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Search of human proteins with 27886637
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27886637 CD8b antigen isoform 4 precursor [Homo sapiens]
(213 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27886637 CD8b antigen isoform 4 precursor [Homo sapiens] 432 e-121
gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens] 416 e-117
gi|27886631 CD8b antigen isoform 1 precursor [Homo sapiens] 339 9e-94
gi|4826667 CD8b antigen isoform 5 precursor [Homo sapiens] 339 9e-94
gi|27886635 CD8b antigen isoform 3 precursor [Homo sapiens] 339 9e-94
gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens] 42 3e-04
gi|239753212 PREDICTED: similar to hCG1686089 [Homo sapiens] 42 5e-04
gi|239749464 PREDICTED: hypothetical protein XP_002347049 [Homo ... 42 5e-04
gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens] 41 9e-04
gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens] 39 0.003
gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens] 39 0.003
gi|169217835 PREDICTED: similar to hCG2038921 [Homo sapiens] 39 0.004
gi|169207803 PREDICTED: similar to hCG2038921 [Homo sapiens] 39 0.004
gi|239750758 PREDICTED: hypothetical protein XP_002347493 [Homo ... 38 0.007
gi|51317373 netrin-G1 ligand [Homo sapiens] 37 0.012
gi|239749273 PREDICTED: similar to hCG2039484 [Homo sapiens] 37 0.016
gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens] 36 0.028
gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo ... 36 0.028
gi|239754744 PREDICTED: similar to hCG2043257 [Homo sapiens] 35 0.036
gi|27886642 CD8 antigen alpha polypeptide isoform 2 precursor [H... 35 0.047
gi|209529703 signal-regulatory protein beta 1 isoform 3 precurso... 35 0.047
gi|144953876 signal-regulatory protein beta 1 isoform 1 precurso... 35 0.062
gi|169207532 PREDICTED: similar to hCG2042717 [Homo sapiens] 35 0.062
gi|239756207 PREDICTED: similar to pre-B lymphocyte gene 2 [Homo... 35 0.062
gi|239750745 PREDICTED: hypothetical protein XP_002347495 [Homo ... 35 0.062
gi|144953878 signal-regulatory protein beta 1 isoform 2 precurso... 35 0.062
gi|94538339 signal-regulatory protein gamma isoform 3 precursor ... 35 0.062
gi|94538335 signal-regulatory protein gamma isoform 1 precursor ... 35 0.062
gi|30179915 paired immunoglobulin-like type 2 receptor beta isof... 35 0.062
gi|30179911 paired immunoglobulin-like type 2 receptor beta isof... 35 0.062
>gi|27886637 CD8b antigen isoform 4 precursor [Homo sapiens]
Length = 213
Score = 432 bits (1111), Expect = e-121
Identities = 213/213 (100%), Positives = 213/213 (100%)
Query: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
Sbjct: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
Query: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
Sbjct: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
Query: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGRRRRARLRFMKQPQG 180
SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGRRRRARLRFMKQPQG
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGRRRRARLRFMKQPQG 180
Query: 181 EGISGTFVPQCLHGYYSNTTTSQKLLNPWILKT 213
EGISGTFVPQCLHGYYSNTTTSQKLLNPWILKT
Sbjct: 181 EGISGTFVPQCLHGYYSNTTTSQKLLNPWILKT 213
>gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens]
Length = 243
Score = 416 bits (1070), Expect = e-117
Identities = 213/243 (87%), Positives = 213/243 (87%), Gaps = 30/243 (12%)
Query: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
Sbjct: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
Query: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
Sbjct: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
Query: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG--------------- 165
SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
Query: 166 ---------------RRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI 210
RRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
Sbjct: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI 240
Query: 211 LKT 213
LKT
Sbjct: 241 LKT 243
>gi|27886631 CD8b antigen isoform 1 precursor [Homo sapiens]
Length = 246
Score = 339 bits (870), Expect = 9e-94
Identities = 177/207 (85%), Positives = 177/207 (85%), Gaps = 30/207 (14%)
Query: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
Sbjct: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
Query: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
Sbjct: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
Query: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG--------------- 165
SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
Query: 166 ---------------RRRRARLRFMKQ 177
RRRRARLRFMKQ
Sbjct: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207
>gi|4826667 CD8b antigen isoform 5 precursor [Homo sapiens]
Length = 210
Score = 339 bits (870), Expect = 9e-94
Identities = 177/207 (85%), Positives = 177/207 (85%), Gaps = 30/207 (14%)
Query: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
Sbjct: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
Query: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
Sbjct: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
Query: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG--------------- 165
SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
Query: 166 ---------------RRRRARLRFMKQ 177
RRRRARLRFMKQ
Sbjct: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207
>gi|27886635 CD8b antigen isoform 3 precursor [Homo sapiens]
Length = 221
Score = 339 bits (870), Expect = 9e-94
Identities = 177/207 (85%), Positives = 177/207 (85%), Gaps = 30/207 (14%)
Query: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
Sbjct: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
Query: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
Sbjct: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
Query: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG--------------- 165
SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
Query: 166 ---------------RRRRARLRFMKQ 177
RRRRARLRFMKQ
Sbjct: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207
>gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens]
Length = 157
Score = 42.4 bits (98), Expect = 3e-04
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 17 HGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQR--QAPSSDSHHEFLALWD 74
HG V+ Q+PA + + + LSC A S+S+ + W +Q+ QAP L
Sbjct: 24 HGEIVMTQSPATLSLSPGERATLSCRASQSVSSSYLSWYQQKPGQAP------RLLIYGA 77
Query: 75 SAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFC 116
S + T + + + F L ++S++PED +Y+C
Sbjct: 78 STRAT-----GIPARFSGSGSGTDFTLTISSLQPEDFAVYYC 114
>gi|239753212 PREDICTED: similar to hCG1686089 [Homo sapiens]
Length = 152
Score = 41.6 bits (96), Expect = 5e-04
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 4 RLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQ--AP 61
+L LL L G VL Q+PA + + + LSC A S+S+ + W +Q+ AP
Sbjct: 6 QLLFLLLLWLPDTTGEIVLTQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQKPGLAP 65
Query: 62 S---SDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMI 118
D+ + D G+ G + F L ++ ++PED +Y+C
Sbjct: 66 RLLIYDASSRATGIPDRFSGSGSGTD--------------FTLTISRLEPEDFAVYYCQQ 111
Query: 119 VGS 121
GS
Sbjct: 112 YGS 114
>gi|239749464 PREDICTED: hypothetical protein XP_002347049 [Homo
sapiens]
Length = 152
Score = 41.6 bits (96), Expect = 5e-04
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 4 RLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQ--AP 61
+L LL L G VL Q+PA + + + LSC A S+S+ + W +Q+ AP
Sbjct: 6 QLLFLLLLWLPDTTGEIVLTQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQKPGLAP 65
Query: 62 S---SDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMI 118
D+ + D G+ G + F L ++ ++PED +Y+C
Sbjct: 66 RLLIYDASSRATGIPDRFSGSGSGTD--------------FTLTISRLEPEDFAVYYCQQ 111
Query: 119 VGS 121
GS
Sbjct: 112 YGS 114
>gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens]
Length = 151
Score = 40.8 bits (94), Expect = 9e-04
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 4 RLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQR--QAP 61
+L LL L G V+ Q+PA + + + LSC A S+S+ + W +Q+ QAP
Sbjct: 6 QLLFLLLLWLPDTTGEIVMTQSPATLSLSPGERATLSCRASQSVSSSYLSWYQQKPGQAP 65
Query: 62 SSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFC 116
L S + T + + + F L ++S++PED +Y+C
Sbjct: 66 ------RLLIYGASTRAT-----GIPARFSGSGSGTDFTLTISSLQPEDFAVYYC 109
>gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]
Length = 230
Score = 38.9 bits (89), Expect = 0.003
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 20 SVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGT 79
S + Q+P +I + V + C + N+ W ++ D + + L L KG
Sbjct: 45 SRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM-----DENPQQLKL---EKGR 96
Query: 80 IHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM--IVGSPELTFGKGTQLSVVDF 137
+ EE + E +A L + ++ ED+GIYFC + E+ G GT+L V+ F
Sbjct: 97 M--EESQNESLAT--------LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 146
Query: 138 LPTTAQPTKKSTLK 151
T AQ +++TLK
Sbjct: 147 -STLAQLKQRNTLK 159
>gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens]
Length = 229
Score = 38.9 bits (89), Expect = 0.003
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 20 SVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGT 79
S + Q+P +I + V + C + N+ W ++ D + + L L KG
Sbjct: 44 SRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM-----DENPQQLKL---EKGR 95
Query: 80 IHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM--IVGSPELTFGKGTQLSVVDF 137
+ EE + E +A L + ++ ED+GIYFC + E+ G GT+L V+ F
Sbjct: 96 M--EESQNESLAT--------LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 145
Query: 138 LPTTAQPTKKSTLK 151
T AQ +++TLK
Sbjct: 146 -STLAQLKQRNTLK 158
>gi|169217835 PREDICTED: similar to hCG2038921 [Homo sapiens]
Length = 120
Score = 38.5 bits (88), Expect = 0.004
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 7 LLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAK-ISLSNMRIYWLRQRQAPSSDS 65
LLL A T H L Q+ A +K + V +SC+ + ++ ++W++Q AP
Sbjct: 8 LLLVAAATGTHAEVQLVQSGAEVK-KPGATVKISCKVSGYTFTDYYMHWVQQ--APGKGL 64
Query: 66 HHEFLALWDSAKG-TIHGEEVEQEKIAVFRDASR--FILNLTSVKPEDSGIYFC 116
E++ L D G TI+ E+ Q ++ + D S + L+S++ ED+ +Y+C
Sbjct: 65 --EWMGLVDPEDGETIYAEKF-QGRVTITADTSTDTAYMELSSLRSEDTAVYYC 115
>gi|169207803 PREDICTED: similar to hCG2038921 [Homo sapiens]
Length = 120
Score = 38.5 bits (88), Expect = 0.004
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 7 LLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAK-ISLSNMRIYWLRQRQAPSSDS 65
LLL A T H L Q+ A +K + V +SC+ + ++ ++W++Q AP
Sbjct: 8 LLLVAAATGTHAEVQLVQSGAEVK-KPGATVKISCKVSGYTFTDYYMHWVQQ--APGKGL 64
Query: 66 HHEFLALWDSAKG-TIHGEEVEQEKIAVFRDASR--FILNLTSVKPEDSGIYFC 116
E++ L D G TI+ E+ Q ++ + D S + L+S++ ED+ +Y+C
Sbjct: 65 --EWMGLVDPEDGETIYAEKF-QGRVTITADTSTDTAYMELSSLRSEDTAVYYC 115
>gi|239750758 PREDICTED: hypothetical protein XP_002347493 [Homo
sapiens]
Length = 120
Score = 37.7 bits (86), Expect = 0.007
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 7 LLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAK-ISLSNMRIYWLRQRQAPSSDS 65
L L A T H L Q+ A +K + V +SC+ +L+ + ++W+RQ AP
Sbjct: 8 LFLVAAATGTHAQVQLVQSGAEVK-KPGASVKVSCKVSGYTLTELSMHWVRQ--APGKGL 64
Query: 66 HHEFLALWDSAKG-TIHGEEVEQEKIAVFRDASR--FILNLTSVKPEDSGIYFC 116
E++ +D G TI+ ++ Q ++ + D S + L+S++ ED+ +Y+C
Sbjct: 65 --EWMGGFDPEDGETIYAQKF-QGRVTMTEDTSTDTAYMELSSLRSEDTAVYYC 115
>gi|51317373 netrin-G1 ligand [Homo sapiens]
Length = 640
Score = 37.0 bits (84), Expect = 0.012
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 24/110 (21%)
Query: 21 VLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGTI 80
V+ + PA + V L C A SL+++ W + GT+
Sbjct: 355 VIVEPPADLNVTEGMAAELKCRASTSLTSVS---------------------WITPNGTV 393
Query: 81 HGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGT 130
+ +IAV D + LN T+V +D+G+Y CM+ S T T
Sbjct: 394 MTHGAYKVRIAVLSDGT---LNFTNVTVQDTGMYTCMVSNSVGNTTASAT 440
>gi|239749273 PREDICTED: similar to hCG2039484 [Homo sapiens]
Length = 235
Score = 36.6 bits (83), Expect = 0.016
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 19 NSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKG 78
N+ + QTP + ++T + + L C ++ M YW RQ H + +AKG
Sbjct: 34 NAGVTQTPKFRVLKTGQSMTLLCAQDMNHEYM--YWYRQDPGMGLRLIHYSVGEGTTAKG 91
Query: 79 TI-HGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFC 116
+ G V + K F+L L S P + +YFC
Sbjct: 92 EVPDGYNVSRLK------KQNFLLGLESAAPSQTSVYFC 124
>gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens]
Length = 651
Score = 35.8 bits (81), Expect = 0.028
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 24 QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGE 83
Q A++ V +M L+C L I W R P + TI
Sbjct: 519 QPEAFVSVAAGEMATLNCTVTSLLPVGPIQWFRGA-CPGQKLIYSPKRCHSPRVTTIS-- 575
Query: 84 EVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM-----IVGSPELTFGKGTQLSV 134
+Q K R+++ + + ++S+ ED+G Y+CM I + E+ G GTQ+SV
Sbjct: 576 --DQRK----RNSTDYSIRISSITLEDAGTYYCMKLRRAIPANVEIKSGPGTQMSV 625
>gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo
sapiens]
Length = 651
Score = 35.8 bits (81), Expect = 0.028
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 24 QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGE 83
Q A++ V +M L+C L I W R P + TI
Sbjct: 519 QPEAFVSVAAGEMATLNCTVTSLLPVGPIQWFRGA-CPGQKLIYSPKRCHSPRVTTIS-- 575
Query: 84 EVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM-----IVGSPELTFGKGTQLSV 134
+Q K R+++ + + ++S+ ED+G Y+CM I + E+ G GTQ+SV
Sbjct: 576 --DQRK----RNSTDYSIRISSITLEDAGTYYCMKLRRAIPANVEIKSGPGTQMSV 625
>gi|239754744 PREDICTED: similar to hCG2043257 [Homo sapiens]
Length = 132
Score = 35.4 bits (80), Expect = 0.036
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 22 LQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIH 81
+ QTP Y+ + T K + L C ++ + ++YW +Q H + + KG +
Sbjct: 23 IYQTPRYLVIGTGKKITLECSQ--TMGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLS 80
Query: 82 GEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFC 116
E ++ R F L L S +P + Y C
Sbjct: 81 SEST----VSRIR-TEHFPLTLESARPSHTSQYLC 110
>gi|27886642 CD8 antigen alpha polypeptide isoform 2 precursor [Homo
sapiens]
Length = 198
Score = 35.0 bits (79), Expect = 0.047
Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 29/164 (17%)
Query: 37 VMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDA 96
V L C+ +S WL Q P + L+ S E ++ ++ + R
Sbjct: 39 VELKCQVLLSNPTSGCSWLFQ---PRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLG 95
Query: 97 SRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVDFLPTTA----QPTKKSTL-- 150
F+L L+ + E+ G YFC + + + F + + PTT PT T+
Sbjct: 96 DTFVLTLSDFRRENEGYYFCSALSNSIMYFSHFVPV-FLPAKPTTTPAPRPPTPAPTIAS 154
Query: 151 -------------------KKRVCRLPRPETQKGRRRRARLRFM 175
++RVC+ PRP + G + R++
Sbjct: 155 QPLSLRPEACRPAAGGAGNRRRVCKCPRPVVKSGDKPSLSARYV 198
>gi|209529703 signal-regulatory protein beta 1 isoform 3 precursor
[Homo sapiens]
Length = 398
Score = 35.0 bits (79), Expect = 0.047
Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 18/154 (11%)
Query: 5 LWLLLAAQLTVLHGNSVLQ--QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPS 62
L LL +LT + G LQ Q I V + L C + I W R P
Sbjct: 16 LMTLLLGRLTGVAGEEELQVIQPDKSISVAAGESATLHCTVTSLIPVGPIQWFRGA-GPG 74
Query: 63 SDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIV--G 120
+ +++ +G H V R+ F + ++++ P D+G Y+C+ G
Sbjct: 75 RE------LIYNQKEG--HFPRVTTVSDLTKRNNMDFSIRISNITPADAGTYYCVKFRKG 126
Query: 121 SP---ELTFGKGTQLSV--VDFLPTTAQPTKKST 149
SP E G GT+LSV P + P ++T
Sbjct: 127 SPDHVEFKSGAGTELSVRAKPSAPVVSGPAARAT 160
>gi|144953876 signal-regulatory protein beta 1 isoform 1 precursor
[Homo sapiens]
Length = 398
Score = 34.7 bits (78), Expect = 0.062
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 16/137 (11%)
Query: 5 LWLLLAAQLTVLHGNSVLQ--QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPS 62
L LL +LT + G LQ Q + V + L C + I W R A
Sbjct: 16 LMTLLLGRLTGVAGEDELQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGR 75
Query: 63 SDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIV--G 120
+++ +G H V R+ F ++++++ P D+G Y+C+ G
Sbjct: 76 E-------LIYNQKEG--HFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKG 126
Query: 121 SP---ELTFGKGTQLSV 134
SP E G GT+LSV
Sbjct: 127 SPDDVEFKSGAGTELSV 143
>gi|169207532 PREDICTED: similar to hCG2042717 [Homo sapiens]
Length = 218
Score = 34.7 bits (78), Expect = 0.062
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 24/122 (19%)
Query: 6 WLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAK-ISLSNMRIYWLRQRQAP--- 61
W+ L A L + L ++ + VQ + + LSC A + S+ ++W+RQ
Sbjct: 52 WVFLVALLRGVQCQVQLVESGGGV-VQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLE 110
Query: 62 -----SSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASR--FILNLTSVKPEDSGIY 114
S D +++ A DS KG + + RD S+ L + S++ ED+ +Y
Sbjct: 111 WVAVISYDGSNKYYA--DSVKG----------RFTISRDNSKNTLYLQMNSLRAEDTAVY 158
Query: 115 FC 116
+C
Sbjct: 159 YC 160
>gi|239756207 PREDICTED: similar to pre-B lymphocyte gene 2 [Homo
sapiens]
Length = 120
Score = 34.7 bits (78), Expect = 0.062
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 7 LLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAK-ISLSNMRIYWLRQRQAPSSDS 65
L L A T H L Q+ A +K + V +SC+A + ++ I W+RQ ++
Sbjct: 8 LFLVAAATSAHSQVQLVQSGAEVK-KPGASVKVSCKASGYTFTSYDINWVRQ----ATGQ 62
Query: 66 HHEFLALWDSAKGTIHGEEVEQEKIAVFRDAS--RFILNLTSVKPEDSGIYFC 116
E++ + G + Q ++ + R+ S + L+S++ ED+ +Y+C
Sbjct: 63 GLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYC 115
>gi|239750745 PREDICTED: hypothetical protein XP_002347495 [Homo
sapiens]
Length = 120
Score = 34.7 bits (78), Expect = 0.062
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 7 LLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAK-ISLSNMRIYWLRQRQAPSSDS 65
L L A T H L Q+ A +K + V +SC+A + ++ I W+RQ ++
Sbjct: 8 LFLVAAATSAHSQVQLVQSGAEVK-KPGASVKVSCKASGYTFTSYDINWVRQ----ATGQ 62
Query: 66 HHEFLALWDSAKGTIHGEEVEQEKIAVFRDAS--RFILNLTSVKPEDSGIYFC 116
E++ + G + Q ++ + R+ S + L+S++ ED+ +Y+C
Sbjct: 63 GLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYC 115
>gi|144953878 signal-regulatory protein beta 1 isoform 2 precursor
[Homo sapiens]
Length = 181
Score = 34.7 bits (78), Expect = 0.062
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 16/137 (11%)
Query: 5 LWLLLAAQLTVLHGNSVLQ--QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPS 62
L LL +LT + G LQ Q + V + L C + I W R A
Sbjct: 16 LMTLLLGRLTGVAGEDELQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGR 75
Query: 63 SDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIV--G 120
+++ +G H V R+ F ++++++ P D+G Y+C+ G
Sbjct: 76 E-------LIYNQKEG--HFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKG 126
Query: 121 SP---ELTFGKGTQLSV 134
SP E G GT+LSV
Sbjct: 127 SPDDVEFKSGAGTELSV 143
>gi|94538339 signal-regulatory protein gamma isoform 3 precursor
[Homo sapiens]
Length = 276
Score = 34.7 bits (78), Expect = 0.062
Identities = 55/230 (23%), Positives = 87/230 (37%), Gaps = 39/230 (16%)
Query: 3 PRLWLLLAAQLTVLHGNSVLQ--QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
P L L L LT + G LQ Q + V K L C L + W R
Sbjct: 13 PFLLLTLLLGLTEVAGEEELQMIQPEKLLLVTVGKTATLHCTVTSLLPVGPVLWFRG-VG 71
Query: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIV- 119
P + +++ +G H V R+ F + ++S+ P D G Y+C+
Sbjct: 72 PGRE------LIYNQKEG--HFPRVTTVSDLTKRNNMDFSIRISSITPADVGTYYCVKFR 123
Query: 120 -GSP---ELTFGKGTQ--LSVVDFLPTTAQPTKKSTLKKRV---CR----LPRPETQKGR 166
GSP E G GT+ L P P ++T + V C PR T K
Sbjct: 124 KGSPENVEFKSGPGTEMALGAKPSAPVVLGPAARTTPEHTVSFTCESHGFSPRDITLKWF 183
Query: 167 RRRARLRFMK---QPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWILKT 213
+ L + P G+ ++ YS +T++ +L+PW +++
Sbjct: 184 KNGNELSDFQTNVDPTGQSVA-----------YSIRSTARVVLDPWDVRS 222
>gi|94538335 signal-regulatory protein gamma isoform 1 precursor
[Homo sapiens]
Length = 387
Score = 34.7 bits (78), Expect = 0.062
Identities = 55/230 (23%), Positives = 87/230 (37%), Gaps = 39/230 (16%)
Query: 3 PRLWLLLAAQLTVLHGNSVLQ--QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
P L L L LT + G LQ Q + V K L C L + W R
Sbjct: 13 PFLLLTLLLGLTEVAGEEELQMIQPEKLLLVTVGKTATLHCTVTSLLPVGPVLWFRG-VG 71
Query: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIV- 119
P + +++ +G H V R+ F + ++S+ P D G Y+C+
Sbjct: 72 PGRE------LIYNQKEG--HFPRVTTVSDLTKRNNMDFSIRISSITPADVGTYYCVKFR 123
Query: 120 -GSP---ELTFGKGTQ--LSVVDFLPTTAQPTKKSTLKKRV---CR----LPRPETQKGR 166
GSP E G GT+ L P P ++T + V C PR T K
Sbjct: 124 KGSPENVEFKSGPGTEMALGAKPSAPVVLGPAARTTPEHTVSFTCESHGFSPRDITLKWF 183
Query: 167 RRRARLRFMK---QPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWILKT 213
+ L + P G+ ++ YS +T++ +L+PW +++
Sbjct: 184 KNGNELSDFQTNVDPTGQSVA-----------YSIRSTARVVLDPWDVRS 222
>gi|30179915 paired immunoglobulin-like type 2 receptor beta isoform
a precursor [Homo sapiens]
Length = 227
Score = 34.7 bits (78), Expect = 0.062
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 49 NMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKP 108
N+RI W R H + + + +IH + V + + L +++++
Sbjct: 66 NVRISWRR--------GHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRK 117
Query: 109 EDSGIYFCMI------VGSPELTFGKGTQLSVVDFLPTTA--QPTKKSTL 150
ED +YFC + G +L KGT+L++ + TT +P+ +T+
Sbjct: 118 EDQSVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTI 167
>gi|30179911 paired immunoglobulin-like type 2 receptor beta isoform
a precursor [Homo sapiens]
Length = 227
Score = 34.7 bits (78), Expect = 0.062
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 49 NMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKP 108
N+RI W R H + + + +IH + V + + L +++++
Sbjct: 66 NVRISWRR--------GHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRK 117
Query: 109 EDSGIYFCMI------VGSPELTFGKGTQLSVVDFLPTTA--QPTKKSTL 150
ED +YFC + G +L KGT+L++ + TT +P+ +T+
Sbjct: 118 EDQSVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTI 167
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,346,415
Number of Sequences: 37866
Number of extensions: 374149
Number of successful extensions: 1451
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 1328
Number of HSP's gapped (non-prelim): 214
length of query: 213
length of database: 18,247,518
effective HSP length: 98
effective length of query: 115
effective length of database: 14,536,650
effective search space: 1671714750
effective search space used: 1671714750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.