Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 29029552
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29029552 cat eye syndrome critical region protein 1 isoform
b [Homo sapiens]
(270 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29029552 cat eye syndrome critical region protein 1 isoform b... 554 e-158
gi|29029550 cat eye syndrome critical region protein 1 isoform a... 531 e-151
gi|47078295 adenosine deaminase [Homo sapiens] 46 3e-05
gi|4502079 adenosine monophosphate deaminase 3 isoform 1A [Homo ... 46 4e-05
gi|70906428 adenosine monophosphate deaminase 3 isoform 1C [Homo... 46 4e-05
gi|70906426 adenosine monophosphate deaminase 3 isoform 1B [Homo... 46 4e-05
gi|4557311 adenosine monophosphate deaminase 1 (isoform M) [Homo... 38 0.011
gi|55925574 adenosine monophosphate deaminase 2 (isoform L) isof... 36 0.031
gi|34147621 adenosine monophosphate deaminase 2 (isoform L) isof... 36 0.031
gi|21264318 adenosine monophosphate deaminase 2 (isoform L) isof... 36 0.031
gi|226693318 adenosine deaminase-like isoform 1 [Homo sapiens] 34 0.15
gi|71902540 ataxia telangiectasia mutated isoform 1 [Homo sapiens] 28 6.5
gi|169218268 PREDICTED: similar to Serine-protein kinase ATM, pa... 28 6.5
>gi|29029552 cat eye syndrome critical region protein 1 isoform b
[Homo sapiens]
Length = 270
Score = 554 bits (1428), Expect = e-158
Identities = 270/270 (100%), Positives = 270/270 (100%)
Query: 1 MDSLEWNWALVYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDHRSKDVAVI 60
MDSLEWNWALVYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDHRSKDVAVI
Sbjct: 1 MDSLEWNWALVYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDHRSKDVAVI 60
Query: 61 AESIRMAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGETD 120
AESIRMAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGETD
Sbjct: 61 AESIRMAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGETD 120
Query: 121 WQGTSIDRNILDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDL 180
WQGTSIDRNILDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDL
Sbjct: 121 WQGTSIDRNILDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDL 180
Query: 181 RNHPVATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIK 240
RNHPVATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIK
Sbjct: 181 RNHPVATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIK 240
Query: 241 YSTLLESEKNTFMEIWKKRWDKFIADVATK 270
YSTLLESEKNTFMEIWKKRWDKFIADVATK
Sbjct: 241 YSTLLESEKNTFMEIWKKRWDKFIADVATK 270
>gi|29029550 cat eye syndrome critical region protein 1 isoform a
precursor [Homo sapiens]
Length = 511
Score = 531 bits (1368), Expect = e-151
Identities = 260/260 (100%), Positives = 260/260 (100%)
Query: 11 VYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDHRSKDVAVIAESIRMAMGL 70
VYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDHRSKDVAVIAESIRMAMGL
Sbjct: 252 VYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDHRSKDVAVIAESIRMAMGL 311
Query: 71 RIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNI 130
RIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNI
Sbjct: 312 RIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNI 371
Query: 131 LDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMA 190
LDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMA
Sbjct: 372 LDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMA 431
Query: 191 TGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEKN 250
TGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEKN
Sbjct: 432 TGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEKN 491
Query: 251 TFMEIWKKRWDKFIADVATK 270
TFMEIWKKRWDKFIADVATK
Sbjct: 492 TFMEIWKKRWDKFIADVATK 511
>gi|47078295 adenosine deaminase [Homo sapiens]
Length = 363
Score = 46.2 bits (108), Expect = 3e-05
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 13/187 (6%)
Query: 76 TVVAGFDLVGHEDTGHS--LHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNILDA 133
TVVA DL G E S L + +A K G+ HAGE + + +D
Sbjct: 176 TVVA-IDLAGDETIPGSSLLPGHVQAYQEAVKSGIHRTV--HAGEVG--SAEVVKEAVD- 229
Query: 134 LMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMATGH 193
+L T R+GHG+ + A+ ++++ E+CP S+ + H V L
Sbjct: 230 -ILKTERLGHGYHTLEDQALYNRLRQENMHFEICPWSSYLTGAWKPDTEHAVIRLKNDQA 288
Query: 194 PMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEKNTFM 253
+++DDP +F + L D+ +G + + K+L +N+ K S L E EK +
Sbjct: 289 NYSLNTDDPLIFKST-LDTDYQMTKRDMGFTEEE---FKRLNINAAKSSFLPEDEKRELL 344
Query: 254 EIWKKRW 260
++ K +
Sbjct: 345 DLLYKAY 351
>gi|4502079 adenosine monophosphate deaminase 3 isoform 1A [Homo
sapiens]
Length = 776
Score = 45.8 bits (107), Expect = 4e-05
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 131 LDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMA 190
L + L I HG L K P ++ + IPI + P+SN L L + +P+ +
Sbjct: 605 LVSAFLTADNISHGLLLKKSPVLQYLYYLAQIPIAMSPLSNNSLFL--EYSKNPLREFLH 662
Query: 191 TGHPMVISSDDPAMFG-AKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEK 249
G + +S+DDP F K + Y + + K L ++A NS+ S L EK
Sbjct: 663 KGLHVSLSTDDPMQFHYTKEALMEEYAIAAQV--WKLSTCDLCEIARNSVLQSGLSHQEK 720
Query: 250 NTFM 253
F+
Sbjct: 721 QKFL 724
>gi|70906428 adenosine monophosphate deaminase 3 isoform 1C [Homo
sapiens]
Length = 774
Score = 45.8 bits (107), Expect = 4e-05
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 131 LDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMA 190
L + L I HG L K P ++ + IPI + P+SN L L + +P+ +
Sbjct: 603 LVSAFLTADNISHGLLLKKSPVLQYLYYLAQIPIAMSPLSNNSLFL--EYSKNPLREFLH 660
Query: 191 TGHPMVISSDDPAMFG-AKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEK 249
G + +S+DDP F K + Y + + K L ++A NS+ S L EK
Sbjct: 661 KGLHVSLSTDDPMQFHYTKEALMEEYAIAAQV--WKLSTCDLCEIARNSVLQSGLSHQEK 718
Query: 250 NTFM 253
F+
Sbjct: 719 QKFL 722
>gi|70906426 adenosine monophosphate deaminase 3 isoform 1B [Homo
sapiens]
Length = 767
Score = 45.8 bits (107), Expect = 4e-05
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 131 LDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMA 190
L + L I HG L K P ++ + IPI + P+SN L L + +P+ +
Sbjct: 596 LVSAFLTADNISHGLLLKKSPVLQYLYYLAQIPIAMSPLSNNSLFL--EYSKNPLREFLH 653
Query: 191 TGHPMVISSDDPAMFG-AKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEK 249
G + +S+DDP F K + Y + + K L ++A NS+ S L EK
Sbjct: 654 KGLHVSLSTDDPMQFHYTKEALMEEYAIAAQV--WKLSTCDLCEIARNSVLQSGLSHQEK 711
Query: 250 NTFM 253
F+
Sbjct: 712 QKFL 715
>gi|4557311 adenosine monophosphate deaminase 1 (isoform M) [Homo
sapiens]
Length = 747
Score = 37.7 bits (86), Expect = 0.011
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 141 IGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMATGHPMVISSD 200
I HG L K P ++ + IPI + P+SN L L + +P + G + +S+D
Sbjct: 592 ISHGLNLKKSPVLQYLFFLAQIPIAMSPLSNNSLFL--EYAKNPFLDFLQKGLMISLSTD 649
Query: 201 DPAMFG-AKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEKNTFM 253
DP F K + Y + + K + ++A NS+ + EK F+
Sbjct: 650 DPMQFHFTKEPLMEEYAIAAQV--FKLSTCDMCEVARNSVLQCGISHEEKVKFL 701
>gi|55925574 adenosine monophosphate deaminase 2 (isoform L) isoform
3 [Homo sapiens]
Length = 760
Score = 36.2 bits (82), Expect = 0.031
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 129 NILDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATL 188
+++ A ML I HG L K P ++ + I I + P+SN L L +P+
Sbjct: 577 HLVSAFML-AENISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFL--SYHRNPLPEY 633
Query: 189 MATGHPMVISSDDPAMF 205
++ G + +S+DDP F
Sbjct: 634 LSRGLMVSLSTDDPLQF 650
>gi|34147621 adenosine monophosphate deaminase 2 (isoform L) isoform
2 [Homo sapiens]
Length = 798
Score = 36.2 bits (82), Expect = 0.031
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 129 NILDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATL 188
+++ A ML I HG L K P ++ + I I + P+SN L L +P+
Sbjct: 615 HLVSAFML-AENISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFL--SYHRNPLPEY 671
Query: 189 MATGHPMVISSDDPAMF 205
++ G + +S+DDP F
Sbjct: 672 LSRGLMVSLSTDDPLQF 688
>gi|21264318 adenosine monophosphate deaminase 2 (isoform L) isoform
1 [Homo sapiens]
Length = 879
Score = 36.2 bits (82), Expect = 0.031
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 129 NILDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATL 188
+++ A ML I HG L K P ++ + I I + P+SN L L +P+
Sbjct: 696 HLVSAFML-AENISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFL--SYHRNPLPEY 752
Query: 189 MATGHPMVISSDDPAMF 205
++ G + +S+DDP F
Sbjct: 753 LSRGLMVSLSTDDPLQF 769
>gi|226693318 adenosine deaminase-like isoform 1 [Homo sapiens]
Length = 328
Score = 33.9 bits (76), Expect = 0.15
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Query: 140 RIGHGFALSKHPA----VRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMATGHPM 195
RIGHG L+ + + + IP+E+C SN + V H + HP
Sbjct: 202 RIGHGTFLNSGEGGSLDLVDFVRQHRIPLELCLTSNVKSQTVPSYDQHHFGFWYSIAHPS 261
Query: 196 VISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQ-----LAMNSIKYSTLLESEKN 250
VI +DD +F A LS ++ + A+ L Q L+ SI Y +S ++
Sbjct: 262 VICTDDKGVF-ATHLSQEYQ--------LAAETFNLTQSQVWDLSYESINYIFASDSTRS 312
Query: 251 TFMEIW 256
+ W
Sbjct: 313 ELRKKW 318
>gi|71902540 ataxia telangiectasia mutated isoform 1 [Homo sapiens]
Length = 3056
Score = 28.5 bits (62), Expect = 6.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 228 LRTLKQLAMNSIKYSTLLESEKNTFMEIWKKRW 260
LR L ++A+ K S L S+K+ +++W K W
Sbjct: 456 LRCLTEVALCQDKRSNLESSQKSDLLKLWNKIW 488
>gi|169218268 PREDICTED: similar to Serine-protein kinase ATM,
partial [Homo sapiens]
Length = 2934
Score = 28.5 bits (62), Expect = 6.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 228 LRTLKQLAMNSIKYSTLLESEKNTFMEIWKKRW 260
LR L ++A+ K S L S+K+ +++W K W
Sbjct: 334 LRCLTEVALCQDKRSNLESSQKSDLLKLWNKIW 366
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,520,598
Number of Sequences: 37866
Number of extensions: 367212
Number of successful extensions: 758
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 13
length of query: 270
length of database: 18,247,518
effective HSP length: 101
effective length of query: 169
effective length of database: 14,423,052
effective search space: 2437495788
effective search space used: 2437495788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.