Guide to the Human Genome
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Name: PADI6 Sequence: fasta or formatted (694aa) NCBI GI: 117414158
Description:

peptidylarginine deiminase type 6

Referenced in:

Additional Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         39           2
 C cysteine            3.3         23           2
 D aspartate           6.1         42           2
 E glutamate           6.8         47           2
 F phenylalanine       4.0         28           1
 G glycine             5.6         39           1
 H histidine           1.4         10           1
 I isoleucine          5.5         38           2
 K lysine              6.9         48           3
 L leucine            10.5         73           4
 M methionine          2.3         16           1
 N asparagine          2.9         20           1
 P proline             6.1         42           2
 Q glutamine           4.8         33           2
 R arginine            3.0         21           2
 S serine              7.5         52           2
 T threonine           5.2         36           2
 V valine              7.5         52           2
 W tryptophan          1.4         10           2
 Y tyrosine            3.6         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peptidylarginine deiminase type 6 
PADI4                 0.410   peptidyl arginine deiminase, type IV 
PADI3                 0.383   peptidyl arginine deiminase, type III 
PADI1                 0.383   peptidylarginine deiminase type I 
PADI2                 0.369   peptidyl arginine deiminase, type II 
FAT2                  0.004   FAT tumor suppressor 2 precursor 
AKAP13                0.004   A-kinase anchor protein 13 isoform 1 
AKAP13                0.004   A-kinase anchor protein 13 isoform 2 
ATP2C2                0.004   ATPase, Ca++ transporting, type 2C, member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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