Guide to the Human Genome
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Name: ABTB1 Sequence: fasta or formatted (453aa) NCBI GI: 25777626
Description:

ankyrin repeat and BTB (POZ) domain containing 1 isoform 3

Referenced in:

Ankyrin Family

Other entries for this name:
alt prot [336aa] ankyrin repeat and BTB (POZ) domain containing 1 isoform 1
alt prot [478aa] ankyrin repeat and BTB (POZ) domain containing 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         42           3
 C cysteine            4.9         22           1
 D aspartate           7.5         34           2
 E glutamate           7.5         34           2
 F phenylalanine       4.2         19           2
 G glycine             5.3         24           2
 H histidine           2.6         12           1
 I isoleucine          2.6         12           1
 K lysine              3.5         16           1
 L leucine            12.1         55           2
 M methionine          1.5          7           1
 N asparagine          1.1          5           1
 P proline             4.9         22           3
 Q glutamine           2.6         12           2
 R arginine            7.3         33           3
 S serine              5.5         25           2
 T threonine           3.8         17           1
 V valine              8.2         37           3
 W tryptophan          1.5          7           1
 Y tyrosine            4.0         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin repeat and BTB (POZ) domain containing 1 iso... 
ABTB1                 0.959   ankyrin repeat and BTB (POZ) domain containing 1 iso...
ABTB1                 0.725   ankyrin repeat and BTB (POZ) domain containing 1 iso...
KLHL24                0.047   DRE1 protein 
KLHL22                0.046   kelch-like 
SPOP                  0.045   speckle-type POZ protein 
SPOP                  0.045   speckle-type POZ protein 
SPOP                  0.045   speckle-type POZ protein 
SPOP                  0.045   speckle-type POZ protein 
SPOP                  0.045   speckle-type POZ protein 
SPOP                  0.045   speckle-type POZ protein 
BTBD8                 0.044   BTB (POZ) domain containing 8 
KLHL11                0.044   kelch-like 11 
KLHL10                0.041   kelch-like 10 
KLHL23                0.041   kelch-like 23 
BTBD9                 0.041   BTB (POZ) domain containing 9 isoform a 
BTBD9                 0.041   BTB (POZ) domain containing 9 isoform a 
IBTK                  0.039   inhibitor of Bruton's tyrosine kinase 
KLHL21                0.038   kelch-like 21 
LOC149478             0.037   hypothetical protein LOC149478 
KLHL32                0.037   kelch-like 32 
SPOPL                 0.037   speckle-type POZ protein-like 
KLHL26                0.037   kelch-like 26 
KBTBD5                0.036   kelch repeat and BTB (POZ) domain containing 5 [Homo...
KEAP1                 0.035   kelch-like ECH-associated protein 1 
KEAP1                 0.035   kelch-like ECH-associated protein 1 
KBTBD4                0.035   kelch repeat and BTB (POZ) domain containing 4 isof...
KBTBD4                0.035   kelch repeat and BTB (POZ) domain containing 4 isof...
KBTBD8                0.034   T-cell activation kelch repeat protein 
KLHL6                 0.034   kelch-like 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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