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Search of human proteins with 28872734
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28872734 mitochondrial ribosomal protein L43 isoform a [Homo
sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28872734 mitochondrial ribosomal protein L43 isoform a [Homo ... 322 1e-88
gi|28872738 mitochondrial ribosomal protein L43 isoform d [Homo ... 315 8e-87
gi|28872732 mitochondrial ribosomal protein L43 isoform b [Homo ... 315 1e-86
gi|28872736 mitochondrial ribosomal protein L43 isoform c [Homo ... 315 1e-86
gi|4505355 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2... 32 0.18
gi|156564386 deltex 2 isoform b [Homo sapiens] 30 0.67
gi|156564384 deltex 2 isoform a [Homo sapiens] 30 0.67
gi|156564382 deltex 2 isoform a [Homo sapiens] 30 0.67
gi|156564380 deltex 2 isoform a [Homo sapiens] 30 0.67
gi|4502115 acyloxyacyl hydrolase precursor [Homo sapiens] 29 1.5
gi|115298645 mitogen-activated protein kinase kinase kinase 14 [... 27 5.6
gi|4505463 contactin associated protein 1 precursor [Homo sapiens] 27 5.6
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 27 5.6
gi|160333222 transmembrane protein 87A isoform 2 [Homo sapiens] 27 5.6
gi|31377765 transmembrane protein 87A isoform 1 [Homo sapiens] 27 5.6
gi|221219020 NYD-SP11 protein [Homo sapiens] 27 7.4
gi|66933005 calnexin precursor [Homo sapiens] 27 7.4
gi|10716563 calnexin precursor [Homo sapiens] 27 7.4
gi|169179422 PREDICTED: hypothetical protein [Homo sapiens] 27 9.6
gi|118026927 nudix (nucleoside diphosphate linked moiety X)-type... 27 9.6
>gi|28872734 mitochondrial ribosomal protein L43 isoform a [Homo
sapiens]
Length = 159
Score = 322 bits (824), Expect = 1e-88
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQVQAQ 159
TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQVQAQ
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQVQAQ 159
>gi|28872738 mitochondrial ribosomal protein L43 isoform d [Homo
sapiens]
Length = 235
Score = 315 bits (808), Expect = 8e-87
Identities = 156/159 (98%), Positives = 157/159 (98%)
Query: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQVQAQ 159
TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQ A+
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDAAE 159
>gi|28872732 mitochondrial ribosomal protein L43 isoform b [Homo
sapiens]
Length = 215
Score = 315 bits (806), Expect = 1e-86
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQ
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
>gi|28872736 mitochondrial ribosomal protein L43 isoform c [Homo
sapiens]
Length = 202
Score = 315 bits (806), Expect = 1e-86
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQ
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
>gi|4505355 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2,
8kDa [Homo sapiens]
Length = 99
Score = 32.3 bits (72), Expect = 0.18
Identities = 14/79 (17%), Positives = 38/79 (48%)
Query: 26 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85
L+ + + + S+G R+F+E+ ++ + NP + I + P++ A Y G
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQET 75
Query: 86 EESIHCKSVEEISTLVQKL 104
++ S ++++ ++ +
Sbjct: 76 NVPLNNFSADQVTRALENV 94
>gi|156564386 deltex 2 isoform b [Homo sapiens]
Length = 575
Score = 30.4 bits (67), Expect = 0.67
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 75 VVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRK--PFHTDNPSI------ 126
++A Y NG ++ S+ C S + I Q ++V+R + P H D +I
Sbjct: 407 LLAMYCNGN-KDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSI 465
Query: 127 ----QGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
QG HP KP T RG PR+ P AQ
Sbjct: 466 PHGIQGPEHPNPGKPFTARGF-PRQCYLPDNAQ 497
>gi|156564384 deltex 2 isoform a [Homo sapiens]
Length = 622
Score = 30.4 bits (67), Expect = 0.67
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 75 VVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRK--PFHTDNPSI------ 126
++A Y NG ++ S+ C S + I Q ++V+R + P H D +I
Sbjct: 454 LLAMYCNGN-KDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSI 512
Query: 127 ----QGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
QG HP KP T RG PR+ P AQ
Sbjct: 513 PHGIQGPEHPNPGKPFTARGF-PRQCYLPDNAQ 544
>gi|156564382 deltex 2 isoform a [Homo sapiens]
Length = 622
Score = 30.4 bits (67), Expect = 0.67
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 75 VVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRK--PFHTDNPSI------ 126
++A Y NG ++ S+ C S + I Q ++V+R + P H D +I
Sbjct: 454 LLAMYCNGN-KDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSI 512
Query: 127 ----QGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
QG HP KP T RG PR+ P AQ
Sbjct: 513 PHGIQGPEHPNPGKPFTARGF-PRQCYLPDNAQ 544
>gi|156564380 deltex 2 isoform a [Homo sapiens]
Length = 622
Score = 30.4 bits (67), Expect = 0.67
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 75 VVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRK--PFHTDNPSI------ 126
++A Y NG ++ S+ C S + I Q ++V+R + P H D +I
Sbjct: 454 LLAMYCNGN-KDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSI 512
Query: 127 ----QGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
QG HP KP T RG PR+ P AQ
Sbjct: 513 PHGIQGPEHPNPGKPFTARGF-PRQCYLPDNAQ 544
>gi|4502115 acyloxyacyl hydrolase precursor [Homo sapiens]
Length = 575
Score = 29.3 bits (64), Expect = 1.5
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 8/37 (21%)
Query: 32 SVSRDGASSRGAREFVE----REVIDFARRNPGVVIY 64
++SR+GASSR ++F+E +V+D+ P +VIY
Sbjct: 336 NISRNGASSRNLKKFIESLSRNKVLDY----PAIVIY 368
>gi|115298645 mitogen-activated protein kinase kinase kinase 14
[Homo sapiens]
Length = 947
Score = 27.3 bits (59), Expect = 5.6
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 69 PCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFHTDNPSIQG 128
P C P + A+ + +R+E IH S E+ V + Q G ++ P+ + +
Sbjct: 620 PSCAP-LTAQAIQEGLRKEPIHRVSAAELGGKVNRALQQVG----GLKSPWRGEYKEPR- 673
Query: 129 QWHPFTNKPTTFRGL--RPREVQDPAPAQVQAQ 159
HP N+ + L +PRE+ AP A+
Sbjct: 674 --HPPPNQANYHQTLHAQPRELSPRAPGPRPAE 704
>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
Length = 1384
Score = 27.3 bits (59), Expect = 5.6
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 114 RIRKPFHTDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQVQA 158
R + +HT+ P ++HP + P G P +V P A QA
Sbjct: 1310 RYKGSYHTNEPKAAHEYHPGSKPPLPTSG--PAQVPTPTAAPNQA 1352
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 27.3 bits (59), Expect = 5.6
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 13 SVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARR---NPGVVIYVNSRP 69
S H GL Y L+ DG+S A V+ R N + Y+
Sbjct: 581 SAEHAGLSEYGCMLEIKDVRTFPDGSSVVDAIGISRFRVLSHRHRDGYNTADIEYLEDEK 640
Query: 70 CCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQ--SGLDVIRIRKPFHTDNPS 125
P EY A +S+H +SV ++L ++ +Q S V+ R+P NPS
Sbjct: 641 VEGP----EYEELAALHDSVHQQSVSWFASLQDRMKEQILSHFGVMPDREPEPQSNPS 694
>gi|160333222 transmembrane protein 87A isoform 2 [Homo sapiens]
Length = 181
Score = 27.3 bits (59), Expect = 5.6
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 57 RNPGVVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGL 110
RN + + + PC + + YL A I+ EE+ ++KL ++ GL
Sbjct: 61 RNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGL 114
>gi|31377765 transmembrane protein 87A isoform 1 [Homo sapiens]
Length = 555
Score = 27.3 bits (59), Expect = 5.6
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 57 RNPGVVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGL 110
RN + + + PC + + YL A I+ EE+ ++KL ++ GL
Sbjct: 61 RNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGL 114
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 26.9 bits (58), Expect = 7.4
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 74 RVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFHTDNPSIQGQW 130
R V + +EE + VEE++TL +K+ Q G V+ R P D +W
Sbjct: 1411 RKVGKIKREMTKEERDMSEEVEEMATLEEKVVKQEGKLVMIERTPSWQDWKKAWDEW 1467
>gi|66933005 calnexin precursor [Homo sapiens]
Length = 592
Score = 26.9 bits (58), Expect = 7.4
Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 122 DNPSIQGQWHPFTNKPTTFRGL-RPREVQDP 151
DNP+ +G+W P +++G+ +PR++ +P
Sbjct: 375 DNPNYKGKWKPPMIDNPSYQGIWKPRKIPNP 405
>gi|10716563 calnexin precursor [Homo sapiens]
Length = 592
Score = 26.9 bits (58), Expect = 7.4
Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 122 DNPSIQGQWHPFTNKPTTFRGL-RPREVQDP 151
DNP+ +G+W P +++G+ +PR++ +P
Sbjct: 375 DNPNYKGKWKPPMIDNPSYQGIWKPRKIPNP 405
>gi|169179422 PREDICTED: hypothetical protein [Homo sapiens]
Length = 645
Score = 26.6 bits (57), Expect = 9.6
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 114 RIRKPFHTDNPSIQ-----GQWHPFTNKPTTFRGLRPR 146
R +KP H P++Q W F+N P F RP+
Sbjct: 45 RSQKPGHRPPPALQIWDEGRAWRSFSNPPDLFTAYRPQ 82
>gi|118026927 nudix (nucleoside diphosphate linked moiety X)-type
motif 18 [Homo sapiens]
Length = 323
Score = 26.6 bits (57), Expect = 9.6
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 76 VAEYLNGAVREES-IHCK-----SVEEISTLVQK---LADQSGLDVIRIRKPFHTDNPSI 126
+ E L V+EE+ +HC+ SVEE + LA +G +++ K D S+
Sbjct: 84 IVEALQREVKEEAGLHCEPETLLSVEERGPSWVRFVFLARPTG-GILKTSK--EADAESL 140
Query: 127 QGQWHPFTNKPTTFR 141
Q W+P T+ PT R
Sbjct: 141 QAAWYPRTSLPTPLR 155
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,033,876
Number of Sequences: 37866
Number of extensions: 245325
Number of successful extensions: 579
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 23
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.