Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 27886582
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27886582 mitochondrial ribosomal protein L39 isoform a [Homo
sapiens]
(338 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27886582 mitochondrial ribosomal protein L39 isoform a [Homo ... 691 0.0
gi|27886570 mitochondrial ribosomal protein L39 isoform b [Homo ... 662 0.0
gi|38570111 threonyl-tRNA synthetase-like 2 [Homo sapiens] 84 1e-16
gi|38202255 threonyl-tRNA synthetase [Homo sapiens] 79 4e-15
gi|20070344 threonyl-tRNA synthetase 2, mitochondrial [Homo sapi... 61 1e-09
gi|148839466 kalirin, RhoGEF kinase isoform 1 [Homo sapiens] 31 1.4
gi|4504335 kalirin, RhoGEF kinase isoform 2 [Homo sapiens] 31 1.4
gi|149944578 HEAT repeat containing 7A isoform 2 [Homo sapiens] 31 1.4
gi|149944469 HEAT repeat containing 7A isoform 2 [Homo sapiens] 31 1.4
gi|150010654 HEAT repeat containing 7A isoform 1 [Homo sapiens] 31 1.4
gi|236463300 hypothetical protein LOC79846 isoform 2 [Homo sapiens] 30 2.4
gi|236463164 hypothetical protein LOC79846 isoform 1 [Homo sapiens] 30 2.4
gi|28195390 tripartite motif-containing 42 [Homo sapiens] 30 2.4
gi|14327896 cyclin B1 [Homo sapiens] 30 3.1
gi|17402909 tripartite motif protein TRIM29 [Homo sapiens] 30 4.0
gi|60302879 shugoshin-like 1 isoform C1 [Homo sapiens] 30 4.0
gi|24308448 shugoshin-like 1 isoform C2 [Homo sapiens] 30 4.0
>gi|27886582 mitochondrial ribosomal protein L39 isoform a [Homo
sapiens]
Length = 338
Score = 691 bits (1784), Expect = 0.0
Identities = 338/338 (100%), Positives = 338/338 (100%)
Query: 1 MEALAMGSRALRLWLVAPGGGIKWRFIATSPASQLSPTELTEMRNDLFNKEKARQLSLTP 60
MEALAMGSRALRLWLVAPGGGIKWRFIATSPASQLSPTELTEMRNDLFNKEKARQLSLTP
Sbjct: 1 MEALAMGSRALRLWLVAPGGGIKWRFIATSPASQLSPTELTEMRNDLFNKEKARQLSLTP 60
Query: 61 RTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLT 120
RTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLT
Sbjct: 61 RTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLT 120
Query: 121 KSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIERAFKDEYMVNLVRAPEVPVISGAFC 180
KSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIERAFKDEYMVNLVRAPEVPVISGAFC
Sbjct: 121 KSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIERAFKDEYMVNLVRAPEVPVISGAFC 180
Query: 181 YDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQHSKYKVDFI 240
YDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQHSKYKVDFI
Sbjct: 181 YDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQHSKYKVDFI 240
Query: 241 EEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSICFQYEVSAVHNLQPTQPSLIRRFQGV 300
EEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSICFQYEVSAVHNLQPTQPSLIRRFQGV
Sbjct: 241 EEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSICFQYEVSAVHNLQPTQPSLIRRFQGV 300
Query: 301 SLPVHLRAHFTIWDKLLERSRKMVTEDQSKATEECTST 338
SLPVHLRAHFTIWDKLLERSRKMVTEDQSKATEECTST
Sbjct: 301 SLPVHLRAHFTIWDKLLERSRKMVTEDQSKATEECTST 338
>gi|27886570 mitochondrial ribosomal protein L39 isoform b [Homo
sapiens]
Length = 353
Score = 662 bits (1708), Expect = 0.0
Identities = 323/323 (100%), Positives = 323/323 (100%)
Query: 1 MEALAMGSRALRLWLVAPGGGIKWRFIATSPASQLSPTELTEMRNDLFNKEKARQLSLTP 60
MEALAMGSRALRLWLVAPGGGIKWRFIATSPASQLSPTELTEMRNDLFNKEKARQLSLTP
Sbjct: 1 MEALAMGSRALRLWLVAPGGGIKWRFIATSPASQLSPTELTEMRNDLFNKEKARQLSLTP 60
Query: 61 RTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLT 120
RTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLT
Sbjct: 61 RTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLT 120
Query: 121 KSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIERAFKDEYMVNLVRAPEVPVISGAFC 180
KSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIERAFKDEYMVNLVRAPEVPVISGAFC
Sbjct: 121 KSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIERAFKDEYMVNLVRAPEVPVISGAFC 180
Query: 181 YDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQHSKYKVDFI 240
YDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQHSKYKVDFI
Sbjct: 181 YDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQHSKYKVDFI 240
Query: 241 EEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSICFQYEVSAVHNLQPTQPSLIRRFQGV 300
EEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSICFQYEVSAVHNLQPTQPSLIRRFQGV
Sbjct: 241 EEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSICFQYEVSAVHNLQPTQPSLIRRFQGV 300
Query: 301 SLPVHLRAHFTIWDKLLERSRKM 323
SLPVHLRAHFTIWDKLLERSRKM
Sbjct: 301 SLPVHLRAHFTIWDKLLERSRKM 323
>gi|38570111 threonyl-tRNA synthetase-like 2 [Homo sapiens]
Length = 802
Score = 84.3 bits (207), Expect = 1e-16
Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 22/239 (9%)
Query: 86 STPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLTKSCEIKFLTFKDCDPGEVNKAYWRS 145
+TPY A +S+ +++A V+G+ WD+ +PL ++ LTF D E YW S
Sbjct: 179 TTPYQVAAEISQELAESTVIAKVNGELWDLDRPLEGDSSLELLTF---DNEEAQAVYWHS 235
Query: 146 CAMMMGCVIERAFKDEYMVNLVRAPEVPVISGAFCYDVVLDSKLDEWMPTKENLRSFTKD 205
A ++G +E + P I F YD+ ++ + + L +
Sbjct: 236 SAHILGEAMELYYGGHLCYG-------PPIENGFYYDMFIEDR----AVSSTELSALENI 284
Query: 206 AHALIYKDLPFETLEVEAKVALEIFQHSKYKVDFIEEKASQNPERIVKLHRIGDFIDVSE 265
A+I + PFE LEV ++ LE+F+++K+K + EK + ++R G ID+ +
Sbjct: 285 CKAIIKEKQPFERLEVSKEILLEMFKYNKFKCRILNEKVN---TATTTVYRCGPLIDLCK 341
Query: 266 GPLIPRTSICFQYEV---SAVHNLQPTQPSLIRRFQGVSLPVHLRAHFTIWDKLLERSR 321
GP + T ++ S+ + + ++R G+S P + W+K E ++
Sbjct: 342 GPHVRHTGKIKTIKIFKNSSTYWEGNPEMETLQRIYGISFPDN--KMMRDWEKFQEEAK 398
>gi|38202255 threonyl-tRNA synthetase [Homo sapiens]
Length = 723
Score = 79.3 bits (194), Expect = 4e-15
Identities = 69/279 (24%), Positives = 120/279 (43%), Gaps = 28/279 (10%)
Query: 33 SQLSP-TELTEMRNDLFNKEKARQLSLTPRTEKIEVKHVGKTDP-GTVFVMNKNISTPYS 90
++L+P E R +++N KA S+ + + K + T P G +TPY
Sbjct: 45 AELNPWPEYIYTRLEMYNILKAEHDSILAEKAEKDSKPIKVTLPDGKQVDAESWKTTPYQ 104
Query: 91 CAMHLSEWYCRKSILALVDGQPWDMYKPLTKSCEIKFLTFKDCDPGEVNKAYWRSCAMMM 150
A +S+ +++A V+ WD+ +PL + C ++ L F+D E YW S A +M
Sbjct: 105 IACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFED---EEAQAVYWHSSAHIM 161
Query: 151 GCVIERAFKDEYMVNLVRAPEVPVISGAFCYDVVLDSKLDEWMPTKENLRSFTKDAHALI 210
G +ER + P I F YD+ L+E + + S +I
Sbjct: 162 GEAMERVYGGCLCYG-------PPIENGFYYDMY----LEEGGVSSNDFSSLEALCKKII 210
Query: 211 YKDLPFETLEVEAKVALEIFQHSKYKVDFIEEKASQNPERIVKLHRIGDFIDVSEGPLIP 270
+ FE LEV+ + L +F+++K+K + EK + + +R G ID+ GP +
Sbjct: 211 KEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTTTV---YRCGPLIDLCRGPHVR 267
Query: 271 RTSICFQYEVSAVHNLQPT------QPSLIRRFQGVSLP 303
T + + +H T ++R G+S P
Sbjct: 268 HTG---KIKALKIHKNSSTYWEGKADMETLQRIYGISFP 303
>gi|20070344 threonyl-tRNA synthetase 2, mitochondrial [Homo
sapiens]
Length = 718
Score = 61.2 bits (147), Expect = 1e-09
Identities = 64/262 (24%), Positives = 102/262 (38%), Gaps = 35/262 (13%)
Query: 50 KEKARQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVD 109
K A PRT KI + K D N +TPY A +S ++ A V+
Sbjct: 48 KRLASMAQKEPRTIKISLPGGQKID---AVAWN---TTPYQLARQISSTLADTAVAAQVN 101
Query: 110 GQPWDMYKPLTKSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIERAFKDEYMVNLVRA 169
G+P+D+ +PL +++FLTF D E +W S ++G E+ L R
Sbjct: 102 GEPYDLERPLETDSDLRFLTF---DSPEGKAVFWHSSTHVLGAAAEQFLG----AVLCRG 154
Query: 170 PEVPVISGAFCYDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEI 229
P F +D L E L + L PF LE ++
Sbjct: 155 PSTEY---GFYHDFFLGK---ERTIRGSELPVLERICQELTAAARPFRRLEASRDQLRQL 208
Query: 230 FQHSKYKVDFIEEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSICFQYEVSAVHNLQPT 289
F+ + +K+ IEEK + P V + G +D+ +GP + T ++ + L +
Sbjct: 209 FKDNPFKLHLIEEKVT-GPTATV--YGCGTLVDLCQGPHLRHTG-----QIGGLKLLSNS 260
Query: 290 Q--------PSLIRRFQGVSLP 303
P ++R G+S P
Sbjct: 261 SSLWRSSGAPETLQRVSGISFP 282
>gi|148839466 kalirin, RhoGEF kinase isoform 1 [Homo sapiens]
Length = 2986
Score = 31.2 bits (69), Expect = 1.4
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 35/187 (18%)
Query: 96 SEWYCRKSILALVD--GQPWDMYKPLTKSCEIKFLTFKDCDPGEVNKA-------YWRSC 146
SE C++ ++D G WD+ KPL K T ++ P E++ A +W+
Sbjct: 86 SEDVCKRGFTVIIDMRGSKWDLIKPLLK-------TLQEAFPAEIHVALIIKPDNFWQKQ 138
Query: 147 AMMMGC---VIERAFKD-EYMVNLVRAPEVPVISGAFCYDVVLDSKLDEWMPTKENLRSF 202
G + E + E + LV ++ +D LD +EW+ + +L F
Sbjct: 139 KTNFGSSKFIFETSMVSVEGLTKLVDPSQLTEE-----FDGSLDYNHEEWIELRLSLEEF 193
Query: 203 TKDAHALI--YKDLPFETLEVEAKVALE-----IFQHSKYKVDFIE---EKASQNPERIV 252
A L+ +DL E V +E I +H++ K ++ E+ + +R++
Sbjct: 194 FNSAVHLLSRLEDLQEMLARKEFPVDVEGSRRLIDEHTQLKKKVLKAPVEELDREGQRLL 253
Query: 253 KLHRIGD 259
+ R D
Sbjct: 254 QCIRCSD 260
>gi|4504335 kalirin, RhoGEF kinase isoform 2 [Homo sapiens]
Length = 1663
Score = 31.2 bits (69), Expect = 1.4
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 35/187 (18%)
Query: 96 SEWYCRKSILALVD--GQPWDMYKPLTKSCEIKFLTFKDCDPGEVNKA-------YWRSC 146
SE C++ ++D G WD+ KPL K T ++ P E++ A +W+
Sbjct: 86 SEDVCKRGFTVIIDMRGSKWDLIKPLLK-------TLQEAFPAEIHVALIIKPDNFWQKQ 138
Query: 147 AMMMGC---VIERAFKD-EYMVNLVRAPEVPVISGAFCYDVVLDSKLDEWMPTKENLRSF 202
G + E + E + LV ++ +D LD +EW+ + +L F
Sbjct: 139 KTNFGSSKFIFETSMVSVEGLTKLVDPSQLTEE-----FDGSLDYNHEEWIELRLSLEEF 193
Query: 203 TKDAHALI--YKDLPFETLEVEAKVALE-----IFQHSKYKVDFIE---EKASQNPERIV 252
A L+ +DL E V +E I +H++ K ++ E+ + +R++
Sbjct: 194 FNSAVHLLSRLEDLQEMLARKEFPVDVEGSRRLIDEHTQLKKKVLKAPVEELDREGQRLL 253
Query: 253 KLHRIGD 259
+ R D
Sbjct: 254 QCIRCSD 260
>gi|149944578 HEAT repeat containing 7A isoform 2 [Homo sapiens]
Length = 422
Score = 31.2 bits (69), Expect = 1.4
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 161 EYMVNLVRAPEVPVISGAFCYDV--VLDSKLDEWMPTKE-NLRSFTKDAHALIYKDLPFE 217
EY+ NL RAP+ V AF D+ D +W+ ++E LR +A + LP E
Sbjct: 198 EYLANLDRAPDPTVRKDAFATDIFSAYDVLFHQWLQSREAKLRLAVVEALGPMSHLLPSE 257
Query: 218 TLE 220
LE
Sbjct: 258 RLE 260
>gi|149944469 HEAT repeat containing 7A isoform 2 [Homo sapiens]
Length = 422
Score = 31.2 bits (69), Expect = 1.4
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 161 EYMVNLVRAPEVPVISGAFCYDV--VLDSKLDEWMPTKE-NLRSFTKDAHALIYKDLPFE 217
EY+ NL RAP+ V AF D+ D +W+ ++E LR +A + LP E
Sbjct: 198 EYLANLDRAPDPTVRKDAFATDIFSAYDVLFHQWLQSREAKLRLAVVEALGPMSHLLPSE 257
Query: 218 TLE 220
LE
Sbjct: 258 RLE 260
>gi|150010654 HEAT repeat containing 7A isoform 1 [Homo sapiens]
Length = 1641
Score = 31.2 bits (69), Expect = 1.4
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 161 EYMVNLVRAPEVPVISGAFCYDV--VLDSKLDEWMPTKE-NLRSFTKDAHALIYKDLPFE 217
EY+ NL RAP+ V AF D+ D +W+ ++E LR +A + LP E
Sbjct: 198 EYLANLDRAPDPTVRKDAFATDIFSAYDVLFHQWLQSREAKLRLAVVEALGPMSHLLPSE 257
Query: 218 TLE 220
LE
Sbjct: 258 RLE 260
>gi|236463300 hypothetical protein LOC79846 isoform 2 [Homo sapiens]
Length = 923
Score = 30.4 bits (67), Expect = 2.4
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 166 LVRAPEVPVISGAFCYDVVLDSKLDEWMPTK--------------ENLRSFTKDAHALIY 211
+ + PE P+I F D++L + +E L+ + ++
Sbjct: 301 IAQNPEAPMIECGFTKDLILFATFNEVKSQNLLVKGLKLSNSYEDFELKKLLFNVIVILC 360
Query: 212 KDLPFETLEVEAKVALEIFQHSK--YKVDFIEEKASQNPERIVKLHRIGDFIDVS 264
KDLP L ++ KV L +F + K K I+ A+Q+ E ++LH I V+
Sbjct: 361 KDLPTVQLLIDGKVILALFTYVKKPEKQKIIDWSAAQHEE--LQLHAIATLSSVA 413
>gi|236463164 hypothetical protein LOC79846 isoform 1 [Homo sapiens]
Length = 941
Score = 30.4 bits (67), Expect = 2.4
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 166 LVRAPEVPVISGAFCYDVVLDSKLDEWMPTK--------------ENLRSFTKDAHALIY 211
+ + PE P+I F D++L + +E L+ + ++
Sbjct: 319 IAQNPEAPMIECGFTKDLILFATFNEVKSQNLLVKGLKLSNSYEDFELKKLLFNVIVILC 378
Query: 212 KDLPFETLEVEAKVALEIFQHSK--YKVDFIEEKASQNPERIVKLHRIGDFIDVS 264
KDLP L ++ KV L +F + K K I+ A+Q+ E ++LH I V+
Sbjct: 379 KDLPTVQLLIDGKVILALFTYVKKPEKQKIIDWSAAQHEE--LQLHAIATLSSVA 431
>gi|28195390 tripartite motif-containing 42 [Homo sapiens]
Length = 723
Score = 30.4 bits (67), Expect = 2.4
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 25/99 (25%)
Query: 217 ETLEVEAKVALEIFQHSKYKVDFIEE--KASQNPERIVKLHRIG----DFIDVSEGPLIP 270
E L+ +VA Q +K VD IE+ + + P+ ++LH I DF+++S
Sbjct: 432 EALKETGQVAF--LQSAKILVDQIEDGIQTTYRPDPQLRLHSINYVPLDFVELS------ 483
Query: 271 RTSICFQYEVSAVHNLQPTQPSLIRRFQGVSLPVHLRAH 309
SA+H L PT P +R G SLP H
Sbjct: 484 ----------SAIHELFPTGPKKVRS-SGDSLPSPYPVH 511
>gi|14327896 cyclin B1 [Homo sapiens]
Length = 433
Score = 30.0 bits (66), Expect = 3.1
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 165 NLVRAPEVPVISGAFCYDV-VLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEA 223
++V P + +GAFC + +LD+ EW PT ++ S+T+++ + + L + V
Sbjct: 335 DMVHFPPSQIAAGAFCLALKILDN--GEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQ 392
Query: 224 KVALEIFQHSKY 235
+ + +KY
Sbjct: 393 GLTKHMTVKNKY 404
>gi|17402909 tripartite motif protein TRIM29 [Homo sapiens]
Length = 588
Score = 29.6 bits (65), Expect = 4.0
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 183 VVLDSKLDEWMPTKENLRSFTKDAHALI---YKDL--PFETLEVEAKVALE-----IFQH 232
+ ++ + ++W K+ ++SFT + A++ ++DL E + E + ALE
Sbjct: 283 IEIEDEAEKWQKEKDRIKSFTTNEKAILEQNFRDLVRDLEKQKEEVRAALEQREQDAVDQ 342
Query: 233 SKYKVDFIEEKAS---QNPERIVKLHRIGDFI 261
K +D ++E+A ++ + +LH I D +
Sbjct: 343 VKVIMDALDERAKVLHEDKQTREQLHSISDSV 374
>gi|60302879 shugoshin-like 1 isoform C1 [Homo sapiens]
Length = 258
Score = 29.6 bits (65), Expect = 4.0
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 18 PGGGIKWRFIATSPASQLSP-TELTEMRN-DLFNKEKARQLSLTPRTEK 64
PG G ++ AT P +Q SP L ++ N L+ K R+LSL+P+ K
Sbjct: 149 PGQGESFQIEATPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNK 197
>gi|24308448 shugoshin-like 1 isoform C2 [Homo sapiens]
Length = 292
Score = 29.6 bits (65), Expect = 4.0
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 18 PGGGIKWRFIATSPASQLSP-TELTEMRN-DLFNKEKARQLSLTPRTEK 64
PG G ++ AT P +Q SP L ++ N L+ K R+LSL+P+ K
Sbjct: 149 PGQGESFQIEATPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNK 197
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,183,635
Number of Sequences: 37866
Number of extensions: 573196
Number of successful extensions: 1149
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1140
Number of HSP's gapped (non-prelim): 17
length of query: 338
length of database: 18,247,518
effective HSP length: 103
effective length of query: 235
effective length of database: 14,347,320
effective search space: 3371620200
effective search space used: 3371620200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.