Search of human proteins with 24308007

Search of human proteins with 24308007

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|24308007 ADP-ribosylation factor-like 6 interacting protein
[Homo sapiens]
         (203 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|24308007 ADP-ribosylation factor-like 6 interacting protein [...   410   e-115
gi|187607445 hypothetical protein LOC79137 [Homo sapiens]              42   3e-04
gi|34734079 frizzled 6 [Homo sapiens]                                  33   0.22 
gi|30023820 hypothetical protein LOC162427 [Homo sapiens]              29   2.4  
gi|31563531 stromal antigen 2 isoform b [Homo sapiens]                 29   3.1  
gi|112789530 stromal antigen 2 isoform b [Homo sapiens]                29   3.1  
gi|112789528 stromal antigen 2 isoform a [Homo sapiens]                29   3.1  
gi|112789526 stromal antigen 2 isoform a [Homo sapiens]                29   3.1  
gi|116517323 olfactory receptor, family 4, subfamily C, member 1...    29   3.1  
gi|28395049 mitochondrial COX18 [Homo sapiens]                         27   9.1  

>gi|24308007 ADP-ribosylation factor-like 6 interacting protein
           [Homo sapiens]
          Length = 203

 Score =  410 bits (1053), Expect = e-115
 Identities = 203/203 (100%), Positives = 203/203 (100%)

Query: 1   MAEGDNRSTNLLAAETASLEEQLQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLIIY 60
           MAEGDNRSTNLLAAETASLEEQLQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLIIY
Sbjct: 1   MAEGDNRSTNLLAAETASLEEQLQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLIIY 60

Query: 61  YLDPSVLSGVSCFVMFLCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAV 120
           YLDPSVLSGVSCFVMFLCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAV
Sbjct: 61  YLDPSVLSGVSCFVMFLCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAV 120

Query: 121 GWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGII 180
           GWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGII
Sbjct: 121 GWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGII 180

Query: 181 LKYIGMAKREINKLLKQKEKKNE 203
           LKYIGMAKREINKLLKQKEKKNE
Sbjct: 181 LKYIGMAKREINKLLKQKEKKNE 203


>gi|187607445 hypothetical protein LOC79137 [Homo sapiens]
          Length = 543

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 42/193 (21%), Positives = 79/193 (40%), Gaps = 16/193 (8%)

Query: 2   AEGDNRSTNLLAAETASLEEQLQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLII-- 59
           AE +  +   +     +L  +L+GW  V+  A ++L WE+          ++ +F ++  
Sbjct: 39  AEEEAATAEAVGRLATTLWLRLRGWEAVLAAAQRLLVWEKPLHSLVTAAALNGLFWLLSS 98

Query: 60  YYLDPSVLSGVSCFVMFLCLADYLVPILAPRIFGSNKWTTEQQQ-------RFH-----E 107
             L P  L  VS    F  L D   P   P +  S+               R H     E
Sbjct: 99  SSLRPFFLLSVSLLAYF--LLDLWQPRFLPDVSASSPEEPHSDSEGAGSGARPHLLSVPE 156

Query: 108 ICSNLVKTRRRAVGWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLIVTS 167
           +C  L ++        + L   K + P  + + +    A +A +G  V  ++++Y+++ S
Sbjct: 157 LCRYLAESWLTFQIHLQELLQYKRQNPAQFCVRVCSGCAVLAVLGHYVPGIMISYIVLLS 216

Query: 168 LLLLPGLNQHGII 180
           +LL P +  H +I
Sbjct: 217 ILLWPLVVYHELI 229


>gi|34734079 frizzled 6 [Homo sapiens]
          Length = 706

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 19/83 (22%)

Query: 82  YLVPILA----------PRIFGSNKWTTEQQQRFHEICSNLVKTRRRAVGWWKRLFTLKE 131
           YLVP++            RI     W ++  +++H  C    K + R       LF +K 
Sbjct: 424 YLVPLVTLLGCYVYEQVNRITWEITWVSDHCRQYHIPCPYQAKAKARPE---LALFMIK- 479

Query: 132 EKPKMYFMTMIVSLAAVAWVGQQ 154
                Y MT+IV ++AV WVG +
Sbjct: 480 -----YLMTLIVGISAVFWVGSK 497


>gi|30023820 hypothetical protein LOC162427 [Homo sapiens]
          Length = 466

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/66 (21%), Positives = 35/66 (53%)

Query: 107 EICSNLVKTRRRAVGWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLIVT 166
           E+C ++ +       + + +   K++ P  + +     L  +A +G+ V  LLL+YL++ 
Sbjct: 139 ELCHHVAEVWVSGTIFIRNVLLFKKQNPGKFCLLSCGILTFLAVLGRYVPGLLLSYLMLV 198

Query: 167 SLLLLP 172
           ++++ P
Sbjct: 199 TVMMWP 204


>gi|31563531 stromal antigen 2 isoform b [Homo sapiens]
          Length = 1231

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 11/81 (13%)

Query: 121 GWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLI----VTSLLLLPGLNQ 176
           G  KR+ T KE+K ++   T I  L AVA     +  LL  Y +    VT+LL LP    
Sbjct: 542 GTGKRVLTAKEKKTQLDDRTKITELFAVA-----LPQLLAKYSVDAEKVTNLLQLP--QY 594

Query: 177 HGIILKYIGMAKREINKLLKQ 197
             + +   G  ++ ++ LL+Q
Sbjct: 595 FDLEIYTTGRLEKHLDALLRQ 615


>gi|112789530 stromal antigen 2 isoform b [Homo sapiens]
          Length = 1231

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 11/81 (13%)

Query: 121 GWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLI----VTSLLLLPGLNQ 176
           G  KR+ T KE+K ++   T I  L AVA     +  LL  Y +    VT+LL LP    
Sbjct: 542 GTGKRVLTAKEKKTQLDDRTKITELFAVA-----LPQLLAKYSVDAEKVTNLLQLP--QY 594

Query: 177 HGIILKYIGMAKREINKLLKQ 197
             + +   G  ++ ++ LL+Q
Sbjct: 595 FDLEIYTTGRLEKHLDALLRQ 615


>gi|112789528 stromal antigen 2 isoform a [Homo sapiens]
          Length = 1268

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 11/81 (13%)

Query: 121 GWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLI----VTSLLLLPGLNQ 176
           G  KR+ T KE+K ++   T I  L AVA     +  LL  Y +    VT+LL LP    
Sbjct: 542 GTGKRVLTAKEKKTQLDDRTKITELFAVA-----LPQLLAKYSVDAEKVTNLLQLP--QY 594

Query: 177 HGIILKYIGMAKREINKLLKQ 197
             + +   G  ++ ++ LL+Q
Sbjct: 595 FDLEIYTTGRLEKHLDALLRQ 615


>gi|112789526 stromal antigen 2 isoform a [Homo sapiens]
          Length = 1268

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 11/81 (13%)

Query: 121 GWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLI----VTSLLLLPGLNQ 176
           G  KR+ T KE+K ++   T I  L AVA     +  LL  Y +    VT+LL LP    
Sbjct: 542 GTGKRVLTAKEKKTQLDDRTKITELFAVA-----LPQLLAKYSVDAEKVTNLLQLP--QY 594

Query: 177 HGIILKYIGMAKREINKLLKQ 197
             + +   G  ++ ++ LL+Q
Sbjct: 595 FDLEIYTTGRLEKHLDALLRQ 615


>gi|116517323 olfactory receptor, family 4, subfamily C, member 16
           [Homo sapiens]
          Length = 310

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 136 MYFMTMIVS-----LAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQH 177
           +++MT+I       L AVAWVG  VH+L+  +L ++     P +  H
Sbjct: 128 LHYMTIISQWVCGVLMAVAWVGSCVHSLVQIFLALSLPFCGPNVINH 174


>gi|28395049 mitochondrial COX18 [Homo sapiens]
          Length = 333

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 6   NRSTNLLAAETASLEEQLQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLIIYYLDPS 65
           N ST    +E  S++EQL   G  +L    +   +  W  P  +GV++L+ + I  L   
Sbjct: 190 NLSTGAAHSEGFSVQEQLATGG--ILWFPDLTAPDSTWILPISVGVINLLIVEICALQKI 247

Query: 66  VLSGVSCFVMFL--CLADYLVPILA 88
            +S    ++ +    ++  ++PI A
Sbjct: 248 GMSRFQTYITYFVRAMSVLMIPIAA 272


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,092,739
Number of Sequences: 37866
Number of extensions: 268748
Number of successful extensions: 838
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 835
Number of HSP's gapped (non-prelim): 10
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.