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Search of human proteins with 24308211
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24308211 integrator complex subunit 2 [Homo sapiens]
(1204 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24308211 integrator complex subunit 2 [Homo sapiens] 2363 0.0
gi|93204865 hypothetical protein LOC57724 [Homo sapiens] 40 0.017
gi|55743124 receptor-interacting factor 1 isoform 1 [Homo sapiens] 39 0.023
gi|7661566 integrator complex subunit 7 [Homo sapiens] 34 0.73
gi|153252198 septin 14 [Homo sapiens] 33 2.1
gi|134133246 hypothetical protein LOC285753 [Homo sapiens] 32 2.8
gi|28603844 hypothetical protein LOC285753 [Homo sapiens] 32 2.8
gi|194018550 c-Maf-inducing protein isoform C-mip [Homo sapiens] 32 3.6
gi|29789255 c-Maf-inducing protein isoform Tc-mip [Homo sapiens] 32 3.6
gi|149158725 N-terminal EF-hand calcium binding protein 3 isofor... 32 4.8
gi|149158723 N-terminal EF-hand calcium binding protein 3 isofor... 32 4.8
gi|34222389 HpaII tiny fragments locus 9C [Homo sapiens] 31 6.2
gi|51173878 HpaII tiny fragments locus 9C [Homo sapiens] 31 6.2
gi|7669528 neuregulin 2 isoform 2 [Homo sapiens] 31 6.2
gi|7669532 neuregulin 2 isoform 4 [Homo sapiens] 31 6.2
gi|7669530 neuregulin 2 isoform 3 [Homo sapiens] 31 6.2
gi|4758832 neuregulin 2 isoform 1 [Homo sapiens] 31 6.2
gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Ho... 31 6.2
gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Hom... 31 6.2
>gi|24308211 integrator complex subunit 2 [Homo sapiens]
Length = 1204
Score = 2363 bits (6123), Expect = 0.0
Identities = 1204/1204 (100%), Positives = 1204/1204 (100%)
Query: 1 MKDQQTVIMTECTSLQFVSPFAFEAMQKVDVVCLASLSDPELRLLLPCLVRMALCAPADQ 60
MKDQQTVIMTECTSLQFVSPFAFEAMQKVDVVCLASLSDPELRLLLPCLVRMALCAPADQ
Sbjct: 1 MKDQQTVIMTECTSLQFVSPFAFEAMQKVDVVCLASLSDPELRLLLPCLVRMALCAPADQ 60
Query: 61 SQSWAQDKKLILRLLSGVEAVNSIVALLSVDFHALEQDASKEQQLRHKLGGGSGESILVS 120
SQSWAQDKKLILRLLSGVEAVNSIVALLSVDFHALEQDASKEQQLRHKLGGGSGESILVS
Sbjct: 61 SQSWAQDKKLILRLLSGVEAVNSIVALLSVDFHALEQDASKEQQLRHKLGGGSGESILVS 120
Query: 121 QLQHGLTLEFEHSDSPRRLRLVLSELLAIMNKVSESNGEFFFKSSELFESPVYLEEAADV 180
QLQHGLTLEFEHSDSPRRLRLVLSELLAIMNKVSESNGEFFFKSSELFESPVYLEEAADV
Sbjct: 121 QLQHGLTLEFEHSDSPRRLRLVLSELLAIMNKVSESNGEFFFKSSELFESPVYLEEAADV 180
Query: 181 LCILQAELPSLLPIVDVAEALLHVRNGAWFLCLLVANVPDSFNEVCRGLIKNGERQDEES 240
LCILQAELPSLLPIVDVAEALLHVRNGAWFLCLLVANVPDSFNEVCRGLIKNGERQDEES
Sbjct: 181 LCILQAELPSLLPIVDVAEALLHVRNGAWFLCLLVANVPDSFNEVCRGLIKNGERQDEES 240
Query: 241 LGGRRRTDALRFLCKMNPSQALKVRGMVVEECHLPGLGVALTLDHTKNEACEDGVSDLVC 300
LGGRRRTDALRFLCKMNPSQALKVRGMVVEECHLPGLGVALTLDHTKNEACEDGVSDLVC
Sbjct: 241 LGGRRRTDALRFLCKMNPSQALKVRGMVVEECHLPGLGVALTLDHTKNEACEDGVSDLVC 300
Query: 301 FVSGLLLGTNAKVRTWFGTFIRNGQQRKRETSSSVLWQMRRQLLLELMGILPTVRSTRIV 360
FVSGLLLGTNAKVRTWFGTFIRNGQQRKRETSSSVLWQMRRQLLLELMGILPTVRSTRIV
Sbjct: 301 FVSGLLLGTNAKVRTWFGTFIRNGQQRKRETSSSVLWQMRRQLLLELMGILPTVRSTRIV 360
Query: 361 EEADVDMEPNVSVYSGLKEEHVVKASALLRLYCALMGIAGLKPTEEEAEQLLQLMTSRPP 420
EEADVDMEPNVSVYSGLKEEHVVKASALLRLYCALMGIAGLKPTEEEAEQLLQLMTSRPP
Sbjct: 361 EEADVDMEPNVSVYSGLKEEHVVKASALLRLYCALMGIAGLKPTEEEAEQLLQLMTSRPP 420
Query: 421 ATPAGVRFVSLSFCMLLAFSTLVSTPEQEQLMVVWLSWMIKEEAYFESTSGVSASFGEML 480
ATPAGVRFVSLSFCMLLAFSTLVSTPEQEQLMVVWLSWMIKEEAYFESTSGVSASFGEML
Sbjct: 421 ATPAGVRFVSLSFCMLLAFSTLVSTPEQEQLMVVWLSWMIKEEAYFESTSGVSASFGEML 480
Query: 481 LLVAMYFHSNQLSAIIDLVCSTLGMKIVIKPSSLSRMKTIFTQEIFTEQVVTAHAVRVPV 540
LLVAMYFHSNQLSAIIDLVCSTLGMKIVIKPSSLSRMKTIFTQEIFTEQVVTAHAVRVPV
Sbjct: 481 LLVAMYFHSNQLSAIIDLVCSTLGMKIVIKPSSLSRMKTIFTQEIFTEQVVTAHAVRVPV 540
Query: 541 TSNLSANITGFLPIHCIYQLLRSRSFTKHKVSIKDWIYRQLCETSTPLHPQLLPLIDVYI 600
TSNLSANITGFLPIHCIYQLLRSRSFTKHKVSIKDWIYRQLCETSTPLHPQLLPLIDVYI
Sbjct: 541 TSNLSANITGFLPIHCIYQLLRSRSFTKHKVSIKDWIYRQLCETSTPLHPQLLPLIDVYI 600
Query: 601 NSILTPASKSNPEATNQPVTEQEILNIFQGVIGGDNIRLNQRFSITAQLLVLYYILSYEE 660
NSILTPASKSNPEATNQPVTEQEILNIFQGVIGGDNIRLNQRFSITAQLLVLYYILSYEE
Sbjct: 601 NSILTPASKSNPEATNQPVTEQEILNIFQGVIGGDNIRLNQRFSITAQLLVLYYILSYEE 660
Query: 661 ALLANTKTLAAMQRKPKSYSSSLMDQIPIKFLIRQAQGLQQELGGLHSALLRLLATNYPH 720
ALLANTKTLAAMQRKPKSYSSSLMDQIPIKFLIRQAQGLQQELGGLHSALLRLLATNYPH
Sbjct: 661 ALLANTKTLAAMQRKPKSYSSSLMDQIPIKFLIRQAQGLQQELGGLHSALLRLLATNYPH 720
Query: 721 LCIVDDWICEEEITGTDALLRRMLLTNNAKNHSPKQLQEAFSAVPVNHTQVMQIIEHLTL 780
LCIVDDWICEEEITGTDALLRRMLLTNNAKNHSPKQLQEAFSAVPVNHTQVMQIIEHLTL
Sbjct: 721 LCIVDDWICEEEITGTDALLRRMLLTNNAKNHSPKQLQEAFSAVPVNHTQVMQIIEHLTL 780
Query: 781 LSASELIPYAEVLTSNMSQLLNSGVPRRILQTVNKLWMVLNTVMPRRLWVMTVNALQPSI 840
LSASELIPYAEVLTSNMSQLLNSGVPRRILQTVNKLWMVLNTVMPRRLWVMTVNALQPSI
Sbjct: 781 LSASELIPYAEVLTSNMSQLLNSGVPRRILQTVNKLWMVLNTVMPRRLWVMTVNALQPSI 840
Query: 841 KFVRQQKYTQNDLMIDPLIVLRCDQRVHRCPPLMDITLHMLNGYLLASKAYLSAHLKETE 900
KFVRQQKYTQNDLMIDPLIVLRCDQRVHRCPPLMDITLHMLNGYLLASKAYLSAHLKETE
Sbjct: 841 KFVRQQKYTQNDLMIDPLIVLRCDQRVHRCPPLMDITLHMLNGYLLASKAYLSAHLKETE 900
Query: 901 QDRPSQNNTIGLVGQTDAPEVTREELKNALLAAQDSAAVQILLEICLPTEEEKANGVNPD 960
QDRPSQNNTIGLVGQTDAPEVTREELKNALLAAQDSAAVQILLEICLPTEEEKANGVNPD
Sbjct: 901 QDRPSQNNTIGLVGQTDAPEVTREELKNALLAAQDSAAVQILLEICLPTEEEKANGVNPD 960
Query: 961 SLLRNVQSVITTSAPNKGMEEGEDNLLCNLREVQCLICCLLHQMYIADPNIAKLVHFQGY 1020
SLLRNVQSVITTSAPNKGMEEGEDNLLCNLREVQCLICCLLHQMYIADPNIAKLVHFQGY
Sbjct: 961 SLLRNVQSVITTSAPNKGMEEGEDNLLCNLREVQCLICCLLHQMYIADPNIAKLVHFQGY 1020
Query: 1021 PCELLPLTVAGIPSMHICLDFIPELIAQPELEKQIFAIQLLSHLCIQYALPKSLSVARLA 1080
PCELLPLTVAGIPSMHICLDFIPELIAQPELEKQIFAIQLLSHLCIQYALPKSLSVARLA
Sbjct: 1021 PCELLPLTVAGIPSMHICLDFIPELIAQPELEKQIFAIQLLSHLCIQYALPKSLSVARLA 1080
Query: 1081 VNVMGTLLTVLTQAKRYAFFMPTLPSLVSFCRAFPPLYEDIMSLLIQIGQVCASDVATQT 1140
VNVMGTLLTVLTQAKRYAFFMPTLPSLVSFCRAFPPLYEDIMSLLIQIGQVCASDVATQT
Sbjct: 1081 VNVMGTLLTVLTQAKRYAFFMPTLPSLVSFCRAFPPLYEDIMSLLIQIGQVCASDVATQT 1140
Query: 1141 RDIDPIITRLQQIKEKPSGWSQICKDSSYKNGSRDTGSMDPDVQLCHCIERTVIEIINMS 1200
RDIDPIITRLQQIKEKPSGWSQICKDSSYKNGSRDTGSMDPDVQLCHCIERTVIEIINMS
Sbjct: 1141 RDIDPIITRLQQIKEKPSGWSQICKDSSYKNGSRDTGSMDPDVQLCHCIERTVIEIINMS 1200
Query: 1201 VSGI 1204
VSGI
Sbjct: 1201 VSGI 1204
>gi|93204865 hypothetical protein LOC57724 [Homo sapiens]
Length = 2579
Score = 39.7 bits (91), Expect = 0.017
Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 42/287 (14%)
Query: 683 LMDQI--PIKFLIRQAQGLQQELGGL--HSALLRLLATNYPHLCIVDDWICEEEITGTDA 738
L+DQ P+ L+ Q L L + + ++L +++YP I + +E A
Sbjct: 2133 LVDQTDSPLLSLLGQTSSLSWHLVDIVSYQSVLSYFSSHYPPSII----LAKESY----A 2184
Query: 739 LLRRMLLTNNAKNHSPKQLQEAFSAVPVNHTQVMQIIEHLTLLSASELIPYAEVLTSNMS 798
L LL +A P Q+ AVP Q+++ L+ L + I A VL MS
Sbjct: 2185 ELIMKLLKVSAGLSIPTDSQKHLDAVPKCQAFTHQMVQFLSTLEQNGKITLA-VLEQEMS 2243
Query: 799 QLLNSGV----PRRILQTVNKLWMVLNTVMPRRLWVMTVNALQPSIKFVRQQKYT----- 849
+LL+ + P QT + M L+++ L +M NA P+ +F+R T
Sbjct: 2244 KLLDDIIVFNPPDMDSQTRH---MALSSLFMEVLMMMN-NATIPTAEFLRGSIRTWIGQK 2299
Query: 850 QNDLMIDPLIVLRCDQRVHRCPPLMDITLHMLNGYLLASKAYLSAHLKETEQDRPSQNNT 909
+ L++ PL+ C + HM ++A ++A+ KE+ + QN+
Sbjct: 2300 MHGLVVLPLLTAACQS--------LASVRHMAE----TTEACITAYFKESPLN---QNSG 2344
Query: 910 IG-LVGQTDAPEVTREELKNALLAAQDSAAVQILLEICLPTEEEKAN 955
G ++ PE+T EE L + + L CL +E+ N
Sbjct: 2345 WGPILVSLQVPELTMEEFLQECLTLGSYLTLYVYLLQCLNSEQTLRN 2391
>gi|55743124 receptor-interacting factor 1 isoform 1 [Homo sapiens]
Length = 769
Score = 39.3 bits (90), Expect = 0.023
Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 744 LLTNNAKNHSPKQLQEAFSAVPVNHTQVMQIIEHLTLLSA---SELIPYAEVLTSNMSQL 800
++T N +N PK + E V +N TQ+ + + T L S+ P + N+
Sbjct: 241 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF 300
Query: 801 LNSGVPRRILQTVNKLWMVLNTVMPRRLWVMTVNALQPSIKFVRQQKYTQNDLMIDPLIV 860
S VP + + N +L T FV ++ N + + PL
Sbjct: 301 TPSLVP--VKSSNNVASKILKT-------------------FVDRKNLGDNTINMPPLST 339
Query: 861 LRCDQRVHRCPPLMDITLHMLNG--YLLASKA--YLSAHLKE---TEQDRPSQNNTIGLV 913
+ + P+ D L M NG YLLA K L + + + D P + +T+ V
Sbjct: 340 IDPSGTRSKNMPIKDNALVMFNGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTV 399
Query: 914 GQTDAPEVTREELKNALLAAQDSAAVQ 940
+ E++R E+ N +LA S+ ++
Sbjct: 400 SSSPVTEISR-EVVNIVLAKSKSSQME 425
>gi|7661566 integrator complex subunit 7 [Homo sapiens]
Length = 962
Score = 34.3 bits (77), Expect = 0.73
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 408 AEQLLQLMTSRPPATPAGVRFVSLSFCMLLAFSTLVSTPEQEQLMVVWL 456
A QLLQ + + P+T + VSL LLA S+LV TP+Q QL++ +L
Sbjct: 214 ARQLLQQLVTSYPSTKMVI--VSLHTFTLLAASSLVDTPKQIQLLLQYL 260
>gi|153252198 septin 14 [Homo sapiens]
Length = 432
Score = 32.7 bits (73), Expect = 2.1
Identities = 46/204 (22%), Positives = 84/204 (41%), Gaps = 40/204 (19%)
Query: 837 QPSIKFVRQQ--KYTQNDLMIDPLIVLRCDQRVHRCPPLMDITLHMLNGYLLASKAYLSA 894
QP + ++ Q Y Q +L I + D RVH C + T H L L
Sbjct: 126 QPIVDYIDAQFEAYLQEELKIKRSLFEYHDSRVHVCLYFISPTGHSLKSLDLL------- 178
Query: 895 HLKETEQDRPSQNNTIGLVGQTDAPEVTREEL---KNALLAAQDSAAVQILLEICLPTEE 951
T ++ S+ N I L+ + D +++ +L KN +++ S +QI LPT+E
Sbjct: 179 ----TMKNLDSKVNIIPLIAKADT--ISKNDLQTFKNKIMSELISNGIQIYQ---LPTDE 229
Query: 952 EKA-------NGVNPDSLLRNVQSVITTSAPNKGME------EGEDNLLCNLREVQCLIC 998
E A +G+ P +++ + V +G + E+ C+ +++ ++
Sbjct: 230 ETAAQANSSVSGLLPFAVVGSTDEVKVGKRMVRGRHYPWGVLQVENENHCDFVKLRDMLL 289
Query: 999 CLLHQMYIADPNIAKLVHFQGYPC 1022
C + N+ + H Q Y C
Sbjct: 290 CTNME------NLKEKTHTQHYEC 307
>gi|134133246 hypothetical protein LOC285753 [Homo sapiens]
Length = 460
Score = 32.3 bits (72), Expect = 2.8
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 947 LPTEEEKANGV--NPDSLLRNVQSVITTSAPN-----KGMEEGEDNLLCNLREVQCLICC 999
+P + EK+ + N LL +Q + + K M+E E + +C+ +++C + C
Sbjct: 309 IPPDSEKSISICDNLSELLMAMQDELDQMSMEHQELLKQMKETESHSVCD--DIECELEC 366
Query: 1000 LLHQMYIADPNIAKLVHFQGYPCEL 1024
LL +M I I+KL Q C+L
Sbjct: 367 LLKKMEIKGEQISKLKKHQDSVCKL 391
>gi|28603844 hypothetical protein LOC285753 [Homo sapiens]
Length = 460
Score = 32.3 bits (72), Expect = 2.8
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 947 LPTEEEKANGV--NPDSLLRNVQSVITTSAPN-----KGMEEGEDNLLCNLREVQCLICC 999
+P + EK+ + N LL +Q + + K M+E E + +C+ +++C + C
Sbjct: 309 IPPDSEKSISICDNLSELLMAMQDELDQMSMEHQELLKQMKETESHSVCD--DIECELEC 366
Query: 1000 LLHQMYIADPNIAKLVHFQGYPCEL 1024
LL +M I I+KL Q C+L
Sbjct: 367 LLKKMEIKGEQISKLKKHQDSVCKL 391
>gi|194018550 c-Maf-inducing protein isoform C-mip [Homo sapiens]
Length = 773
Score = 32.0 bits (71), Expect = 3.6
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 380 EHVVKASAL--LRLYCALMGIAGLKPTEEEAEQLLQLMTSRPPATPAGVRFVS--LSFCM 435
EH++K +L L L+ G AGL+ E L L P T AG+ +S S C
Sbjct: 680 EHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCETPVTDAGLLALSSMKSLCS 739
Query: 436 LLAFSTLVSTPEQEQL 451
L ST +S E L
Sbjct: 740 LNMNSTKLSADTYEDL 755
>gi|29789255 c-Maf-inducing protein isoform Tc-mip [Homo sapiens]
Length = 679
Score = 32.0 bits (71), Expect = 3.6
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 380 EHVVKASAL--LRLYCALMGIAGLKPTEEEAEQLLQLMTSRPPATPAGVRFVS--LSFCM 435
EH++K +L L L+ G AGL+ E L L P T AG+ +S S C
Sbjct: 586 EHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCETPVTDAGLLALSSMKSLCS 645
Query: 436 LLAFSTLVSTPEQEQL 451
L ST +S E L
Sbjct: 646 LNMNSTKLSADTYEDL 661
>gi|149158725 N-terminal EF-hand calcium binding protein 3 isoform 1
[Homo sapiens]
Length = 362
Score = 31.6 bits (70), Expect = 4.8
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 24/150 (16%)
Query: 583 ETSTPLHPQLLP---------LIDVYINSILTPASKSNPEA-----TNQPVTEQEILNIF 628
+ TP HPQL P DV+ + K + E + ++ E+ +F
Sbjct: 20 QPQTPRHPQLAPDPGPAGHTLFQDVFRRADKNDDGKLSFEEFQNYFADGVLSLGELQELF 79
Query: 629 QGVIG--GDNIRLNQRFSITAQLLVLYY-ILSYEEALLANTKTLAAMQRKPKSYS-SSLM 684
G+ G DN+ + ++ L +Y +L+ E+L N LAAM Y +S +
Sbjct: 80 SGIDGHLTDNLETEKLCDYFSEHLGVYRPVLAALESL--NRAVLAAMDATKLEYERASKV 137
Query: 685 DQIPIKFLIR----QAQGLQQELGGLHSAL 710
DQ +FL+R Q Q LQ L G L
Sbjct: 138 DQFVTRFLLRETVSQLQALQSSLEGASDTL 167
>gi|149158723 N-terminal EF-hand calcium binding protein 3 isoform 2
[Homo sapiens]
Length = 396
Score = 31.6 bits (70), Expect = 4.8
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 24/150 (16%)
Query: 583 ETSTPLHPQLLP---------LIDVYINSILTPASKSNPEA-----TNQPVTEQEILNIF 628
+ TP HPQL P DV+ + K + E + ++ E+ +F
Sbjct: 20 QPQTPRHPQLAPDPGPAGHTLFQDVFRRADKNDDGKLSFEEFQNYFADGVLSLGELQELF 79
Query: 629 QGVIG--GDNIRLNQRFSITAQLLVLYY-ILSYEEALLANTKTLAAMQRKPKSYS-SSLM 684
G+ G DN+ + ++ L +Y +L+ E+L N LAAM Y +S +
Sbjct: 80 SGIDGHLTDNLETEKLCDYFSEHLGVYRPVLAALESL--NRAVLAAMDATKLEYERASKV 137
Query: 685 DQIPIKFLIR----QAQGLQQELGGLHSAL 710
DQ +FL+R Q Q LQ L G L
Sbjct: 138 DQFVTRFLLRETVSQLQALQSSLEGASDTL 167
>gi|34222389 HpaII tiny fragments locus 9C [Homo sapiens]
Length = 625
Score = 31.2 bits (69), Expect = 6.2
Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 38/201 (18%)
Query: 396 MGIAGLKPTEEEAEQLLQLMTSRPPATPAGVRFVSLSFCMLLAFSTLVSTPEQEQLM--- 452
M IA P + E+L +L TS AG S C+ TP QE L
Sbjct: 327 MAIAYFHPQKLSPEELAELKTSLAQHFTAGPGRASGVTCLYFVEEGQRKTPSQEGLPLEH 386
Query: 453 ----------VVWLSWMIKEEAYFESTSGVSASFGEMLLLVAM-YFHSNQLSAIIDLVC- 500
++ L++ I A+F+ V+ E+L V + + S ++D+ C
Sbjct: 387 VAGDRCIHEDLLGLTFRISPHAFFQ----VNTPAAEVLYTVIQDWAQLDAGSMVLDVCCG 442
Query: 501 -STLGMKIVIKPSSLSRMKTIFTQEIFTEQVVTAHAVRVPVTSNLSANITGFLPIHC--- 556
T+G+ + K +K + E+ E V A RV N +N+ HC
Sbjct: 443 TGTIGLALARK------VKRVIGVELCPEAVEDA---RVNAQDNELSNV----EFHCGRA 489
Query: 557 --IYQLLRSRSFTKHKVSIKD 575
+ L SR ++H V+I D
Sbjct: 490 EDLVPTLVSRLASQHLVAILD 510
>gi|51173878 HpaII tiny fragments locus 9C [Homo sapiens]
Length = 625
Score = 31.2 bits (69), Expect = 6.2
Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 38/201 (18%)
Query: 396 MGIAGLKPTEEEAEQLLQLMTSRPPATPAGVRFVSLSFCMLLAFSTLVSTPEQEQLM--- 452
M IA P + E+L +L TS AG S C+ TP QE L
Sbjct: 327 MAIAYFHPQKLSPEELAELKTSLAQHFTAGPGRASGVTCLYFVEEGQRKTPSQEGLPLEH 386
Query: 453 ----------VVWLSWMIKEEAYFESTSGVSASFGEMLLLVAM-YFHSNQLSAIIDLVC- 500
++ L++ I A+F+ V+ E+L V + + S ++D+ C
Sbjct: 387 VAGDRCIHEDLLGLTFRISPHAFFQ----VNTPAAEVLYTVIQDWAQLDAGSMVLDVCCG 442
Query: 501 -STLGMKIVIKPSSLSRMKTIFTQEIFTEQVVTAHAVRVPVTSNLSANITGFLPIHC--- 556
T+G+ + K +K + E+ E V A RV N +N+ HC
Sbjct: 443 TGTIGLALARK------VKRVIGVELCPEAVEDA---RVNAQDNELSNV----EFHCGRA 489
Query: 557 --IYQLLRSRSFTKHKVSIKD 575
+ L SR ++H V+I D
Sbjct: 490 EDLVPTLVSRLASQHLVAILD 510
>gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]
Length = 844
Score = 31.2 bits (69), Expect = 6.2
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 1091 LTQAKRYAFFMPTLPSLVSFCRAFPPLYEDIMSLLIQIGQVCASDVATQTRDIDPIITRL 1150
L + +RY FF+ + F AF PL + +L ++G++ +D AT+ + + + ++
Sbjct: 188 LERNQRYIFFLEPTEQPLVFKTAFAPLDTNGKNLKKEVGKILCTDCATRPK-LKKMKSQT 246
Query: 1151 QQIKEKPS 1158
Q+ EK S
Sbjct: 247 GQVGEKQS 254
>gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]
Length = 852
Score = 31.2 bits (69), Expect = 6.2
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 1091 LTQAKRYAFFMPTLPSLVSFCRAFPPLYEDIMSLLIQIGQVCASDVATQTRDIDPIITRL 1150
L + +RY FF+ + F AF PL + +L ++G++ +D AT+ + + + ++
Sbjct: 188 LERNQRYIFFLEPTEQPLVFKTAFAPLDTNGKNLKKEVGKILCTDCATRPK-LKKMKSQT 246
Query: 1151 QQIKEKPS 1158
Q+ EK S
Sbjct: 247 GQVGEKQS 254
>gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]
Length = 858
Score = 31.2 bits (69), Expect = 6.2
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 1091 LTQAKRYAFFMPTLPSLVSFCRAFPPLYEDIMSLLIQIGQVCASDVATQTRDIDPIITRL 1150
L + +RY FF+ + F AF PL + +L ++G++ +D AT+ + + + ++
Sbjct: 188 LERNQRYIFFLEPTEQPLVFKTAFAPLDTNGKNLKKEVGKILCTDCATRPK-LKKMKSQT 246
Query: 1151 QQIKEKPS 1158
Q+ EK S
Sbjct: 247 GQVGEKQS 254
>gi|4758832 neuregulin 2 isoform 1 [Homo sapiens]
Length = 850
Score = 31.2 bits (69), Expect = 6.2
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 1091 LTQAKRYAFFMPTLPSLVSFCRAFPPLYEDIMSLLIQIGQVCASDVATQTRDIDPIITRL 1150
L + +RY FF+ + F AF PL + +L ++G++ +D AT+ + + + ++
Sbjct: 188 LERNQRYIFFLEPTEQPLVFKTAFAPLDTNGKNLKKEVGKILCTDCATRPK-LKKMKSQT 246
Query: 1151 QQIKEKPS 1158
Q+ EK S
Sbjct: 247 GQVGEKQS 254
>gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Homo
sapiens]
Length = 1687
Score = 31.2 bits (69), Expect = 6.2
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 291 CEDGVSDLVCFVSGL-----LLGTNAKVRTWFGTFIRNGQQRKRETSSSVLWQMRR-QLL 344
CE+ LVC ++GL + G A + +R+ ++ K + + L ++ L
Sbjct: 1025 CEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNL 1084
Query: 345 LELM-----GILPTVRSTRIVEEA 363
+EL+ GI PT+R R+ EEA
Sbjct: 1085 MELLIARHPGIPPTLRDGRLEEEA 1108
>gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Homo
sapiens]
Length = 1659
Score = 31.2 bits (69), Expect = 6.2
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 291 CEDGVSDLVCFVSGL-----LLGTNAKVRTWFGTFIRNGQQRKRETSSSVLWQMRR-QLL 344
CE+ LVC ++GL + G A + +R+ ++ K + + L ++ L
Sbjct: 1025 CEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNL 1084
Query: 345 LELM-----GILPTVRSTRIVEEA 363
+EL+ GI PT+R R+ EEA
Sbjct: 1085 MELLIARHPGIPPTLRDGRLEEEA 1108
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,949,008
Number of Sequences: 37866
Number of extensions: 1851929
Number of successful extensions: 4224
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 4218
Number of HSP's gapped (non-prelim): 26
length of query: 1204
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1090
effective length of database: 13,930,794
effective search space: 15184565460
effective search space used: 15184565460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.