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Search of human proteins with 27734891
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27734891 hypothetical protein LOC286464 [Homo sapiens]
(502 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27734891 hypothetical protein LOC286464 [Homo sapiens] 1037 0.0
gi|212286181 parvin, gamma [Homo sapiens] 32 1.0
gi|212286179 parvin, gamma [Homo sapiens] 32 1.0
gi|11545879 parvin, gamma [Homo sapiens] 32 1.0
gi|190194374 hypothetical protein LOC144811 [Homo sapiens] 32 1.3
gi|190194372 hypothetical protein LOC144811 [Homo sapiens] 32 1.3
gi|115298678 complement component 3 precursor [Homo sapiens] 32 1.8
gi|169218213 PREDICTED: similar to complement component C3, part... 32 1.8
gi|239758102 PREDICTED: similar to protein-L-isoaspartate (D-asp... 30 6.7
gi|239757983 PREDICTED: similar to protein-L-isoaspartate (D-asp... 30 6.7
gi|239752574 PREDICTED: hypothetical protein XP_002348296 [Homo ... 30 6.7
gi|239747889 PREDICTED: hypothetical protein XP_002346467 [Homo ... 30 6.7
gi|155722998 solute carrier family 4, sodium bicarbonate transpo... 30 6.7
gi|190360566 protein-L-isoaspartate (D-aspartate) O-methyltransf... 30 6.7
gi|203097003 Rho GTPase activating protein 21 [Homo sapiens] 29 8.7
>gi|27734891 hypothetical protein LOC286464 [Homo sapiens]
Length = 502
Score = 1037 bits (2681), Expect = 0.0
Identities = 502/502 (100%), Positives = 502/502 (100%)
Query: 1 MAIHLDKQNIILKNDKDEYLKKTRDGVLPPYQDAKPPSPASIKKTYTTSKFNDAEPAKGN 60
MAIHLDKQNIILKNDKDEYLKKTRDGVLPPYQDAKPPSPASIKKTYTTSKFNDAEPAKGN
Sbjct: 1 MAIHLDKQNIILKNDKDEYLKKTRDGVLPPYQDAKPPSPASIKKTYTTSKFNDAEPAKGN 60
Query: 61 LFIGVEVLPENLHLDESETSEEDHGSLEKEKYEQFLSLEEGTKAHYFFEKVVNAAQTWFS 120
LFIGVEVLPENLHLDESETSEEDHGSLEKEKYEQFLSLEEGTKAHYFFEKVVNAAQTWFS
Sbjct: 61 LFIGVEVLPENLHLDESETSEEDHGSLEKEKYEQFLSLEEGTKAHYFFEKVVNAAQTWFS 120
Query: 121 LFGWPEGPHSFSIPETIRRDVYKMQFYSSTSPPQKFSRQNDFSKYNKTIYDVLLHLSGKM 180
LFGWPEGPHSFSIPETIRRDVYKMQFYSSTSPPQKFSRQNDFSKYNKTIYDVLLHLSGKM
Sbjct: 121 LFGWPEGPHSFSIPETIRRDVYKMQFYSSTSPPQKFSRQNDFSKYNKTIYDVLLHLSGKM 180
Query: 181 PPGINSSQSLPVDNHEKRVIQLHLQHSSLLDFLNAQGGCISHVLPEFLLEPEDYKRWIEI 240
PPGINSSQSLPVDNHEKRVIQLHLQHSSLLDFLNAQGGCISHVLPEFLLEPEDYKRWIEI
Sbjct: 181 PPGINSSQSLPVDNHEKRVIQLHLQHSSLLDFLNAQGGCISHVLPEFLLEPEDYKRWIEI 240
Query: 241 MSSTNTMPVSSCTPKKKCSIVIEMSKFEAWSKRAWTDVFLQIYKVLVLSRVVPYCSNNMP 300
MSSTNTMPVSSCTPKKKCSIVIEMSKFEAWSKRAWTDVFLQIYKVLVLSRVVPYCSNNMP
Sbjct: 241 MSSTNTMPVSSCTPKKKCSIVIEMSKFEAWSKRAWTDVFLQIYKVLVLSRVVPYCSNNMP 300
Query: 301 PICVQNTPKVNPCFASSNIYSDSERILLSWMNINYENTRHVIWKNCHKDVIPSERWIVNF 360
PICVQNTPKVNPCFASSNIYSDSERILLSWMNINYENTRHVIWKNCHKDVIPSERWIVNF
Sbjct: 301 PICVQNTPKVNPCFASSNIYSDSERILLSWMNINYENTRHVIWKNCHKDVIPSERWIVNF 360
Query: 361 DKDLSDGLVFATQLGAYCPFLIESHFINMYTRPKSPEEYLHNCLIIVNTLYEIDFDVEIQ 420
DKDLSDGLVFATQLGAYCPFLIESHFINMYTRPKSPEEYLHNCLIIVNTLYEIDFDVEIQ
Sbjct: 361 DKDLSDGLVFATQLGAYCPFLIESHFINMYTRPKSPEEYLHNCLIIVNTLYEIDFDVEIQ 420
Query: 421 VCLRVFPKEMDAGVSGLRKEDMPSVWVVTIRLAVAVARTKRQKKGDIQFACFFVCLFFFI 480
VCLRVFPKEMDAGVSGLRKEDMPSVWVVTIRLAVAVARTKRQKKGDIQFACFFVCLFFFI
Sbjct: 421 VCLRVFPKEMDAGVSGLRKEDMPSVWVVTIRLAVAVARTKRQKKGDIQFACFFVCLFFFI 480
Query: 481 FVVISFSLWSRMHFFLLLPLDI 502
FVVISFSLWSRMHFFLLLPLDI
Sbjct: 481 FVVISFSLWSRMHFFLLLPLDI 502
>gi|212286181 parvin, gamma [Homo sapiens]
Length = 331
Score = 32.3 bits (72), Expect = 1.0
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 357 IVNFDKDLSDGLVFATQLGAYCPFLIESHFINMYTRPKSPEEYLHNCLIIVNTL 410
+ N D +DG++ +G F + H Y P SP E LHN + + L
Sbjct: 231 VQNLDTQFADGVILLLLIGQLEGFFL--HLKEFYLTPNSPAEMLHNVTLALELL 282
>gi|212286179 parvin, gamma [Homo sapiens]
Length = 331
Score = 32.3 bits (72), Expect = 1.0
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 357 IVNFDKDLSDGLVFATQLGAYCPFLIESHFINMYTRPKSPEEYLHNCLIIVNTL 410
+ N D +DG++ +G F + H Y P SP E LHN + + L
Sbjct: 231 VQNLDTQFADGVILLLLIGQLEGFFL--HLKEFYLTPNSPAEMLHNVTLALELL 282
>gi|11545879 parvin, gamma [Homo sapiens]
Length = 331
Score = 32.3 bits (72), Expect = 1.0
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 357 IVNFDKDLSDGLVFATQLGAYCPFLIESHFINMYTRPKSPEEYLHNCLIIVNTL 410
+ N D +DG++ +G F + H Y P SP E LHN + + L
Sbjct: 231 VQNLDTQFADGVILLLLIGQLEGFFL--HLKEFYLTPNSPAEMLHNVTLALELL 282
>gi|190194374 hypothetical protein LOC144811 [Homo sapiens]
Length = 430
Score = 32.0 bits (71), Expect = 1.3
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 297 NNMPPICVQNTPKVNPCFASSNIYSDSERILLSW-----MNINYENTRHVIWKNCHKDVI 351
+N+ P CVQ NPC + RILL NI +N + +CH D
Sbjct: 354 HNLHPACVQLFDSPNPCID----IRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPD-- 407
Query: 352 PSERWIVNFDKDLSDGLVFATQLG 375
F + DGL F TQ+G
Sbjct: 408 -------KFFSHVRDGLNFGTQIG 424
>gi|190194372 hypothetical protein LOC144811 [Homo sapiens]
Length = 430
Score = 32.0 bits (71), Expect = 1.3
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 297 NNMPPICVQNTPKVNPCFASSNIYSDSERILLSW-----MNINYENTRHVIWKNCHKDVI 351
+N+ P CVQ NPC + RILL NI +N + +CH D
Sbjct: 354 HNLHPACVQLFDSPNPCID----IRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPD-- 407
Query: 352 PSERWIVNFDKDLSDGLVFATQLG 375
F + DGL F TQ+G
Sbjct: 408 -------KFFSHVRDGLNFGTQIG 424
>gi|115298678 complement component 3 precursor [Homo sapiens]
Length = 1663
Score = 31.6 bits (70), Expect = 1.8
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 128 PHSFSIPETIRRDVYKMQFYSSTSPPQKFSRQNDFSKYNKTIYDVLLHLSGK 179
P S+ IPE + +K++ Y SP Q FS + + +Y ++V++ + K
Sbjct: 190 PLSWDIPELVNMGQWKIRAYYENSPQQVFSTEFEVKEYVLPSFEVIVEPTEK 241
>gi|169218213 PREDICTED: similar to complement component C3, partial
[Homo sapiens]
Length = 1295
Score = 31.6 bits (70), Expect = 1.8
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 128 PHSFSIPETIRRDVYKMQFYSSTSPPQKFSRQNDFSKYNKTIYDVLLHLSGK 179
P S+ IPE + +K++ Y SP Q FS + + +Y ++V++ + K
Sbjct: 190 PLSWDIPELVNMGQWKIRAYYENSPQQVFSTEFEVKEYVLPSFEVIVEPTEK 241
>gi|239758102 PREDICTED: similar to protein-L-isoaspartate
(D-aspartate) O-methyltransferase domain containing 1
[Homo sapiens]
Length = 118
Score = 29.6 bits (65), Expect = 6.7
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 61 LFIGVEVLPENLHLDESETSEEDHGSLEKEKYEQFLSLEE 100
+F+G +++P+ L +E E EED+ E++ + + + EE
Sbjct: 50 VFVGNQLIPQPLDSEEDEKMEEDNKEEEEKDHSEAMKPEE 89
>gi|239757983 PREDICTED: similar to protein-L-isoaspartate
(D-aspartate) O-methyltransferase domain containing 1
[Homo sapiens]
Length = 132
Score = 29.6 bits (65), Expect = 6.7
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 61 LFIGVEVLPENLHLDESETSEEDHGSLEKEKYEQFLSLEE 100
+F+G +++P+ L +E E EED+ E++ + + + EE
Sbjct: 64 VFVGNQLIPQPLDSEEDEEMEEDNKEEEEKDHSEAMKPEE 103
>gi|239752574 PREDICTED: hypothetical protein XP_002348296 [Homo
sapiens]
Length = 164
Score = 29.6 bits (65), Expect = 6.7
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 61 LFIGVEVLPENLHLDESETSEEDHGSLEKEKYEQFLSLEE 100
+F+G +++P+ L +E E EED+ E++ + + + EE
Sbjct: 96 VFVGNQLIPQPLDSEEDEKMEEDNKEEEEKDHSEAMKPEE 135
>gi|239747889 PREDICTED: hypothetical protein XP_002346467 [Homo
sapiens]
Length = 132
Score = 29.6 bits (65), Expect = 6.7
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 61 LFIGVEVLPENLHLDESETSEEDHGSLEKEKYEQFLSLEE 100
+F+G +++P+ L +E E EED+ E++ + + + EE
Sbjct: 64 VFVGNQLIPQPLDSEEDEEMEEDNKEEEEKDHSEAMKPEE 103
>gi|155722998 solute carrier family 4, sodium bicarbonate
transporter-like, member 10 [Homo sapiens]
Length = 1088
Score = 29.6 bits (65), Expect = 6.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 145 QFYSSTSPPQKFSRQNDFSKYNKTI--YDVLLHLSGKMPPGINSSQSL 190
Q S S P +ND S+ N T+ V LH K+PPG +S L
Sbjct: 258 QVVSPQSAPACVENKNDVSRENSTVDFSKVDLHFMKKIPPGAEASNIL 305
>gi|190360566 protein-L-isoaspartate (D-aspartate)
O-methyltransferase domain containing 1 [Homo sapiens]
Length = 357
Score = 29.6 bits (65), Expect = 6.7
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 61 LFIGVEVLPENLHLDESETSEEDHGSLEKEKYEQFLSLEE 100
+F+G +++P+ L +E E EED+ E++ + + + EE
Sbjct: 289 VFVGNQLIPQPLDSEEDEKMEEDNKEEEEKDHNEAMKPEE 328
>gi|203097003 Rho GTPase activating protein 21 [Homo sapiens]
Length = 1958
Score = 29.3 bits (64), Expect = 8.7
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 20 LKKTRDGVLPPYQDAKPPSPASIKKTYTTSKFNDAEPAKGNLFIGVEVLPENLHLDESET 79
L + V PP DA+P S K+Y + E AK + F V L + + + +S+
Sbjct: 856 LSHDHESVGPPSLDAQPNSKTERSKSYDEGLDDYREDAKLS-FKHVSSL-KGIKIADSQK 913
Query: 80 SEEDHGSLEKEKYEQF 95
S ED GS + E F
Sbjct: 914 SSEDSGSRKDSSSEVF 929
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,871,053
Number of Sequences: 37866
Number of extensions: 952217
Number of successful extensions: 2435
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2425
Number of HSP's gapped (non-prelim): 17
length of query: 502
length of database: 18,247,518
effective HSP length: 107
effective length of query: 395
effective length of database: 14,195,856
effective search space: 5607363120
effective search space used: 5607363120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.