Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CXorf59 Sequence: fasta or formatted (502aa) NCBI GI: 27734891
Description:

hypothetical protein LOC286464

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         19           2
 C cysteine            2.4         12           1
 D aspartate           5.2         26           1
 E glutamate           6.6         33           2
 F phenylalanine       6.4         32           3
 G glycine             3.2         16           2
 H histidine           3.0         15           1
 I isoleucine          6.8         34           2
 K lysine              7.4         37           3
 L leucine             9.0         45           3
 M methionine          2.4         12           1
 N asparagine          5.0         25           2
 P proline             6.2         31           2
 Q glutamine           3.4         17           1
 R arginine            3.6         18           2
 S serine              9.0         45           2
 T threonine           4.2         21           2
 V valine              7.2         36           2
 W tryptophan          2.0         10           1
 Y tyrosine            3.6         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC286464 
PARVG                 0.007   parvin, gamma 
PARVG                 0.007   parvin, gamma 
PARVG                 0.007   parvin, gamma 
C13orf31              0.007   hypothetical protein LOC144811 
C13orf31              0.007   hypothetical protein LOC144811 
C3                    0.007   complement component 3 precursor 
LOC100133511          0.007   PREDICTED: similar to complement component C3, part...
LOC100291960          0.005   PREDICTED: similar to protein-L-isoaspartate (D-asp...
LOC100291612          0.005   PREDICTED: similar to protein-L-isoaspartate (D-asp...
LOC100291082          0.005   PREDICTED: hypothetical protein XP_002348296 
LOC100290997          0.005   PREDICTED: hypothetical protein XP_002346467 
SLC4A10               0.005   solute carrier family 4, sodium bicarbonate transpo...
PCMTD1                0.005   protein-L-isoaspartate (D-aspartate) O-methyltransf...
ARHGAP21              0.004   Rho GTPase activating protein 21 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press