatase catalytic subunit...
PDP1                  0.036   pyruvate dehyrogenase phosphatase catalytic subunit...
PDP1                  0.036   pyruvate dehyrogenase phosphatase catalytic subunit...
PDP1                  0.036   pyruvate dehyrogenase phosphatase catalytic subunit...
PPM1M                 0.031   protein phosphatase 1M isoform b 
PPM1J                 0.030   protein phosphatase 1J (PP2C domain containing) [Hom...
PDP2                  0.029   pyruvate dehydrogenase phosphatase isoenzyme 2 [Homo...
PPM1H                 0.024   protein phosphatase 1H (PP2C domain containing) [Ho...
MAP3K7IP1             0.015   mitogen-activated protein kinase kinase kinase 7 inte...
MAP3K7IP1             0.015   mitogen-activated protein kinase kinase kinase 7 int...
BRD2                  0.014   bromodomain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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