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Search of human proteins with 24308263
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24308263 prune [Homo sapiens]
(453 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24308263 prune [Homo sapiens] 894 0.0
gi|162287219 prune homolog 2 [Homo sapiens] 212 5e-55
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 33 0.69
gi|10863935 reticulon 1 isoform A [Homo sapiens] 32 0.91
gi|157388941 hypothetical protein LOC55071 [Homo sapiens] 32 0.91
gi|109255230 centrosomal protein 170kDa isoform beta [Homo sapiens] 32 0.91
gi|109255228 centrosomal protein 170kDa isoform alpha [Homo sapi... 32 0.91
gi|109255232 centrosomal protein 170kDa isoform gamma [Homo sapi... 32 0.91
gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapi... 32 1.2
gi|223890225 POU class 6 homeobox 1 [Homo sapiens] 32 1.5
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 31 2.0
gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi... 31 2.6
gi|74325776 MACRO domain containing 2 isoform 2 [Homo sapiens] 31 2.6
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 31 2.6
gi|122937229 zinc finger protein 629 [Homo sapiens] 31 2.6
gi|61676089 hypothetical protein LOC222584 [Homo sapiens] 31 2.6
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 30 3.4
gi|87042275 erythrocyte protein band 4.1-like 4 [Homo sapiens] 30 4.5
gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens] 30 5.9
>gi|24308263 prune [Homo sapiens]
Length = 453
Score = 894 bits (2309), Expect = 0.0
Identities = 453/453 (100%), Positives = 453/453 (100%)
Query: 1 MEDYLQGCRAALQESRPLHVVLGNEACDLDSTVSALALAFYLAKTTEAEEVFVPVLNIKR 60
MEDYLQGCRAALQESRPLHVVLGNEACDLDSTVSALALAFYLAKTTEAEEVFVPVLNIKR
Sbjct: 1 MEDYLQGCRAALQESRPLHVVLGNEACDLDSTVSALALAFYLAKTTEAEEVFVPVLNIKR 60
Query: 61 SELPLRGDIVFFLQKVHIPESILIFRDEIDLHALYQAGQLTLILVDHHILSKSDTALEEA 120
SELPLRGDIVFFLQKVHIPESILIFRDEIDLHALYQAGQLTLILVDHHILSKSDTALEEA
Sbjct: 61 SELPLRGDIVFFLQKVHIPESILIFRDEIDLHALYQAGQLTLILVDHHILSKSDTALEEA 120
Query: 121 VAEVLDHRPIEPKHCPPCHVSVELVGSCATLVTERILQGAPEILDRQTAALLHGTIILDC 180
VAEVLDHRPIEPKHCPPCHVSVELVGSCATLVTERILQGAPEILDRQTAALLHGTIILDC
Sbjct: 121 VAEVLDHRPIEPKHCPPCHVSVELVGSCATLVTERILQGAPEILDRQTAALLHGTIILDC 180
Query: 181 VNMDLKIGKATPKDSKYVEKLEALFPDLPKRNDIFDSLQKAKFDVSGLTTEQMLRKDQKT 240
VNMDLKIGKATPKDSKYVEKLEALFPDLPKRNDIFDSLQKAKFDVSGLTTEQMLRKDQKT
Sbjct: 181 VNMDLKIGKATPKDSKYVEKLEALFPDLPKRNDIFDSLQKAKFDVSGLTTEQMLRKDQKT 240
Query: 241 IYRQGVKVAISAIYMDLEAFLQRSNLLADLHAFCQAHSYDVLVAMTIFFNTHNEPVRQLA 300
IYRQGVKVAISAIYMDLEAFLQRSNLLADLHAFCQAHSYDVLVAMTIFFNTHNEPVRQLA
Sbjct: 241 IYRQGVKVAISAIYMDLEAFLQRSNLLADLHAFCQAHSYDVLVAMTIFFNTHNEPVRQLA 300
Query: 301 IFCPHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQEALS 360
IFCPHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQEALS
Sbjct: 301 IFCPHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQEALS 360
Query: 361 AYFDSMKIPSGQPETADVSREQVDKELDRASNSLISGLSQDEEDPPLPPTPMNSLVDECP 420
AYFDSMKIPSGQPETADVSREQVDKELDRASNSLISGLSQDEEDPPLPPTPMNSLVDECP
Sbjct: 361 AYFDSMKIPSGQPETADVSREQVDKELDRASNSLISGLSQDEEDPPLPPTPMNSLVDECP 420
Query: 421 LDQGLPKLSAEAVFEKCSQISLSQSTTASLSKK 453
LDQGLPKLSAEAVFEKCSQISLSQSTTASLSKK
Sbjct: 421 LDQGLPKLSAEAVFEKCSQISLSQSTTASLSKK 453
>gi|162287219 prune homolog 2 [Homo sapiens]
Length = 3088
Score = 212 bits (540), Expect = 5e-55
Identities = 136/409 (33%), Positives = 222/409 (54%), Gaps = 15/409 (3%)
Query: 1 MEDYLQGCRAALQESRPL---HVVLGNEACDLDSTVSALALAFYLAKTTEAEEVFVPVLN 57
ME++LQ ++ L S+ L HVV+G ++CDLDS +S A++L K + + +PVLN
Sbjct: 1 MEEFLQRAKSKLNRSKRLEKVHVVIGPKSCDLDSLISTFTYAYFLDKVSPPGVLCLPVLN 60
Query: 58 IKRSELPLRGDIVFFLQKVHIPESILIFRDEIDLHALYQAGQLTLILVDHHILSKSDTAL 117
I R+E + F L++++I ES IFRDEI+LH L G+L++ LV +L+ D L
Sbjct: 61 IPRTEFNYFTETRFILEELNISESFHIFRDEINLHQLNDEGKLSITLVGSSVLASEDKTL 120
Query: 118 EEAVAEVLDHRPIEPKHCPPCHVSVELVGSCATLVTERILQGAPEILDRQTAALLHGTII 177
E AV +V++ P+E +VE S ++LV + ILQ APE++ Q A L G+I+
Sbjct: 121 ESAVVKVIN--PVEQSDA-----NVEFRESSSSLVLKEILQEAPELITEQLAHRLRGSIL 173
Query: 178 LDCVNMDLKIGKATPKDSKYVEKLEALFPDLPKRNDIFDSLQKAKFDVSGLTTEQMLRKD 237
+ M+ + K + K + + LE FP+LP R DI + LQ+ +F GL+ EQ + KD
Sbjct: 174 FKWMTMESE--KISEKQEEILSILEEKFPNLPPREDIINVLQETQFSAQGLSIEQTMLKD 231
Query: 238 QKTIYRQGVKVAISAIYMDLEAFLQRSNLLADLHAFCQAHSYDVLVAMTIFFNTHNEPVR 297
K + +KVAIS + M+LE L SN+ +DL AF +DVL+ + + + +P R
Sbjct: 232 LKELSDGEIKVAISTVSMNLENCLFHSNITSDLKAFTDKFGFDVLILFSSYLSEEQQPRR 291
Query: 298 QLAIFCPHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQE 357
Q+A++ ++ L + IC LE +P L+L P + Y Q + V+ +++ +++E
Sbjct: 292 QIAVYSENMELCSQICCELEECQNPCLELEPFDCGCDEILVYQQEDPSVTCDQVVLVVKE 351
Query: 358 ALSAYFDSMKIPSGQPETADVSREQVDKELDRASNSLISGLSQDEEDPP 406
++ M S T V+ L + S+ ++ D E P
Sbjct: 352 VINRRCPEMVSNSRTSSTEAVAG---SAPLSQGSSGIMELYGSDIEPQP 397
Score = 29.3 bits (64), Expect = 7.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 407 LPPTPMNSLVDECPLDQGLPKLSAEAVFEKCS 438
+PPTPMNSLV+ P + L E + +K +
Sbjct: 608 IPPTPMNSLVESSPSTEEPASLYTEDMTQKAT 639
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 32.7 bits (73), Expect = 0.69
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 18/131 (13%)
Query: 322 PPLKLTPASSTH--PNLHAYLQGNTQVSRKKLLPLLQEALSAYFDSMKIPSGQPETADVS 379
PP+ P+S H PN+ A TQ SR K + + Y+ + P+ +P + + S
Sbjct: 1184 PPVNSLPSSHGHHFPNVAA----PTQTSRPKTPN--RASPRPYYP--QTPNNRPPSTEPS 1235
Query: 380 REQVDKELDRASNSLISGLSQDEEDPPLPPTP-MNSLVDECPLDQGLPKLSAEAVFEKCS 438
+ E AS I+GL + + PLPP P +N D+ QGL + +A+ + S
Sbjct: 1236 EISLSPERLNAS---IAGLFPPQINIPLPPRPNLNRGFDQ----QGLNPTTLKAIGQAPS 1288
Query: 439 QISLSQSTTAS 449
++++ S A+
Sbjct: 1289 NLTMNPSNFAT 1299
>gi|10863935 reticulon 1 isoform A [Homo sapiens]
Length = 776
Score = 32.3 bits (72), Expect = 0.91
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 29/161 (18%)
Query: 315 VLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQEALSAYFDSMKIPSGQPE 374
V E P +TP SS A QG +S +L+ ++EA +++ + P +
Sbjct: 320 VSEPEDDSPGSITPPSSGTEPSAAESQGKGSISEDELITAIKEAKGLSYETAENPRPVGQ 379
Query: 375 TADVSREQ-------VDKELDRASNSLISGLSQDE---EDPPL----------------- 407
AD + + LD ++S SG S+ E EDP
Sbjct: 380 LADRPEVKARSGPPTIPSPLDHEASSAESGDSEIELVSEDPMAAEDALPSGYVSFGHVGG 439
Query: 408 -PPTPMNSLVDECPL-DQGLPKLSAEAVFEKCSQISLSQST 446
PP+P + + L ++ +L +E + E C S S+ +
Sbjct: 440 PPPSPASPSIQYSILREEREAELDSELIIESCDASSASEES 480
>gi|157388941 hypothetical protein LOC55071 [Homo sapiens]
Length = 194
Score = 32.3 bits (72), Expect = 0.91
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 27/106 (25%)
Query: 312 ICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQEALSAYFDSMKIPSG 371
+C+ E+ PPL + P H L G + RK+ + +M PS
Sbjct: 21 LCDFAEQPPPPPLWIRPPGVAHAG---QLLGVPEQHRKRKIDA---------GTMAEPSA 68
Query: 372 QPETADVSREQVDKELDRASNSLISGLSQDEE-----DPPLPPTPM 412
P K D NS SG +++ DPPLPP P+
Sbjct: 69 SPS----------KRRDSGDNSAPSGQEREDHGLETGDPPLPPPPV 104
>gi|109255230 centrosomal protein 170kDa isoform beta [Homo sapiens]
Length = 1486
Score = 32.3 bits (72), Expect = 0.91
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 13/154 (8%)
Query: 304 PHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQEALSAYF 363
PH A+ + E P TP +S ++H+ L+G ++V++ K P++ + S
Sbjct: 934 PHSAISDIMSSDQETYSCKPHGRTPLTSADEHVHSKLEG-SKVTKSKTSPVVSGSSS--- 989
Query: 364 DSMKIPSGQPETADVSR-----EQVDKELDRASNSLISGLSQDEEDPPLPPTPMNSL--V 416
S +P +P + R E D EL A + ++ PPT ++ +
Sbjct: 990 KSTTLPRPRPTRTSLLRRARLGEASDSELADADKASVASEVSTTSSTSKPPTGRRNISRI 1049
Query: 417 D--ECPLDQGLPKLSAEAVFEKCSQISLSQSTTA 448
D P L LSA + E S + S TA
Sbjct: 1050 DLLAQPRRTRLGSLSARSDSEATISRSSASSRTA 1083
>gi|109255228 centrosomal protein 170kDa isoform alpha [Homo sapiens]
Length = 1584
Score = 32.3 bits (72), Expect = 0.91
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 13/154 (8%)
Query: 304 PHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQEALSAYF 363
PH A+ + E P TP +S ++H+ L+G ++V++ K P++ + S
Sbjct: 1032 PHSAISDIMSSDQETYSCKPHGRTPLTSADEHVHSKLEG-SKVTKSKTSPVVSGSSS--- 1087
Query: 364 DSMKIPSGQPETADVSR-----EQVDKELDRASNSLISGLSQDEEDPPLPPTPMNSL--V 416
S +P +P + R E D EL A + ++ PPT ++ +
Sbjct: 1088 KSTTLPRPRPTRTSLLRRARLGEASDSELADADKASVASEVSTTSSTSKPPTGRRNISRI 1147
Query: 417 D--ECPLDQGLPKLSAEAVFEKCSQISLSQSTTA 448
D P L LSA + E S + S TA
Sbjct: 1148 DLLAQPRRTRLGSLSARSDSEATISRSSASSRTA 1181
>gi|109255232 centrosomal protein 170kDa isoform gamma [Homo sapiens]
Length = 1460
Score = 32.3 bits (72), Expect = 0.91
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 13/154 (8%)
Query: 304 PHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQEALSAYF 363
PH A+ + E P TP +S ++H+ L+G ++V++ K P++ + S
Sbjct: 934 PHSAISDIMSSDQETYSCKPHGRTPLTSADEHVHSKLEG-SKVTKSKTSPVVSGSSS--- 989
Query: 364 DSMKIPSGQPETADVSR-----EQVDKELDRASNSLISGLSQDEEDPPLPPTPMNSL--V 416
S +P +P + R E D EL A + ++ PPT ++ +
Sbjct: 990 KSTTLPRPRPTRTSLLRRARLGEASDSELADADKASVASEVSTTSSTSKPPTGRRNISRI 1049
Query: 417 D--ECPLDQGLPKLSAEAVFEKCSQISLSQSTTA 448
D P L LSA + E S + S TA
Sbjct: 1050 DLLAQPRRTRLGSLSARSDSEATISRSSASSRTA 1083
>gi|157738667 FYVE and coiled-coil domain containing 1 [Homo
sapiens]
Length = 1478
Score = 32.0 bits (71), Expect = 1.2
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 322 PPLKLTPASSTHPNLHAYLQGNTQVSRKKL-LPLLQEALSAYFDSMKIPSGQPETADVSR 380
PP + + SS + +YLQ VS L PL EAL FD M++ Q E +
Sbjct: 194 PPSRSSSMSSL---VSSYLQTQEMVSNFDLNSPLNNEALEG-FDEMRLELDQLEVREKQL 249
Query: 381 EQVDKELDRASNSLISGLSQDEE 403
+ ++LDR + L + +SQ E
Sbjct: 250 RERMQQLDRENQELRAAVSQQGE 272
>gi|223890225 POU class 6 homeobox 1 [Homo sapiens]
Length = 301
Score = 31.6 bits (70), Expect = 1.5
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 335 NLHAYLQGNTQVSRKK---LLPLLQEALSAYFDSMKIPSGQPETADVSREQVDKELDR 389
NL ++ G RK+ P EAL+AYF+ +P+GQ T D+E+ R
Sbjct: 222 NLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVR 279
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 31.2 bits (69), Expect = 2.0
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 335 NLHAYLQGNTQVSRKK---LLPLLQEALSAYFDSMKIPSGQPETADVSREQVDKELDR-- 389
NL ++ RK+ P E L+A+F+ PSGQ T + D+E+ R
Sbjct: 595 NLTEFIGSEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVW 654
Query: 390 ------ASNSLISGLSQDEEDPPLPPTPMNSLVDE 418
A + I L Q E +P P+ ++E
Sbjct: 655 FCNKRQALKNTIKRLKQHEPATAVPLEPLTDSLEE 689
>gi|239508790 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 490
Score = 30.8 bits (68), Expect = 2.6
Identities = 37/138 (26%), Positives = 53/138 (38%), Gaps = 10/138 (7%)
Query: 292 HNEPVRQLAIFCPHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKL 351
H+ + PH L + ++ +SP P S H +L R +
Sbjct: 55 HHPVSPHFPLVSPHHPLMSPHYSLVSPQYSPVSPHCPLVSPHYSL-------VSPHRPLV 107
Query: 352 LPLLQEALSAYFDSMKIPSGQPET-ADVSREQVD-KELDRASNSLISGLSQDEEDPPLPP 409
PLL S D + SG P +DVS D L SL+SG+ D P PP
Sbjct: 108 SPLLSGVPSPPSDVPSLLSGVPSLPSDVSSPPSDVPSLLSDVPSLLSGVPSPPSDVPSPP 167
Query: 410 TPMNSLVDECP-LDQGLP 426
+ + S + P L G+P
Sbjct: 168 SDVPSPPSDVPSLLSGVP 185
>gi|74325776 MACRO domain containing 2 isoform 2 [Homo sapiens]
Length = 213
Score = 30.8 bits (68), Expect = 2.6
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 342 GNTQVSRKKLLPLLQEALSAYFDSMKIPSGQ--------PETADVSREQVDKELDRASNS 393
G S K + + E+ S+Y ++ ++ S Q PE ++ +Q +KE ++A
Sbjct: 94 GQENDSTKNEIKIETESQSSYMETEELSSNQEDAVIVEQPEVIPLTEDQEEKEGEKAPGE 153
Query: 394 LISGL------SQDEEDPPLPPTPMNSLVDE 418
+ S D E+ P P MNS VD+
Sbjct: 154 DTPRMPGKSEGSSDLENTPGPDVEMNSQVDK 184
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 30.8 bits (68), Expect = 2.6
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 353 PLLQEALSAYFDSMKIPSGQPETADVSREQVDKELDRASNSLISGLSQDEEDPPLPPTPM 412
P L EA SA + + GQP+ +EQ +++ +N+ L Q P LP P
Sbjct: 2430 PKLAEAPSAQPNQTQEKQGQPKPELQQQEQPEQK----TNTPQQKLPQLVSLPSLPQPPP 2485
Query: 413 NSLVDECPLDQGLPKLS 429
+ +CPL Q P S
Sbjct: 2486 QAPPPQCPLPQSSPSPS 2502
>gi|122937229 zinc finger protein 629 [Homo sapiens]
Length = 869
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 367 KIPSGQPETADVSREQVDKELDRASNSLISGLSQDEEDPPLPPTPM---NSLVDECPLDQ 423
+I G P + S++ + L+R+S QD P PPTP+ N L + PLD
Sbjct: 43 EIIMGDPAQSPESKDSTEMSLERSS--------QDPSVPQNPPTPLGHSNPLDHQIPLDP 94
Query: 424 GLPKL 428
P++
Sbjct: 95 PAPEV 99
>gi|61676089 hypothetical protein LOC222584 [Homo sapiens]
Length = 1011
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 380 REQVDKELDRASNSLISGLSQDEEDPPLPPTPMN--SLVDECPLDQGLPKLSAEAVFEKC 437
+++V+ +SNS I G E +P TP N L D+ PL + +PKL ++ K
Sbjct: 553 QKEVNSCTTGSSNSTIIGSQGSETPKEVPDTPTNVQHLTDK-PLPESIPKLPLQSEAPKM 611
Query: 438 SQISLSQSTTASLSK 452
+ + ++ + +L++
Sbjct: 612 HTLQVPENHSVALNQ 626
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 30.4 bits (67), Expect = 3.4
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 19/128 (14%)
Query: 304 PHVALQTT---ICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQEALS 360
PH++ Q +C V E H P P S P L + Q L P+ +E
Sbjct: 768 PHLSPQPEEPCLCAVPEEPHLSPQAEGPHLSPQPE---ELHLSPQTEEPHLSPVPEEPCL 824
Query: 361 AYFDSMKIPSGQPETADVSREQVDKELDRASNSLISGLSQDEEDPPLPPTPMNSLVD--E 418
S QPE + +S + + L S LS + E PPL P P + +
Sbjct: 825 ---------SPQPEESHLSPQSEEPCLSPRPEE--SHLSPELEKPPLSPRPEKPPEEPGQ 873
Query: 419 CPLDQGLP 426
CP + LP
Sbjct: 874 CPAPEELP 881
>gi|87042275 erythrocyte protein band 4.1-like 4 [Homo sapiens]
Length = 686
Score = 30.0 bits (66), Expect = 4.5
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 189 KATPKDSKYVEKLEALFPDLPKRNDIFDSLQKAKFDVSGLTTEQMLRKDQKTIYRQGVKV 248
+A P + + + + PD+ + +++ +QK D SGL+ EQ+ I QG +
Sbjct: 527 QADPNNRRSRHRSRSRSPDIQAKEELWKHIQKELVDPSGLSEEQLKEIPYTKIETQGDPI 586
Query: 249 AI 250
I
Sbjct: 587 RI 588
>gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]
Length = 4861
Score = 29.6 bits (65), Expect = 5.9
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 246 VKVAISAIYMDLEAFLQRSNLLADLHAFCQAHSYDVLVAMTIF-FNTHNEPVR-QLAIFC 303
++VA+ IY L A L+R+ L A+ H + L+ +T+F + H +PV LAI
Sbjct: 1721 IQVAVHKIYQQLSATLERA-LQANKH---HIEAQQRLLLVTVFALSVHYQPVDVSLAIST 1776
Query: 304 PHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQEALSAYF 363
+ + + +C + PL+L P + + L +V+ +LL +L Y
Sbjct: 1777 GLLNVLSQLCGT-DTMLGQPLQLLPKTGV-----SQLSTALKVASTRLLQILAITTGTYA 1830
Query: 364 DSM 366
D +
Sbjct: 1831 DKL 1833
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,468,226
Number of Sequences: 37866
Number of extensions: 732630
Number of successful extensions: 2551
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2529
Number of HSP's gapped (non-prelim): 31
length of query: 453
length of database: 18,247,518
effective HSP length: 106
effective length of query: 347
effective length of database: 14,233,722
effective search space: 4939101534
effective search space used: 4939101534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.