Guide to the Human Genome
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Name: ABTB1 Sequence: fasta or formatted (478aa) NCBI GI: 25777624
Description:

ankyrin repeat and BTB (POZ) domain containing 1 isoform 2

Referenced in:

Ankyrin Family

Other entries for this name:
alt prot [336aa] ankyrin repeat and BTB (POZ) domain containing 1 isoform 1
alt prot [453aa] ankyrin repeat and BTB (POZ) domain containing 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         42           3
 C cysteine            4.4         21           1
 D aspartate           8.4         40           2
 E glutamate           7.1         34           2
 F phenylalanine       4.2         20           2
 G glycine             5.2         25           2
 H histidine           2.5         12           1
 I isoleucine          2.5         12           1
 K lysine              3.8         18           1
 L leucine            12.3         59           2
 M methionine          1.5          7           1
 N asparagine          1.3          6           1
 P proline             4.8         23           3
 Q glutamine           2.7         13           2
 R arginine            7.7         37           3
 S serine              5.4         26           1
 T threonine           3.6         17           1
 V valine              8.8         42           3
 W tryptophan          1.0          5           1
 Y tyrosine            4.0         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin repeat and BTB (POZ) domain containing 1 iso... 
ABTB1                 0.916   ankyrin repeat and BTB (POZ) domain containing 1 iso...
ABTB1                 0.692   ankyrin repeat and BTB (POZ) domain containing 1 iso...
KLHL24                0.045   DRE1 protein 
KLHL22                0.044   kelch-like 
SPOP                  0.043   speckle-type POZ protein 
SPOP                  0.043   speckle-type POZ protein 
SPOP                  0.043   speckle-type POZ protein 
SPOP                  0.043   speckle-type POZ protein 
SPOP                  0.043   speckle-type POZ protein 
SPOP                  0.043   speckle-type POZ protein 
BTBD8                 0.042   BTB (POZ) domain containing 8 
KLHL11                0.042   kelch-like 11 
KLHL10                0.039   kelch-like 10 
KLHL23                0.039   kelch-like 23 
BTBD9                 0.039   BTB (POZ) domain containing 9 isoform a 
BTBD9                 0.039   BTB (POZ) domain containing 9 isoform a 
IBTK                  0.038   inhibitor of Bruton's tyrosine kinase 
KLHL21                0.037   kelch-like 21 
LOC149478             0.036   hypothetical protein LOC149478 
KLHL32                0.036   kelch-like 32 
SPOPL                 0.036   speckle-type POZ protein-like 
KLHL26                0.036   kelch-like 26 
KBTBD5                0.035   kelch repeat and BTB (POZ) domain containing 5 [Homo...
KEAP1                 0.034   kelch-like ECH-associated protein 1 
KEAP1                 0.034   kelch-like ECH-associated protein 1 
KBTBD4                0.034   kelch repeat and BTB (POZ) domain containing 4 isof...
KBTBD4                0.034   kelch repeat and BTB (POZ) domain containing 4 isof...
KBTBD8                0.032   T-cell activation kelch repeat protein 
KLHL6                 0.032   kelch-like 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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