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Search of human proteins with 24234735
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens]
(998 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens] 2048 0.0
gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens] 2039 0.0
gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens] 2037 0.0
gi|24234744 semaphorin 6D isoform 5 precursor [Homo sapiens] 1177 0.0
gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens] 1177 0.0
gi|24234732 semaphorin 6D isoform 6 precursor [Homo sapiens] 976 0.0
gi|11991660 sema domain, transmembrane domain (TM), and cytoplas... 844 0.0
gi|19718780 semaphorin 6B precursor [Homo sapiens] 638 0.0
gi|16306552 semaphorin Y [Homo sapiens] 632 0.0
gi|41406086 semaphorin 3D [Homo sapiens] 313 7e-85
gi|91982767 semaphorin 5B isoform 1 [Homo sapiens] 308 1e-83
gi|5174673 semaphorin 3A precursor [Homo sapiens] 303 5e-82
gi|6912650 semaphorin 3E [Homo sapiens] 299 1e-80
gi|147904700 semaphorin 5A [Homo sapiens] 295 1e-79
gi|188497703 semaphorin 3F [Homo sapiens] 294 2e-79
gi|5454048 semaphorin 3C [Homo sapiens] 290 6e-78
gi|4759092 semaphorin 3B isoform 1 precursor [Homo sapiens] 287 3e-77
gi|54607089 semaphorin 3B isoform 2 precursor [Homo sapiens] 283 4e-76
gi|214010220 semaphorin 4D isoform 2 [Homo sapiens] 281 3e-75
gi|214010218 semaphorin 4D isoform 1 [Homo sapiens] 281 3e-75
gi|157388902 semaphorin 4C [Homo sapiens] 268 2e-71
gi|39777610 semaphorin 4B precursor [Homo sapiens] 260 5e-69
gi|39777608 semaphorin 4B precursor [Homo sapiens] 260 5e-69
gi|9910362 semaphorin sem2 [Homo sapiens] 253 6e-67
gi|21361914 semaphorin B [Homo sapiens] 233 7e-61
gi|19923279 semaphorin W [Homo sapiens] 224 4e-58
gi|28872814 semaphorin 4G [Homo sapiens] 221 2e-57
gi|4504237 semaphorin 7A isoform 1 preproprotein [Homo sapiens] 134 4e-31
gi|225637520 semaphorin 7A isoform 2 preproprotein [Homo sapiens] 133 7e-31
gi|225637524 semaphorin 7A isoform 3 [Homo sapiens] 116 9e-26
>gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens]
Length = 998
Score = 2048 bits (5307), Expect = 0.0
Identities = 998/998 (100%), Positives = 998/998 (100%)
Query: 1 MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ 60
MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ
Sbjct: 1 MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ 60
Query: 61 LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN 120
LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN
Sbjct: 61 LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN 120
Query: 121 FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD 180
FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD
Sbjct: 121 FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD 180
Query: 181 GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI 240
GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI
Sbjct: 181 GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI 240
Query: 241 AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI 300
AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI
Sbjct: 241 AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI 300
Query: 301 TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED 360
TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED
Sbjct: 301 TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED 360
Query: 361 KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR 420
KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR
Sbjct: 361 KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR 420
Query: 421 LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAE 480
LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAE
Sbjct: 421 LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAE 480
Query: 481 NEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGS 540
NEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGS
Sbjct: 481 NEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGS 540
Query: 541 CGRVTPGMLAEGYEQDTEFGNTAHLGDCHGVRWEVQSGESNQMVHMNVLITCVFAAFVLG 600
CGRVTPGMLAEGYEQDTEFGNTAHLGDCHGVRWEVQSGESNQMVHMNVLITCVFAAFVLG
Sbjct: 541 CGRVTPGMLAEGYEQDTEFGNTAHLGDCHGVRWEVQSGESNQMVHMNVLITCVFAAFVLG 600
Query: 601 AFIAGVAVYCYRDMFVRKNRKIHKDAESAQSCTDSSGSFAKLNGLFDSPVKEYQQNIDSP 660
AFIAGVAVYCYRDMFVRKNRKIHKDAESAQSCTDSSGSFAKLNGLFDSPVKEYQQNIDSP
Sbjct: 601 AFIAGVAVYCYRDMFVRKNRKIHKDAESAQSCTDSSGSFAKLNGLFDSPVKEYQQNIDSP 660
Query: 661 KLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALPTPESTPVLHQKTLQAMKSHSEKA 720
KLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALPTPESTPVLHQKTLQAMKSHSEKA
Sbjct: 661 KLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALPTPESTPVLHQKTLQAMKSHSEKA 720
Query: 721 HGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLPNATHDYNTSFSNSNAHKAEKKLQN 780
HGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLPNATHDYNTSFSNSNAHKAEKKLQN
Sbjct: 721 HGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLPNATHDYNTSFSNSNAHKAEKKLQN 780
Query: 781 IDHPLTKSSSKRDHRRSVDSRNTLNDLLKHLNDPNSNPKAIMGDIQMAHQNLMLDPMGSM 840
IDHPLTKSSSKRDHRRSVDSRNTLNDLLKHLNDPNSNPKAIMGDIQMAHQNLMLDPMGSM
Sbjct: 781 IDHPLTKSSSKRDHRRSVDSRNTLNDLLKHLNDPNSNPKAIMGDIQMAHQNLMLDPMGSM 840
Query: 841 SEVPPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMTSLERQRGYHKNSSQRHSIS 900
SEVPPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMTSLERQRGYHKNSSQRHSIS
Sbjct: 841 SEVPPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMTSLERQRGYHKNSSQRHSIS 900
Query: 901 AMPKNLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQPSLSRQSSYTSNG 960
AMPKNLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQPSLSRQSSYTSNG
Sbjct: 901 AMPKNLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQPSLSRQSSYTSNG 960
Query: 961 TLPRTGLKRTPSLKPDVPPKPSFVPQTPSVRPLNKYTY 998
TLPRTGLKRTPSLKPDVPPKPSFVPQTPSVRPLNKYTY
Sbjct: 961 TLPRTGLKRTPSLKPDVPPKPSFVPQTPSVRPLNKYTY 998
>gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens]
Length = 1011
Score = 2039 bits (5283), Expect = 0.0
Identities = 998/1011 (98%), Positives = 998/1011 (98%), Gaps = 13/1011 (1%)
Query: 1 MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ 60
MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ
Sbjct: 1 MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ 60
Query: 61 LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN 120
LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN
Sbjct: 61 LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN 120
Query: 121 FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD 180
FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD
Sbjct: 121 FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD 180
Query: 181 GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI 240
GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI
Sbjct: 181 GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI 240
Query: 241 AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI 300
AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI
Sbjct: 241 AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI 300
Query: 301 TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED 360
TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED
Sbjct: 301 TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED 360
Query: 361 KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR 420
KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR
Sbjct: 361 KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR 420
Query: 421 LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAE 480
LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAE
Sbjct: 421 LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAE 480
Query: 481 NEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGS 540
NEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGS
Sbjct: 481 NEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGS 540
Query: 541 CGRVTPGML-------------AEGYEQDTEFGNTAHLGDCHGVRWEVQSGESNQMVHMN 587
CGRVTPGML AEGYEQDTEFGNTAHLGDCHGVRWEVQSGESNQMVHMN
Sbjct: 541 CGRVTPGMLLLTEDFFAFHNHSAEGYEQDTEFGNTAHLGDCHGVRWEVQSGESNQMVHMN 600
Query: 588 VLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNRKIHKDAESAQSCTDSSGSFAKLNGLFD 647
VLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNRKIHKDAESAQSCTDSSGSFAKLNGLFD
Sbjct: 601 VLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNRKIHKDAESAQSCTDSSGSFAKLNGLFD 660
Query: 648 SPVKEYQQNIDSPKLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALPTPESTPVLHQ 707
SPVKEYQQNIDSPKLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALPTPESTPVLHQ
Sbjct: 661 SPVKEYQQNIDSPKLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALPTPESTPVLHQ 720
Query: 708 KTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLPNATHDYNTSFS 767
KTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLPNATHDYNTSFS
Sbjct: 721 KTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLPNATHDYNTSFS 780
Query: 768 NSNAHKAEKKLQNIDHPLTKSSSKRDHRRSVDSRNTLNDLLKHLNDPNSNPKAIMGDIQM 827
NSNAHKAEKKLQNIDHPLTKSSSKRDHRRSVDSRNTLNDLLKHLNDPNSNPKAIMGDIQM
Sbjct: 781 NSNAHKAEKKLQNIDHPLTKSSSKRDHRRSVDSRNTLNDLLKHLNDPNSNPKAIMGDIQM 840
Query: 828 AHQNLMLDPMGSMSEVPPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMTSLERQR 887
AHQNLMLDPMGSMSEVPPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMTSLERQR
Sbjct: 841 AHQNLMLDPMGSMSEVPPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMTSLERQR 900
Query: 888 GYHKNSSQRHSISAMPKNLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQ 947
GYHKNSSQRHSISAMPKNLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQ
Sbjct: 901 GYHKNSSQRHSISAMPKNLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQ 960
Query: 948 PSLSRQSSYTSNGTLPRTGLKRTPSLKPDVPPKPSFVPQTPSVRPLNKYTY 998
PSLSRQSSYTSNGTLPRTGLKRTPSLKPDVPPKPSFVPQTPSVRPLNKYTY
Sbjct: 961 PSLSRQSSYTSNGTLPRTGLKRTPSLKPDVPPKPSFVPQTPSVRPLNKYTY 1011
>gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens]
Length = 1017
Score = 2037 bits (5277), Expect = 0.0
Identities = 998/1017 (98%), Positives = 998/1017 (98%), Gaps = 19/1017 (1%)
Query: 1 MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ 60
MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ
Sbjct: 1 MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ 60
Query: 61 LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN 120
LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN
Sbjct: 61 LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN 120
Query: 121 FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD 180
FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD
Sbjct: 121 FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD 180
Query: 181 GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI 240
GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI
Sbjct: 181 GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI 240
Query: 241 AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI 300
AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI
Sbjct: 241 AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI 300
Query: 301 TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED 360
TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED
Sbjct: 301 TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED 360
Query: 361 KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR 420
KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR
Sbjct: 361 KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR 420
Query: 421 LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAE 480
LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAE
Sbjct: 421 LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAE 480
Query: 481 NEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGS 540
NEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGS
Sbjct: 481 NEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGS 540
Query: 541 CGRVTPGMLAEGYEQDTEFGNTAHLGDCH-------------------GVRWEVQSGESN 581
CGRVTPGMLAEGYEQDTEFGNTAHLGDCH GVRWEVQSGESN
Sbjct: 541 CGRVTPGMLAEGYEQDTEFGNTAHLGDCHEILPTSTTPDYKIFGGPTSGVRWEVQSGESN 600
Query: 582 QMVHMNVLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNRKIHKDAESAQSCTDSSGSFAK 641
QMVHMNVLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNRKIHKDAESAQSCTDSSGSFAK
Sbjct: 601 QMVHMNVLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNRKIHKDAESAQSCTDSSGSFAK 660
Query: 642 LNGLFDSPVKEYQQNIDSPKLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALPTPES 701
LNGLFDSPVKEYQQNIDSPKLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALPTPES
Sbjct: 661 LNGLFDSPVKEYQQNIDSPKLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALPTPES 720
Query: 702 TPVLHQKTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLPNATHD 761
TPVLHQKTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLPNATHD
Sbjct: 721 TPVLHQKTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLPNATHD 780
Query: 762 YNTSFSNSNAHKAEKKLQNIDHPLTKSSSKRDHRRSVDSRNTLNDLLKHLNDPNSNPKAI 821
YNTSFSNSNAHKAEKKLQNIDHPLTKSSSKRDHRRSVDSRNTLNDLLKHLNDPNSNPKAI
Sbjct: 781 YNTSFSNSNAHKAEKKLQNIDHPLTKSSSKRDHRRSVDSRNTLNDLLKHLNDPNSNPKAI 840
Query: 822 MGDIQMAHQNLMLDPMGSMSEVPPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMT 881
MGDIQMAHQNLMLDPMGSMSEVPPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMT
Sbjct: 841 MGDIQMAHQNLMLDPMGSMSEVPPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMT 900
Query: 882 SLERQRGYHKNSSQRHSISAMPKNLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTP 941
SLERQRGYHKNSSQRHSISAMPKNLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTP
Sbjct: 901 SLERQRGYHKNSSQRHSISAMPKNLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTP 960
Query: 942 VSVHLQPSLSRQSSYTSNGTLPRTGLKRTPSLKPDVPPKPSFVPQTPSVRPLNKYTY 998
VSVHLQPSLSRQSSYTSNGTLPRTGLKRTPSLKPDVPPKPSFVPQTPSVRPLNKYTY
Sbjct: 961 VSVHLQPSLSRQSSYTSNGTLPRTGLKRTPSLKPDVPPKPSFVPQTPSVRPLNKYTY 1017
>gi|24234744 semaphorin 6D isoform 5 precursor [Homo sapiens]
Length = 597
Score = 1177 bits (3046), Expect = 0.0
Identities = 574/585 (98%), Positives = 576/585 (98%), Gaps = 2/585 (0%)
Query: 1 MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ 60
MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ
Sbjct: 1 MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ 60
Query: 61 LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN 120
LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN
Sbjct: 61 LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN 120
Query: 121 FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD 180
FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD
Sbjct: 121 FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD 180
Query: 181 GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI 240
GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI
Sbjct: 181 GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI 240
Query: 241 AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI 300
AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI
Sbjct: 241 AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI 300
Query: 301 TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED 360
TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED
Sbjct: 301 TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED 360
Query: 361 KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR 420
KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR
Sbjct: 361 KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR 420
Query: 421 LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAE 480
LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAE
Sbjct: 421 LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAE 480
Query: 481 NEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGS 540
NEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGS
Sbjct: 481 NEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGS 540
Query: 541 CGRVTPGMLAEGYEQDTEFGNTAHLGDCHGVRWEVQSGESNQMVH 585
CGRVTPGMLAEGYEQDTEFGNTAHLGDCH + EV S MV+
Sbjct: 541 CGRVTPGMLAEGYEQDTEFGNTAHLGDCHDM--EVSSSSVTTMVY 583
>gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens]
Length = 1073
Score = 1177 bits (3045), Expect = 0.0
Identities = 649/1025 (63%), Positives = 725/1025 (70%), Gaps = 107/1025 (10%)
Query: 1 MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ 60
MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ
Sbjct: 1 MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ 60
Query: 61 LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN 120
LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN
Sbjct: 61 LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN 120
Query: 121 FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD 180
FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD
Sbjct: 121 FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD 180
Query: 181 GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI 240
GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI
Sbjct: 181 GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI 240
Query: 241 AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI 300
AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI
Sbjct: 241 AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI 300
Query: 301 TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED 360
TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED
Sbjct: 301 TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED 360
Query: 361 KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR 420
KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR
Sbjct: 361 KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR 420
Query: 421 LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAE 480
LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAE
Sbjct: 421 LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAE 480
Query: 481 NEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGS 540
NEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGS
Sbjct: 481 NEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGS 540
Query: 541 CGRVTPGMLAEGYEQDTEFGNTAHLGDCHGV-------RWEVQSGESNQMVHMNVLITCV 593
CGRVTPGMLAEGYEQDTEFGNTAHLGDCH + +++ G ++ M + +T +
Sbjct: 541 CGRVTPGMLAEGYEQDTEFGNTAHLGDCHEILPTSTTPDYKIFGGPTSDMEVSSSSVTTM 600
Query: 594 FAAFVLGAFIAGVAVYCYRDMFVRKNRKIHKDAESAQSCTDSSGSFAKLNGLFDSPVKEY 653
+ I + +R + + +D + TD L+G+ E
Sbjct: 601 ASI----PEITPKVIDTWRPKLTSSRKFVVQDDPNTSDFTD------PLSGIPKGVRWEV 650
Query: 654 QQNIDSPKLYSNLLTS---------------------------RKELPPNGDTKSMVMDH 686
Q + ++ N+L + +++ + ++ D
Sbjct: 651 QSGESNQMVHMNVLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNRKIHKDAESAQSCTDS 710
Query: 687 RGQPPELAALPTPESTPVLHQKTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSH 746
G +L L +S +Q+ + + K +S SRKE P P+ + H
Sbjct: 711 SGSFAKLNGL--FDSPVKEYQQNIDSPKLYSNLL----TSRKELP---PNGDTKSMVMDH 761
Query: 747 -GHIPSAIVLPNATHDYNTSFSNSNAHKAEKKLQNIDHPLTKSSSKRDHRRSVDSRNTLN 805
G P LP T S H +K LQ + KS S++ H + T
Sbjct: 762 RGQPPELAALP-------TPESTPVLH--QKTLQAM-----KSHSEKAHGHGASRKET-- 805
Query: 806 DLLKHLNDPNSNPKAIMGDIQMAHQNLMLDPMGSMSEVPPKVPNREASLYSPPSTLPRNS 865
P P + ++H ++ + V P + + +S +
Sbjct: 806 --------PQFFPSSPPPHSPLSHGHI------PSAIVLPNATHDYNTSFSNSNAHKAEK 851
Query: 866 PTKRVDVPTTPGVPMTSLERQRGYHKNSSQRHSISAMPKNLNSPNG--VLLSRQPSMNRG 923
+ +D P +T +R + ++ R++++ + K+LN PN + M
Sbjct: 852 KLQNIDHP------LTKSSSKRDHRRSVDSRNTLNDLLKHLNDPNSNPKAIMGDIQMAHQ 905
Query: 924 GYMPTPTGAKVDYIQGTPVSVHLQPSLSRQSS-YTSNGTLPRTGLKRTPSLKPDVPPKPS 982
M P G+ + P +R++S Y+ TLPR +P+ + DVP P
Sbjct: 906 NLMLDPMGSMSEVPPKVP---------NREASLYSPPSTLPR----NSPTKRVDVPTTPG 952
Query: 983 FVPQT 987
VP T
Sbjct: 953 -VPMT 956
Score = 878 bits (2269), Expect = 0.0
Identities = 429/429 (100%), Positives = 429/429 (100%)
Query: 570 GVRWEVQSGESNQMVHMNVLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNRKIHKDAESA 629
GVRWEVQSGESNQMVHMNVLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNRKIHKDAESA
Sbjct: 645 GVRWEVQSGESNQMVHMNVLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNRKIHKDAESA 704
Query: 630 QSCTDSSGSFAKLNGLFDSPVKEYQQNIDSPKLYSNLLTSRKELPPNGDTKSMVMDHRGQ 689
QSCTDSSGSFAKLNGLFDSPVKEYQQNIDSPKLYSNLLTSRKELPPNGDTKSMVMDHRGQ
Sbjct: 705 QSCTDSSGSFAKLNGLFDSPVKEYQQNIDSPKLYSNLLTSRKELPPNGDTKSMVMDHRGQ 764
Query: 690 PPELAALPTPESTPVLHQKTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHI 749
PPELAALPTPESTPVLHQKTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHI
Sbjct: 765 PPELAALPTPESTPVLHQKTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHI 824
Query: 750 PSAIVLPNATHDYNTSFSNSNAHKAEKKLQNIDHPLTKSSSKRDHRRSVDSRNTLNDLLK 809
PSAIVLPNATHDYNTSFSNSNAHKAEKKLQNIDHPLTKSSSKRDHRRSVDSRNTLNDLLK
Sbjct: 825 PSAIVLPNATHDYNTSFSNSNAHKAEKKLQNIDHPLTKSSSKRDHRRSVDSRNTLNDLLK 884
Query: 810 HLNDPNSNPKAIMGDIQMAHQNLMLDPMGSMSEVPPKVPNREASLYSPPSTLPRNSPTKR 869
HLNDPNSNPKAIMGDIQMAHQNLMLDPMGSMSEVPPKVPNREASLYSPPSTLPRNSPTKR
Sbjct: 885 HLNDPNSNPKAIMGDIQMAHQNLMLDPMGSMSEVPPKVPNREASLYSPPSTLPRNSPTKR 944
Query: 870 VDVPTTPGVPMTSLERQRGYHKNSSQRHSISAMPKNLNSPNGVLLSRQPSMNRGGYMPTP 929
VDVPTTPGVPMTSLERQRGYHKNSSQRHSISAMPKNLNSPNGVLLSRQPSMNRGGYMPTP
Sbjct: 945 VDVPTTPGVPMTSLERQRGYHKNSSQRHSISAMPKNLNSPNGVLLSRQPSMNRGGYMPTP 1004
Query: 930 TGAKVDYIQGTPVSVHLQPSLSRQSSYTSNGTLPRTGLKRTPSLKPDVPPKPSFVPQTPS 989
TGAKVDYIQGTPVSVHLQPSLSRQSSYTSNGTLPRTGLKRTPSLKPDVPPKPSFVPQTPS
Sbjct: 1005 TGAKVDYIQGTPVSVHLQPSLSRQSSYTSNGTLPRTGLKRTPSLKPDVPPKPSFVPQTPS 1064
Query: 990 VRPLNKYTY 998
VRPLNKYTY
Sbjct: 1065 VRPLNKYTY 1073
>gi|24234732 semaphorin 6D isoform 6 precursor [Homo sapiens]
Length = 476
Score = 976 bits (2522), Expect = 0.0
Identities = 476/476 (100%), Positives = 476/476 (100%)
Query: 1 MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ 60
MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ
Sbjct: 1 MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ 60
Query: 61 LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN 120
LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN
Sbjct: 61 LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN 120
Query: 121 FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD 180
FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD
Sbjct: 121 FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD 180
Query: 181 GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI 240
GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI
Sbjct: 181 GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI 240
Query: 241 AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI 300
AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI
Sbjct: 241 AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI 300
Query: 301 TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED 360
TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED
Sbjct: 301 TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED 360
Query: 361 KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR 420
KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR
Sbjct: 361 KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR 420
Query: 421 LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAK 476
LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAK
Sbjct: 421 LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAK 476
>gi|11991660 sema domain, transmembrane domain (TM), and cytoplasmic
domain, (semaphorin) 6A [Homo sapiens]
Length = 1030
Score = 844 bits (2181), Expect = 0.0
Identities = 481/1065 (45%), Positives = 634/1065 (59%), Gaps = 124/1065 (11%)
Query: 8 AYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRG-RPSGNESQ-HRLDFQLMLKI 65
A +L + FPED EP++ +Y++QYPVF G +P N +Q HRLD Q+++ +
Sbjct: 5 ALLLYFTLLHFAGAGFPEDSEPISISHGNYTKQYPVFVGHKPGRNTTQRHRLDIQMIMIM 64
Query: 66 RDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHNFIKVF 125
TLYIA RD +YTV+++ E+ +KKLTW+SRQ D + C MKGKHKDECHNFIKV
Sbjct: 65 NGTLYIAARDHIYTVDIDTSHTEEIYCSKKLTWKSRQADVDTCRMKGKHKDECHNFIKVL 124
Query: 126 VPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFADGKLYS 185
+ +ND+ +FVCGTNAFNP CR Y++ TLE G+E SG+ARCP+DA+ NVALFADGKLYS
Sbjct: 125 LKKNDDALFVCGTNAFNPSCRNYKMDTLEPFGDEFSGMARCPYDAKHANVALFADGKLYS 184
Query: 186 ATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHN 245
ATV DFLA DAVIYRS+G+ LRT+K+DSKW+KEP+F+ A++YG+Y+YFFFREIAVE+N
Sbjct: 185 ATVTDFLAIDAVIYRSLGESPTLRTVKHDSKWLKEPYFVQAVDYGDYIYFFFREIAVEYN 244
Query: 246 NLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSITDIIQ 305
+GK V+ RVA++CKNDMGGSQRVLEK WTSFLKARLNCSVPGDS FYF++LQ++TD+I+
Sbjct: 245 TMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPGDSHFYFNILQAVTDVIR 304
Query: 306 INGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKP 365
ING V+ F+T NSIPGSAVCA+ M DI VF GRFKEQK+PDS WT VP+++VPKP
Sbjct: 305 INGRDVVLATFSTPYNSIPGSAVCAYDMLDIASVFTGRFKEQKSPDSTWTPVPDERVPKP 364
Query: 366 RPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYRLTAIS 425
RPGCCA E Y TS +FPD+TL+FIK+HPLMD AVP I + PWF +T VRYRLT I+
Sbjct: 365 RPGCCAGSSSLERYATSNEFPDDTLNFIKTHPLMDEAVPSIFNRPWFLRTMVRYRLTKIA 424
Query: 426 VDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFS-LNDSVLLEEIEAYNHAKCSAENEED 484
VD +AGPYQN+TV+F+GSE G++LK LA+ LNDS+ LEE+ YN KCS + ED
Sbjct: 425 VDTAAGPYQNHTVVFLGSEKGIILKFLARIGNSGFLNDSLFLEEMSVYNSEKCSYDGVED 484
Query: 485 KKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQG-SCGR 543
K+++ +QLD+ +LYVAFS+C+I++PL RCER+G CKK+CIASRDPYCGW+ +G +C
Sbjct: 485 KRIMGMQLDRASSSLYVAFSTCVIKVPLGRCERHGKCKKTCIASRDPYCGWIKEGGACSH 544
Query: 544 V----------------TPGM---------------------------LAEGYEQDTEFG 560
+ T G+ EGYE
Sbjct: 545 LSPNSRLTFEQDIERGNTDGLGDCHNSFVALNGHSSSLLPSTTTSDSTAQEGYESRGGML 604
Query: 561 NTAHLGDC------------------HGVRWEVQSGESNQMVHMNVLITCVFAAFVLGAF 602
+ HL D GV E +Q+V + +L V AFV+GA
Sbjct: 605 DWKHLLDSPDSTDPLGAVSSHNHQDKKGVIRESYLKGHDQLVPVTLLAIAVILAFVMGAV 664
Query: 603 IAGVAVYCYRDMFVRKNRKI--HKDAESAQSCTDSSGSFAKLNGLFDSPVKEYQQNIDSP 660
+G+ VYC D RK+ + K+ E S S S KL+GLF + Q P
Sbjct: 665 FSGITVYCVCD-HRRKDVAVVQRKEKELTHSRRGSMSSVTKLSGLFG----DTQSKDPKP 719
Query: 661 KLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALPTPESTPVLHQKTLQAMKSHSEKA 720
+ L +L G+T M++ +L ALPTPESTP L QK + S +
Sbjct: 720 EAILTPLMHNGKLATPGNTAKMLIKADQHHLDLTALPTPESTPTLQQKRKPSRGSREWER 779
Query: 721 HGH--GASRKETPQFFPSSPPPHSPL--SHGHIPSAIVLPNATHDYNTSFSNSNAHKAEK 776
+ + A K+ P P PL S HIPS +VLP Y +
Sbjct: 780 NQNLINACTKDMPPMGSPVIPTDLPLRASPSHIPSVVVLPITQQGYQHEY---------- 829
Query: 777 KLQNIDHPLTKSSSKRDHRRSVDSRNTLNDLLKHLNDPNSNPKAIMGDIQMAHQNLMLDP 836
+D P + S ++ L D L K I + N ++
Sbjct: 830 ----VDQP----------KMSEVAQMALEDQAATL-----EYKTIKEHLSSKSPNHGVNL 870
Query: 837 MGSMSEVPPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMTSLERQRGYHKNSSQR 896
+ ++ +PPKVP REASL P ++L + +KR+++ + ++ +R Y NS R
Sbjct: 871 VENLDSLPPKVPQREASLGPPGASLSQTGLSKRLEMHHSSSY---GVDYKRSYPTNSLTR 927
Query: 897 -HSISAMPK-NLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQ-------GTPVSVHLQ 947
H + + + N NS N LSR S RG P P +VD IQ G V+V Q
Sbjct: 928 SHQATTLKRNNTNSSNSSHLSRNQSFGRGD-NPPPAPQRVDSIQVHSSQPSGQAVTVSRQ 986
Query: 948 PSLSRQSSYTSNGTLPRTGLKRTPSLKPDVPPKPSFVPQTPSVRP 992
PSL+ +S T R+GLKRTPSLKPDVPPKPSF P + S++P
Sbjct: 987 PSLNAYNSLT------RSGLKRTPSLKPDVPPKPSFAPLSTSMKP 1025
>gi|19718780 semaphorin 6B precursor [Homo sapiens]
Length = 888
Score = 638 bits (1646), Expect = 0.0
Identities = 347/780 (44%), Positives = 472/780 (60%), Gaps = 49/780 (6%)
Query: 8 AYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGN----ESQHRLDFQLML 63
A +LLL++ FPE+ PL+ Y YPVF G G E L+ Q +L
Sbjct: 12 ALLLLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYPVFVGSGPGRLTPAEGADDLNIQRVL 71
Query: 64 KIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHNFIK 123
++ TL+I RD +Y V L TE+ +KLTWRS D C MKGK + EC NF+K
Sbjct: 72 RVNRTLFIGDRDNLYRVELEPPTSTELRYQRKLTWRSNPSDINVCRMKGKQEGECRNFVK 131
Query: 124 VFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFADGKL 183
V + R++ +FVCG+NAFNP+C Y + TL+ G+ ISG+ARCP+D + NVALF+DG L
Sbjct: 132 VLLLRDESTLFVCGSNAFNPVCANYSIDTLQPVGDNISGMARCPYDPKHANVALFSDGML 191
Query: 184 YSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREIAVE 243
++ATV DFLA DAVIYRS+GD LRT+K+DSKW KEP+F+HA+E+G++VYFFFREIA+E
Sbjct: 192 FTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWFKEPYFVHAVEWGSHVYFFFREIAME 251
Query: 244 HNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSITDI 303
N L K V SRVAR+CKND+GGS RVLEK WTSFLKARLNCSVPGDS FYF+VLQ++T +
Sbjct: 252 FNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFLKARLNCSVPGDSHFYFNVLQAVTGV 311
Query: 304 IQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVP 363
+ + G P V+ VF+T NSIPGSAVCAF + + VF+GRF+EQK+P+S+WT VPED+VP
Sbjct: 312 VSLGGRPVVLAVFSTPSNSIPGSAVCAFDLTQVAAVFEGRFREQKSPESIWTPVPEDQVP 371
Query: 364 KPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYRLTA 423
+PRPGCCA G+ Y S PD+ L+F+K+HPLMD AVP + PW +T +R++LT
Sbjct: 372 RPRPGCCAAPGM--QYNASSALPDDILNFVKTHPLMDEAVPSLGHAPWILRTLMRHQLTR 429
Query: 424 ISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLND---SVLLEEIEAYNHAKCS-- 478
++VD AGP+ N TV+F+GSEAG VLK L + + + SV LEE E Y +C
Sbjct: 430 VAVDVGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTSGTSGLSVFLEEFETYRPDRCGRP 489
Query: 479 AENEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQ 538
E ++++SL+LD L AF C++R+P++RC++Y C K+CI S+DPYCGW
Sbjct: 490 GGGETGQRLLSLELDAASGGLLAAFPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPD 549
Query: 539 GSCGRVTPGMLAEGYEQDTEFGNTAHLGDCHGVRWEVQSGESNQMVHMNVLITCVFAAFV 598
GSC ++PG A +EQD +T+ LGDC G+ S + +V +N+L+T AAFV
Sbjct: 550 GSCIFLSPGTRA-AFEQDVSGASTSGLGDCTGLLRASLSEDRAGLVSVNLLVTSSVAAFV 608
Query: 599 LGAFIAGVAVYCYRDMFVRKNRKIHKDAES--AQSCTDSSGSFAKLNGLFDSPVKEYQQN 656
+GA ++G +V + + R+ KD E+ A ++ S ++L ++
Sbjct: 609 VGAVVSGFSVGWFVGLRERRELARRKDKEAILAHGAGEAVLSVSRLG----------ERR 658
Query: 657 IDSPKLYSNLLTSRKELPP---------NGDTKSMVMDHRGQPPELAALPTPESTPVLHQ 707
P +PP NG K+ ++ + LPTPE TP L Q
Sbjct: 659 AQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSGLLPTPEQTP-LPQ 717
Query: 708 KTLQAMKSHSEKA------HGH---GASRKET-----PQFFPSSPP-PHSPLSHGHIPSA 752
K L H HGH AS + P P PP P P G + +A
Sbjct: 718 KRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLLAPARAPEQPPAPGEPTPDGRLYAA 777
>gi|16306552 semaphorin Y [Homo sapiens]
Length = 930
Score = 632 bits (1631), Expect = 0.0
Identities = 349/773 (45%), Positives = 481/773 (62%), Gaps = 54/773 (6%)
Query: 4 FLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRG-RPSGNESQHRLDFQLM 62
F+ +LLL+ +FP+D PL D + FRG ++ LDFQ
Sbjct: 7 FMPLLLLLLLLSLPHTQAAFPQDPLPLLISDLQGTSPLSWFRGLEDDAVAAELGLDFQRF 66
Query: 63 LKIRDTLYIAGRDQVYTVNLNEMPKTE-VIPNKKLTWRSRQQDRENCAMKGKHKDECHNF 121
L + TL +A RD V++ +L + E ++PNK LTWRS QD ENCA++GK DEC+N+
Sbjct: 67 LTLNRTLLVAARDHVFSFDLQAEEEGEGLVPNKYLTWRS--QDVENCAVRGKLTDECYNY 124
Query: 122 IKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFADG 181
I+V VP + + + CGTN+F+P+CR Y +++L+ +GEE+SG ARCPFDA Q+NVA+FA+G
Sbjct: 125 IRVLVPWDSQTLLACGTNSFSPVCRSYGITSLQQEGEELSGQARCPFDATQSNVAIFAEG 184
Query: 182 KLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREIA 241
LYSAT ADF ASDAV+YRS+G LR+ KYDSKW++EPHF+ A+E+G++VYFFFRE++
Sbjct: 185 SLYSATAADFQASDAVVYRSLGPQPPLRSAKYDSKWLREPHFVQALEHGDHVYFFFREVS 244
Query: 242 VEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSIT 301
VE LG+ +SRVAR+CK DMGGS R L++HWTSFLK RLNCSVPGDS FYFDVLQ++T
Sbjct: 245 VEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQALT 304
Query: 302 DIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPEDK 361
+ ++G + GVFTTQ NSIPGSAVCAF +D+IE+ F+G+FKEQ++ D WT V ED+
Sbjct: 305 GPVNLHGRSALFGVFTTQTNSIPGSAVCAFYLDEIERGFEGKFKEQRSLDGAWTPVSEDR 364
Query: 362 VPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYRL 421
VP PRPG CA G A + +S D PD+ L+FIK+HPL+D AVPP+ +P T T R L
Sbjct: 365 VPSPRPGSCAGVGGAALFSSSRDLPDDVLTFIKAHPLLDPAVPPVTHQPLLTLTS-RALL 423
Query: 422 TAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAEN 481
T ++VD AGP+ N TV+F+GS G VLKVL + +LLEEI+AY+ A+CS +
Sbjct: 424 TQVAVDGMAGPHSNITVMFLGSNDGTVLKVLTPGGRSGGPEPILLEEIDAYSPARCSGKR 483
Query: 482 --EEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQG 539
+ +++I L+LD + H L+VAFS CI+ +PLSRC R+G+C++SC+AS+DPYCGW S
Sbjct: 484 TAQTARRIIGLELDTEGHRLFVAFSGCIVYLPLSRCARHGACQRSCLASQDPYCGWHSSR 543
Query: 540 SCGRV------------TPGMLAEGYEQDTEFGNTAHLGD-CHGVRWEVQSGESNQMVHM 586
C + + G QD G+ + GD +GVR ++ +++ V +
Sbjct: 544 GCVDIRGSGGTDVDQAGNQESMEHGDCQDGATGSQSGPGDSAYGVRRDLPPASASRSVPI 603
Query: 587 NVLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNRKIHKDAESAQSCTD-SSGSFAKLNGL 645
+L+ V AAF LGA ++G+ V C R +R+ KD E+ S S A+L+G
Sbjct: 604 PLLLASVAAAFALGASVSGLLVSC---ACRRAHRRRGKDIETPGLPRPLSLRSLARLHGG 660
Query: 646 FDSPVKEYQQN--IDSPKLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALPTPESTP 703
P + + +P+LY+ L PP G PPELA LPTPESTP
Sbjct: 661 GPEPPPPSKDGDAVQTPQLYTTFLP-----PPEG----------VPPPELACLPTPESTP 705
Query: 704 VLHQKTLQA-------------MKSHSEKAHGHGASRKETPQFFPSSPPPHSP 743
L K L+A K ++ G A+ P+ PPP P
Sbjct: 706 ELPVKHLRAAGDPWEWNQNRNNAKEGPGRSRGGHAAGGPAPRVLVRPPPPGCP 758
>gi|41406086 semaphorin 3D [Homo sapiens]
Length = 777
Score = 313 bits (801), Expect = 7e-85
Identities = 190/565 (33%), Positives = 290/565 (51%), Gaps = 45/565 (7%)
Query: 53 SQHRLDFQLML--KIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAM 110
S LDFQ +L + R L + +D ++ ++L ++ K KK+ W + ++ E C +
Sbjct: 64 SSEGLDFQTLLLDEERGRLLLGAKDHIFLLSLVDLNKNF----KKIYWPAAKERVELCKL 119
Query: 111 KGKHKD-ECHNFIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYD-------GEEISG 162
GK + EC NFI+V P N ++VCGT AF+P+C Y L + D SG
Sbjct: 120 AGKDANTECANFIRVLQPYNKTHIYVCGTGAFHPICGYIDLGVYKEDIIFKLDTHNLESG 179
Query: 163 LARCPFDARQTNVALFADGKLYSATVADFLASDAVIYRSMG---DGSALRTIKYDSKWIK 219
+CPFD +Q ++ D LYS T +DFL D RS+G D +RT + W+
Sbjct: 180 RLKCPFDPQQPFASVMTDEYLYSGTASDFLGKDTAFTRSLGPTHDHHYIRTDISEHYWLN 239
Query: 220 EPHFLHAIEY-------GNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEK 272
F+ + +YFFFRE + E + K + SRV R+CKND+GG + ++ K
Sbjct: 240 GAKFIGTFFIPDTYNPDDDKIYFFFRESSQEGSTSDKTILSRVGRVCKNDVGGQRSLINK 299
Query: 273 HWTSFLKARLNCSVPGD--SFFYFDVLQSITDI-IQINGIPTVVGVFTTQLNSIPGSAVC 329
WT+FLKARL CS+PG + YFD LQ I + + P V GVFTT + GSAVC
Sbjct: 300 -WTTFLKARLICSIPGSDGADTYFDELQDIYLLPTRDERNPVVYGVFTTTSSIFKGSAVC 358
Query: 330 AFSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDET 389
+SM DI VF G + +++ D W + ++P PRPG C K++ DFPD+
Sbjct: 359 VYSMADIRAVFNGPYAHKESADHRWVQY-DGRIPYPRPGTCPSKTYDPLIKSTRDFPDDV 417
Query: 390 LSFIKSHPLMDSAVPPIADEPWFTKTRVRYRLTAISVDHSAGPYQNYTVIFVGSEAGMVL 449
+SFIK H +M +V P+A P F + V YRLT I VDH Y V+F+G++ G VL
Sbjct: 418 ISFIKRHSVMYKSVYPVAGGPTFKRINVDYRLTQIVVDHVIAEDGQYDVMFLGTDIGTVL 477
Query: 450 KVLAKTSPFSLNDSVLLEEIEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCIIR 509
KV++ + + V+LEE++ + H+ +++++L LY+ +++
Sbjct: 478 KVVSISKEKWNMEEVVLEELQIFKHSSI---------ILNMELSLKQQQLYIGSRDGLVQ 528
Query: 510 IPLSRCERYGSCKKSCIASRDPYCGWLSQGSCGRVTPGMLAEGYEQDTEFGNTAHLGDCH 569
+ L RC+ YG C +RDPYC W +C R P QD ++G+ + C
Sbjct: 529 LSLHRCDTYGKACADCCLARDPYCAW-DGNACSRYAPTSKRRARRQDVKYGDP--ITQC- 584
Query: 570 GVRWEVQSGESNQMVHMNVLITCVF 594
W+++ S++ V+ F
Sbjct: 585 ---WDIEDSISHETADEKVIFGIEF 606
>gi|91982767 semaphorin 5B isoform 1 [Homo sapiens]
Length = 1151
Score = 308 bits (790), Expect = 1e-83
Identities = 191/525 (36%), Positives = 297/525 (56%), Gaps = 47/525 (8%)
Query: 12 LLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQLMLKIRDTLYI 71
L +S+ V+F + ++ Y +R + PSGN QL++ R+ L+
Sbjct: 97 LCALSKHPTVAFEDLQPWVSNFTYPGARDFSQLALDPSGN--------QLIVGARNYLF- 147
Query: 72 AGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHNFIKVFVPRNDE 131
++ N++ + TE W S + R +C KGK ++EC N+++V + +
Sbjct: 148 ----RLSLANVSLLQATE--------WASSEDTRRSCQSKGKTEEECQNYVRVLIVAGRK 195
Query: 132 MVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD-GKLYSATVAD 190
VF+CGTNAF+PMC ++ L E+I+G+ARCP+D R + A+ + G+LY+ATV D
Sbjct: 196 -VFMCGTNAFSPMCTSRQVGNLSRTIEKINGVARCPYDPRHNSTAVISSQGELYAATVID 254
Query: 191 FLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNLGKA 250
F D IYRS+G G LRT +Y+SKW+ EP+F+ A + G + YFF RE AVEH + G+
Sbjct: 255 FSGRDPAIYRSLGSGPPLRTAQYNSKWLNEPNFVAAYDIGLFAYFFLRENAVEH-DCGRT 313
Query: 251 VYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSITDIIQINGIP 310
VYSRVAR+CKND+GG + +LE WT+F+KARLNCS PG+ FY++ LQS + + +
Sbjct: 314 VYSRVARVCKNDVGG-RFLLEDTWTTFMKARLNCSRPGEVPFYYNELQSAFHLPEQD--- 369
Query: 311 TVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCC 370
+ GVFTT +NSI SAVCAF++ I + F G F+ Q+ P + W + + +P + G
Sbjct: 370 LIYGVFTTNVNSIAASAVCAFNLSAISQAFNGPFRYQENPRAAWLPI-ANPIPNFQCGTL 428
Query: 371 AKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYRLTAISVDHSA 430
+ G E + + +L + LM AV P+ EP T+ VR+ + + VD
Sbjct: 429 PETGPNE------NLTERSLQDAQRLFLMSEAVQPVTPEPCVTQDSVRF--SHLVVDLVQ 480
Query: 431 GPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAENEEDKKVISL 490
Y V+++G+E+G +LK L+ T+ SL+ LEE+ + + + SL
Sbjct: 481 AKDTLYHVLYIGTESGTILKALS-TASRSLH-GCYLEELHVLPPGR-------REPLRSL 531
Query: 491 QLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGW 535
++ AL+V ++R+PL RC Y S + +C+ +RDPYCGW
Sbjct: 532 RILHSARALFVGLRDGVLRVPLERCAAYRS-QGACLGARDPYCGW 575
>gi|5174673 semaphorin 3A precursor [Homo sapiens]
Length = 771
Score = 303 bits (776), Expect = 5e-82
Identities = 184/529 (34%), Positives = 276/529 (52%), Gaps = 48/529 (9%)
Query: 66 RDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKH-KDECHNFIKV 124
R LY+ +D +++ +L + +K+ W R+ C GK EC NFIKV
Sbjct: 66 RSRLYVGAKDHIFSFDL-----VNIKDFQKIVWPVSYTRRDECKWAGKDILKECANFIKV 120
Query: 125 FVPRNDEMVFVCGTNAFNPMCRYYRLS--------TLEYDGEEISGLARCPFDARQTNVA 176
N ++ CGT AF+P+C Y + LE E +G + P+D + +
Sbjct: 121 LKAYNQTHLYACGTGAFHPICTYIEIGHHPEDNIFKLENSHFE-NGRGKSPYDPKLLTAS 179
Query: 177 LFADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFL--HAIEYG---- 230
L DG+LYS T ADF+ D I+R++G +RT ++DS+W+ +P F+ H I
Sbjct: 180 LLIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPKFISAHLISESDNPE 239
Query: 231 -NYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGD 289
+ VYFFFRE A++ + GKA ++R+ +ICKND GG + ++ K WT+FLKARL CSVPG
Sbjct: 240 DDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNK-WTTFLKARLICSVPGP 298
Query: 290 SFF--YFDVLQSITDIIQIN----GIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGR 343
+ +FD LQ D+ +N P V GVFTT N GSAVC +SM D+ +VF G
Sbjct: 299 NGIDTHFDELQ---DVFLMNFKDPKNPVVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGP 355
Query: 344 FKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAV 403
+ + P+ W + +VP PRPG C + ++ D PD+ ++F +SHP M + V
Sbjct: 356 YAHRDGPNYQWVPY-QGRVPYPRPGTCPSKTFG-GFDSTKDLPDDVITFARSHPAMYNPV 413
Query: 404 PPIADEPWFTKTRVRYRLTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLA--KTSPFSLN 461
P+ + P KT V Y+ T I VD Y V+F+G++ G VLKV++ K + + L
Sbjct: 414 FPMNNRPIVIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSIPKETWYDL- 472
Query: 462 DSVLLEEIEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSC 521
+ VLLEE+ + E + +++L LY+ ++ + ++PL RC+ YG
Sbjct: 473 EEVLLEEMTVF---------REPTAISAMELSTKQQQLYIGSTAGVAQLPLHRCDIYGKA 523
Query: 522 KKSCIASRDPYCGWLSQGSCGRVTPGMLAEGYEQDTEFGN-TAHLGDCH 569
C +RDPYC W +C R P QD G+ H D H
Sbjct: 524 CAECCLARDPYCAW-DGSACSRYFPTAKRRTRRQDIRNGDPLTHCSDLH 571
>gi|6912650 semaphorin 3E [Homo sapiens]
Length = 775
Score = 299 bits (765), Expect = 1e-80
Identities = 186/538 (34%), Positives = 277/538 (51%), Gaps = 43/538 (7%)
Query: 57 LDFQLML--KIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKH 114
LD ML + ++ L++ GRD VY+++L + K++ W S E C MKGK
Sbjct: 56 LDLHTMLLDEYQERLFVGGRDLVYSLSLERISDGY----KEIHWPSTALKMEECIMKGKD 111
Query: 115 KDECHNFIKVFVPRNDEMVFVCGTNAFNPMCRYYR--------LSTLEYDGEEISGLARC 166
EC N+++V N + CGT AF+P+C + R L LE E G RC
Sbjct: 112 AGECANYVRVLHHYNRTHLLTCGTGAFDPVCAFIRVGYHLEDPLFHLESPRSE-RGRGRC 170
Query: 167 PFDARQTNVALFADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHA 226
PFD + ++ +L++ +D+ + DA I+RSMG + +RT D + +KEP F+ +
Sbjct: 171 PFDPSSSFISTLIGSELFAGLYSDYWSRDAAIFRSMGRLAHIRTEHDDERLLKEPKFVGS 230
Query: 227 IEY-------GNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLK 279
N VYFFF E A+E N A+Y+RV R+C ND+GG QR+L W++FLK
Sbjct: 231 YMIPDNEDRDDNKVYFFFTEKALEAENNAHAIYTRVGRLCVNDVGG-QRILVNKWSTFLK 289
Query: 280 ARLNCSVPGDSFF--YFDVLQSITDI-IQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDI 336
ARL CSVPG + YFD L+ + + + + P + G+F T N G A+C + M I
Sbjct: 290 ARLVCSVPGMNGIDTYFDELEDVFLLPTRDHKNPVIFGLFNTTSNIFRGHAICVYHMSSI 349
Query: 337 EKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSH 396
F G + ++ P+ W+ V E KVP PRPG CA Y T+ D+PD+ + F +SH
Sbjct: 350 RAAFNGPYAHKEGPEYHWS-VYEGKVPYPRPGSCASKVNGGRYGTTKDYPDDAIRFARSH 408
Query: 397 PLMDSAVPPIADEPWFTKTRVRYRLTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLA-KT 455
PLM A+ P +P KT +Y L I+VD Y V+F+G++ G+VLKV+
Sbjct: 409 PLMYQAIKPAHKKPILVKTDGKYNLKQIAVDRVEAEDGQYDVLFIGTDNGIVLKVITIYN 468
Query: 456 SPFSLNDSVLLEEIEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRC 515
+ V+LEE++ + ++ +IS+++ LY+ +S + ++ C
Sbjct: 469 QEMESMEEVILEELQIF---------KDPVPIISMEISSKRQQLYIGSASAVAQVRFHHC 519
Query: 516 ERYGSCKKSCIASRDPYCGWLSQGSCGRVTP-GMLAEG--YEQDTEFGNTAHLGDCHG 570
+ YGS C +RDPYC W SC R P G A+ QD GN A C G
Sbjct: 520 DMYGSACADCCLARDPYCAW-DGISCSRYYPTGTHAKRRFRRQDVRHGNAAQ--QCFG 574
>gi|147904700 semaphorin 5A [Homo sapiens]
Length = 1074
Score = 295 bits (755), Expect = 1e-79
Identities = 172/469 (36%), Positives = 260/469 (55%), Gaps = 34/469 (7%)
Query: 69 LYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHNFIKVFVPR 128
L + R+ ++ + L ++ + + W + ++ C KGK K+EC N+I+V +
Sbjct: 70 LVVGARNYLFRLQLEDLSLIQAVE-----WECDEATKKACYSKGKSKEECQNYIRVLLVG 124
Query: 129 NDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALF-ADGKLYSAT 187
D + F CGTNAF P+C LS L ++ISG+ARCP+ + + AL A G+LY+AT
Sbjct: 125 GDRL-FTCGTNAFTPVCTNRSLSNLTEIHDQISGMARCPYSPQHNSTALLTAGGELYAAT 183
Query: 188 VADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNL 247
DF D IYRS+G LRT +Y+SKW+ EP+F+ + + GN+ YFFFRE AVEH +
Sbjct: 184 AMDFPGRDPAIYRSLGILPPLRTAQYNSKWLNEPNFVSSYDIGNFTYFFFRENAVEH-DC 242
Query: 248 GKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSITDIIQIN 307
GK V+SR AR+CKND+GG + +LE WT+F+KARLNCS PG+ FY++ LQS + +++
Sbjct: 243 GKTVFSRAARVCKNDIGG-RFLLEDTWTTFMKARLNCSRPGEVPFYYNELQSTFFLPELD 301
Query: 308 GIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRP 367
+ G+FTT +NSI SAVC F++ I + F G FK Q+ S W P P P
Sbjct: 302 ---LIYGIFTTNVNSIAASAVCVFNLSAIAQAFSGPFKYQENSRSAWLPYPN---PNPHF 355
Query: 368 GC-CAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYRLTAISV 426
C GL ++ + L + LM V P+ P F + R+ + ++V
Sbjct: 356 QCGTVDQGL------YVNLTERNLQDAQKFILMHEVVQPVTTVPSFMEDNSRF--SHVAV 407
Query: 427 DHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAENEEDKK 486
D G +I++ ++ G + KV + S S LLEEIE + +
Sbjct: 408 DVVQGREALVHIIYLATDYGTIKKVRVPLNQTS--SSCLLEEIELF-------PERRREP 458
Query: 487 VISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGW 535
+ SLQ+ L+V +++IPL RC+ Y + + +CI ++DPYCGW
Sbjct: 459 IRSLQILHSQSVLFVGLREHVVKIPLKRCQFYRT-RSTCIGAQDPYCGW 506
>gi|188497703 semaphorin 3F [Homo sapiens]
Length = 785
Score = 294 bits (753), Expect = 2e-79
Identities = 182/566 (32%), Positives = 285/566 (50%), Gaps = 74/566 (13%)
Query: 58 DFQLMLKIRD--TLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHK 115
D++++LK D +Y+ +D V +++L+++ + +I + W + Q E C + GK
Sbjct: 56 DYRILLKDEDHDRMYVGSKDYVLSLDLHDINREPLI----IHWAASPQRIEECVLSGKDV 111
Query: 116 D-ECHNFIKVFVPRNDEMVFVCGTNAFNPMCRYYR------------------------- 149
+ EC NF+++ P N ++VCGT A+NPMC Y
Sbjct: 112 NGECGNFVRLIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQATPWTQTQAVRGRGSRATD 171
Query: 150 --------------LSTLEYDGEEISGLARCPFDARQTNVALFADGKLYSATVADFLASD 195
+ LE + E SG +CP+D + + + +LY+ DF+ +D
Sbjct: 172 GALRPMPTAPRQDYIFYLEPERLE-SGKGKCPYDPKLDTASALINEELYAGVYIDFMGTD 230
Query: 196 AVIYRSMGDGSALRTIKYDSKWIKEPHFLHAI-------EYGNYVYFFFREIAVEHNNLG 248
A I+R++G +A+RT +Y+S+W+ +P F+HA + +YFFFRE + E
Sbjct: 231 AAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERNDDKLYFFFRERSAEAPQ-S 289
Query: 249 KAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFF--YFDVLQSITDIIQI 306
AVY+R+ RIC ND GG ++ K W++FLKARL CSVPG+ +FD LQ + + Q
Sbjct: 290 PAVYARIGRICLNDDGGHCCLVNK-WSTFLKARLVCSVPGEDGIETHFDELQDVF-VQQT 347
Query: 307 NGI--PTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPK 364
+ P + VFT+ + GSAVC +SM DI VF G F ++ P+ W K+P
Sbjct: 348 QDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKEGPNYQWMPF-SGKMPY 406
Query: 365 PRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYRLTAI 424
PRPG C + K++ D+PDE ++F++SHPLM AV P+ P +T YRLT I
Sbjct: 407 PRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRRPLVVRTGAPYRLTTI 466
Query: 425 SVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAENEED 484
+VD Y V+F+G++ G V KV+ + ++LEE+E + ++
Sbjct: 467 AVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQELEELMLEEVEVF---------KDP 517
Query: 485 KKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGSCGRV 544
V ++ + LYVA + + + L RC+ YG+ C +RDPYC W Q +C R
Sbjct: 518 APVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ-ACSRY 576
Query: 545 TPGMLAEGYEQDTEFGNTAHLGDCHG 570
T QD GN + C G
Sbjct: 577 TASSKRRSRRQDVRHGNP--IRQCRG 600
>gi|5454048 semaphorin 3C [Homo sapiens]
Length = 751
Score = 290 bits (741), Expect = 6e-78
Identities = 174/538 (32%), Positives = 283/538 (52%), Gaps = 39/538 (7%)
Query: 53 SQHRLDFQLML--KIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAM 110
S H LD++++L + +D +Y+ +D + ++N+N + + + + W + E C M
Sbjct: 48 SHHPLDYRILLMDEDQDRIYVGSKDHILSLNINNISQEAL----SVFWPASTIKVEECKM 103
Query: 111 KGKHKDE-CHNFIKVFVPRNDEMVFVCGTNAFNPMCRYYRLS------TLEYDGEEISGL 163
GK C NF++V N ++VCG+ AF+P+C Y D + SG
Sbjct: 104 AGKDPTHGCGNFVRVIQTFNRTHLYVCGSGAFSPVCTYLNRGRRSEDQVFMIDSKCESGK 163
Query: 164 ARCPFDARQTNVALFADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHF 223
RC F+ V++ + +L+S DF+ +DA I+RS+ +A+RT +++SKW+ EP F
Sbjct: 164 GRCSFNPNVNTVSVMINEELFSGMYIDFMGTDAAIFRSLTKRNAVRTDQHNSKWLSEPMF 223
Query: 224 L--HAIEYGN-----YVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTS 276
+ H I G VYFFF+E ++N K ++S +ARIC ND GG + ++ K WT+
Sbjct: 224 VDAHVIPDGTDPNDAKVYFFFKEKLTDNNRSTKQIHSMIARICPNDTGGLRSLVNK-WTT 282
Query: 277 FLKARLNCSVPGDSF--FYFDVLQSITDIIQINGIPTVV-GVFTTQLNSIPGSAVCAFSM 333
FLKARL CSV + +FD L+ + + N T+V G+FTT + GSAVC + +
Sbjct: 283 FLKARLVCSVTDEDGPETHFDELEDVFLLETDNPRTTLVYGIFTTSSSVFKGSAVCVYHL 342
Query: 334 DDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFI 393
DI+ VF G F ++ P+ + + ++P PRPG C +T+ +FPD+ ++FI
Sbjct: 343 SDIQTVFNGPFAHKEGPNHQLISY-QGRIPYPRPGTCPGGAFTPNMRTTKEFPDDVVTFI 401
Query: 394 KSHPLMDSAVPPIADEPWFTKTRVRYRLTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLA 453
++HPLM +++ PI P + Y+ T I+VD Y V+F+G++ G V KV+
Sbjct: 402 RNHPLMYNSIYPIHKRPLIVRIGTDYKYTKIAVDRVNAADGRYHVLFLGTDRGTVQKVVV 461
Query: 454 KTSPFSLNDSVLLEEIEAY-NHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCIIRIPL 512
+ S++ ++LEE+E + NHA + ++++ LYV+ + + ++ L
Sbjct: 462 LPTNNSVSGELILEELEVFKNHA----------PITTMKISSKKQQLYVSSNEGVSQVSL 511
Query: 513 SRCERYGSCKKSCIASRDPYCGWLSQGSCGRVTPGMLAEGYEQDTEFGNTAHLGDCHG 570
RC YG+ C +RDPYC W SC R P QD GN L C G
Sbjct: 512 HRCHIYGTACADCCLARDPYCAW-DGHSCSRFYPTGKRRSRRQDVRHGNP--LTQCRG 566
>gi|4759092 semaphorin 3B isoform 1 precursor [Homo sapiens]
Length = 749
Score = 287 bits (735), Expect = 3e-77
Identities = 183/525 (34%), Positives = 268/525 (51%), Gaps = 40/525 (7%)
Query: 66 RDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKH-KDECHNFIKV 124
R L++ + V ++NL+ + K KKL W + + RE C GK EC NF+K+
Sbjct: 64 RGRLFVGAENHVASLNLDNISKRA----KKLAWPAPVEWREECNWAGKDIGTECMNFVKL 119
Query: 125 FVPRNDEMVFVCGTNAFNPMCRYYRLS------TLEYDGEEIS-GLARCPFDARQTNVAL 177
N + CGT AF+P C + + L D I G + P+D R ++
Sbjct: 120 LHAYNRTHLLACGTGAFHPTCAFVEVGHRAEEPVLRLDPGRIEDGKGKSPYDPRHRAASV 179
Query: 178 FADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEY-------G 230
+LYS AD + D I+RS+G +LRT +DS+W+ EP F+
Sbjct: 180 LVGEELYSGVAADLMGRDFTIFRSLGQRPSLRTEPHDSRWLNEPKFVKVFWIPESENPDD 239
Query: 231 NYVYFFFREIAVEHNN-LGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPG- 288
+ +YFFFRE AVE LG+ SRV +IC+ND+GG QR L WT+FLKARL CSVPG
Sbjct: 240 DKIYFFFRETAVEAAPALGRLSVSRVGQICRNDVGG-QRSLVNKWTTFLKARLVCSVPGV 298
Query: 289 DSFFYFDVLQSITDII-QINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQ 347
+ +FD LQ + + + + P + VF+T + GSAVC +SM+D+ + F G F +
Sbjct: 299 EGDTHFDQLQDVFLLSSRDHRTPLLYAVFSTSSSIFQGSAVCVYSMNDVRRAFLGPFAHK 358
Query: 348 KTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIA 407
+ P W + + +VP PRPG C + ++ DFPD+ + F ++HPLM ++V P
Sbjct: 359 EGPMHQWVSY-QGRVPYPRPGMCPSKTFG-TFSSTKDFPDDVIQFARNHPLMYNSVLPTG 416
Query: 408 DEPWFTKTRVRYRLTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLA--KTSPFSLNDSVL 465
P F + Y T I+ D A +Y V+F+G++ G VLKV++ K S S + +L
Sbjct: 417 GRPLFLQVGANYTFTQIAADRVAAADGHYDVLFIGTDVGTVLKVISVPKGSRPSA-EGLL 475
Query: 466 LEEIEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSC 525
LEE+ + E+ V S+Q+ H LYVA S + +I L RC +G C
Sbjct: 476 LEELHVF---------EDSAAVTSMQISSKRHQLYVASRSAVAQIALHRCAAHGRVCTEC 526
Query: 526 IASRDPYCGWLSQGSCGRVTPGMLAEGYEQDTEFGNTAHLGDCHG 570
+RDPYC W +C R P QD G+ + L C G
Sbjct: 527 CLARDPYCAW-DGVACTRFQPSAKRRFRRQDVRNGDPSTL--CSG 568
>gi|54607089 semaphorin 3B isoform 2 precursor [Homo sapiens]
Length = 748
Score = 283 bits (725), Expect = 4e-76
Identities = 183/525 (34%), Positives = 268/525 (51%), Gaps = 41/525 (7%)
Query: 66 RDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKH-KDECHNFIKV 124
R L++ + V ++NL+ + K KKL W + + RE C GK EC NF+K+
Sbjct: 64 RGRLFVGAENHVASLNLDNISKRA----KKLAWPAPVEWREECNWAGKDIGTECMNFVKL 119
Query: 125 FVPRNDEMVFVCGTNAFNPMCRYYRLS------TLEYDGEEIS-GLARCPFDARQTNVAL 177
N + CGT AF+P C + + L D I G + P+D R ++
Sbjct: 120 LHAYNRTHLLACGTGAFHPTCAFVEVGHRAEEPVLRLDPGRIEDGKGKSPYDPRHRAASV 179
Query: 178 FADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEY-------G 230
+LYS AD + D I+RS+G +LRT +DS+W+ EP F+
Sbjct: 180 LVGEELYSGVAADLMGRDFTIFRSLGQRPSLRTEPHDSRWLNEPKFVKVFWIPESENPDD 239
Query: 231 NYVYFFFREIAVEHNN-LGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPG- 288
+ +YFFFRE AVE LG+ SRV +IC+ND+GG QR L WT+FLKARL CSVPG
Sbjct: 240 DKIYFFFRETAVEAAPALGRLSVSRVGQICRNDVGG-QRSLVNKWTTFLKARLVCSVPGV 298
Query: 289 DSFFYFDVLQSITDII-QINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQ 347
+ +FD LQ + + + + P + VF+T + GSAVC +SM+D+ + F G F +
Sbjct: 299 EGDTHFDQLQDVFLLSSRDHRTPLLYAVFSTS-SIFQGSAVCVYSMNDVRRAFLGPFAHK 357
Query: 348 KTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIA 407
+ P W + + +VP PRPG C + ++ DFPD+ + F ++HPLM ++V P
Sbjct: 358 EGPMHQWVSY-QGRVPYPRPGMCPSKTFG-TFSSTKDFPDDVIQFARNHPLMYNSVLPTG 415
Query: 408 DEPWFTKTRVRYRLTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLA--KTSPFSLNDSVL 465
P F + Y T I+ D A +Y V+F+G++ G VLKV++ K S S + +L
Sbjct: 416 GRPLFLQVGANYTFTQIAADRVAAADGHYDVLFIGTDVGTVLKVISVPKGSRPSA-EGLL 474
Query: 466 LEEIEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSC 525
LEE+ + E+ V S+Q+ H LYVA S + +I L RC +G C
Sbjct: 475 LEELHVF---------EDSAAVTSMQISSKRHQLYVASRSAVAQIALHRCAAHGRVCTEC 525
Query: 526 IASRDPYCGWLSQGSCGRVTPGMLAEGYEQDTEFGNTAHLGDCHG 570
+RDPYC W +C R P QD G+ + L C G
Sbjct: 526 CLARDPYCAW-DGVACTRFQPSAKRRFRRQDVRNGDPSTL--CSG 567
>gi|214010220 semaphorin 4D isoform 2 [Homo sapiens]
Length = 738
Score = 281 bits (718), Expect = 3e-75
Identities = 177/494 (35%), Positives = 275/494 (55%), Gaps = 44/494 (8%)
Query: 61 LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKD-ECH 119
L+ + +DTLYI R+ V+ VN + + + ++ W+ + + CA KGK K EC
Sbjct: 54 LLSEDKDTLYIGAREAVFAVNALNISEKQ----HEVYWKVSEDKKAKCAEKGKSKQTECL 109
Query: 120 NFIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFA 179
N+I+V P + ++VCGTNAF P C + L++ ++ G+ G RCPFD + ++
Sbjct: 110 NYIRVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMV 169
Query: 180 DGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEY---------- 229
DG+LYS T +FL S+ +I R+ S LRT +Y W+ EP F+ A
Sbjct: 170 DGELYSGTSYNFLGSEPIISRN-SSHSPLRT-EYAIPWLNEPSFVFADVIRKSPDSPDGE 227
Query: 230 GNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGD 289
+ VYFFF E++VE+ + + + R+AR+CK D GG R L+K WTSFLKARL CS P D
Sbjct: 228 DDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGG-LRTLQKKWTSFLKARLICSRP-D 285
Query: 290 SFFYFDVLQSITDIIQING--IPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFK-GRFKE 346
S F+VL+ + +++ G +P +FT QLN++ SAVCA+++ E+VF G++ +
Sbjct: 286 SGLVFNVLRDVF-VLRSPGLKVPVFYALFTPQLNNVGLSAVCAYNLSTAEEVFSHGKYMQ 344
Query: 347 QKTPDSVWT--AVPEDKVPKPRPGCCA-KHGLAEAYKTSIDFPDETLSFIKSHPLMDSAV 403
T + T VPKPRPG C A Y +S++ PD+TL F+K HPLMD +V
Sbjct: 345 STTVEQSHTKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSV 404
Query: 404 PPIADEPWFTKTRVRYRLTAISVDHS-AGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLND 462
PI + P K V Y T I VD + A Y V+FV ++ G + K + SL
Sbjct: 405 TPIDNRPRLIKKDVNY--TQIVVDRTQALDGTVYDVMFVSTDRGALHKAI------SLEH 456
Query: 463 SV-LLEEIEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSC 521
+V ++EE + + ++ E + + L K + +Y +S +++ PL+ C ++G+C
Sbjct: 457 AVHIIEETQLF-------QDFEPVQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTC 509
Query: 522 KKSCIASRDPYCGW 535
+ C+ +RDPYC W
Sbjct: 510 -EDCVLARDPYCAW 522
>gi|214010218 semaphorin 4D isoform 1 [Homo sapiens]
Length = 862
Score = 281 bits (718), Expect = 3e-75
Identities = 177/494 (35%), Positives = 275/494 (55%), Gaps = 44/494 (8%)
Query: 61 LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKD-ECH 119
L+ + +DTLYI R+ V+ VN + + + ++ W+ + + CA KGK K EC
Sbjct: 54 LLSEDKDTLYIGAREAVFAVNALNISEKQ----HEVYWKVSEDKKAKCAEKGKSKQTECL 109
Query: 120 NFIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFA 179
N+I+V P + ++VCGTNAF P C + L++ ++ G+ G RCPFD + ++
Sbjct: 110 NYIRVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMV 169
Query: 180 DGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEY---------- 229
DG+LYS T +FL S+ +I R+ S LRT +Y W+ EP F+ A
Sbjct: 170 DGELYSGTSYNFLGSEPIISRN-SSHSPLRT-EYAIPWLNEPSFVFADVIRKSPDSPDGE 227
Query: 230 GNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGD 289
+ VYFFF E++VE+ + + + R+AR+CK D GG R L+K WTSFLKARL CS P D
Sbjct: 228 DDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGG-LRTLQKKWTSFLKARLICSRP-D 285
Query: 290 SFFYFDVLQSITDIIQING--IPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFK-GRFKE 346
S F+VL+ + +++ G +P +FT QLN++ SAVCA+++ E+VF G++ +
Sbjct: 286 SGLVFNVLRDVF-VLRSPGLKVPVFYALFTPQLNNVGLSAVCAYNLSTAEEVFSHGKYMQ 344
Query: 347 QKTPDSVWT--AVPEDKVPKPRPGCCA-KHGLAEAYKTSIDFPDETLSFIKSHPLMDSAV 403
T + T VPKPRPG C A Y +S++ PD+TL F+K HPLMD +V
Sbjct: 345 STTVEQSHTKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSV 404
Query: 404 PPIADEPWFTKTRVRYRLTAISVDHS-AGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLND 462
PI + P K V Y T I VD + A Y V+FV ++ G + K + SL
Sbjct: 405 TPIDNRPRLIKKDVNY--TQIVVDRTQALDGTVYDVMFVSTDRGALHKAI------SLEH 456
Query: 463 SV-LLEEIEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSC 521
+V ++EE + + ++ E + + L K + +Y +S +++ PL+ C ++G+C
Sbjct: 457 AVHIIEETQLF-------QDFEPVQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTC 509
Query: 522 KKSCIASRDPYCGW 535
+ C+ +RDPYC W
Sbjct: 510 -EDCVLARDPYCAW 522
>gi|157388902 semaphorin 4C [Homo sapiens]
Length = 833
Score = 268 bits (685), Expect = 2e-71
Identities = 166/487 (34%), Positives = 259/487 (53%), Gaps = 52/487 (10%)
Query: 69 LYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKD-ECHNFIKVFVP 127
LY+ R+ ++ ++ + I +W + + + C KGK+ EC NFI+ P
Sbjct: 65 LYVGAREALFAFSMEALELQGAI-----SWEAPVEKKTECIQKGKNNQTECFNFIRFLQP 119
Query: 128 RNDEMVFVCGTNAFNPMCRYYRLSTLEYD-GEEISGLARCPFDARQTNVALFADGKLYSA 186
N ++VCGT AF P C Y + T + GE G +CP+D + + L DG+LYSA
Sbjct: 120 YNASHLYVCGTYAFQPKCTYVNMLTFTLEHGEFEDGKGKCPYDPAKGHAGLLVDGELYSA 179
Query: 187 TVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAI----EYGNY------VYFF 236
T+ +FL ++ +I R+MG +++T +Y + W+ EPHF+ + G++ VYFF
Sbjct: 180 TLNNFLGTEPIILRNMGPHHSMKT-EYLAFWLNEPHFVGSAYVPESVGSFTGDDDKVYFF 238
Query: 237 FREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDV 296
FRE AVE + + V +RVAR+CK DMGG+ R L++ WT+FLKARL CS P YF+
Sbjct: 239 FRERAVESDCYAEQVVARVARVCKGDMGGA-RTLQRKWTTFLKARLACSAPNWQ-LYFNQ 296
Query: 297 LQSITDIIQIN-GIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWT 355
LQ++ + + T GVF Q + SA+C + +++I++VF+G +KE W
Sbjct: 297 LQAMHTLQDTSWHNTTFFGVFQAQWGDMYLSAICEYQLEEIQRVFEGPYKEYHEEAQKWD 356
Query: 356 AVPEDKVPKPRPGCC-----AKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEP 410
D VP PRPG C +HG Y +S++ PD L+F+K HPLM+ V P P
Sbjct: 357 RY-TDPVPSPRPGSCINNWHRRHG----YTSSLELPDNILNFVKKHPLMEEQVGPRWSRP 411
Query: 411 WFTKTRVRYRLTAISVDHSAG-PYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSV-LLEE 468
K + T + D G YTV+F+G+ G +LK + SL V L+EE
Sbjct: 412 LLVKKGTNF--THLVADRVTGLDGATYTVLFIGTGDGWLLKAV------SLGPWVHLIEE 463
Query: 469 IEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIAS 528
++ + + + + SL L + L+ S ++++P++ C +Y SC C+ +
Sbjct: 464 LQLF----------DQEPMRSLVLSQSKKLLFAGSRSQLVQLPVADCMKYRSC-ADCVLA 512
Query: 529 RDPYCGW 535
RDPYC W
Sbjct: 513 RDPYCAW 519
>gi|39777610 semaphorin 4B precursor [Homo sapiens]
Length = 837
Score = 260 bits (664), Expect = 5e-69
Identities = 180/543 (33%), Positives = 276/543 (50%), Gaps = 71/543 (13%)
Query: 52 ESQHRLDFQLMLKIRD--TLYIAGRDQVYTV--NLNEMPKTEVIPNKKLTWRSRQQDREN 107
E++H ++ +L RD TLY+ R+ ++ + NL+ +P E ++L W + + ++
Sbjct: 63 EAEHISNYTALLLSRDGRTLYVGAREALFALSSNLSFLPGGEY---QELLWGADAEKKQQ 119
Query: 108 CAMKGKHKD-ECHNFIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEIS----- 161
C+ KGK +C N+IK+ +P + +F CGT AF+PMC Y + +E
Sbjct: 120 CSFKGKDPQRDCQNYIKILLPLSGSHLFTCGTAAFSPMCTYINMENFTLARDEKGNVLLE 179
Query: 162 -GLARCPFDARQTNVALFADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSK--WI 218
G RCPFD + AL DG+LY+ TV+ F +D I RS +LR K +S W+
Sbjct: 180 DGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQ----SLRPTKTESSLNWL 235
Query: 219 KEPHFLHAIEY----------GNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQR 268
++P F+ + + +YFFF E E + SR+ARICK D GG +R
Sbjct: 236 QDPAFVASAYIPESLGSLQGDDDKIYFFFSETGQEFEFFENTIVSRIARICKGDEGG-ER 294
Query: 269 VLEKHWTSFLKARLNCSVPGDSFFYFDVLQSITDIIQINGIPT------VVGVFTTQLN- 321
VL++ WTSFLKA+L CS P D F F+VLQ D+ ++ P GVFT+Q +
Sbjct: 295 VLQQRWTSFLKAQLLCSRPDDGF-PFNVLQ---DVFTLSPSPQDWRDTLFYGVFTSQWHR 350
Query: 322 -SIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAE-AY 379
+ GSAVC F+M D+++VF G +KE W V VP PRPG C + E
Sbjct: 351 GTTEGSAVCVFTMKDVQRVFSGLYKEVNRETQQWYTVTH-PVPTPRPGACITNSARERKI 409
Query: 380 KTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYRLTAISVDHSAGPYQNYTVI 439
+S+ PD L+F+K H LMD V + + RY+ ++V G + Y V+
Sbjct: 410 NSSLQLPDRVLNFLKDHFLMDGQV---RSRMLLLQPQARYQ--RVAVHRVPGLHHTYDVL 464
Query: 440 FVGSEAGMVLKVLAKTSPFSLNDSV-LLEEIEAYNHAKCSAENEEDKKVISLQLDKDHHA 498
F+G+ G + K + S+ V ++EE++ ++ + V +L LD
Sbjct: 465 FLGTGDGRLHKAV------SVGPRVHIIEELQIFS---------SGQPVQNLLLDTHRGL 509
Query: 499 LYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGSCGRVT---PGMLAEGYEQ 555
LY A S ++++P++ C Y SC C+ +RDPYC W S SC V+ P + + Q
Sbjct: 510 LYAASHSGVVQVPMANCSLYRSC-GDCLLARDPYCAW-SGSSCKHVSLYQPQLATRPWIQ 567
Query: 556 DTE 558
D E
Sbjct: 568 DIE 570
>gi|39777608 semaphorin 4B precursor [Homo sapiens]
Length = 837
Score = 260 bits (664), Expect = 5e-69
Identities = 180/543 (33%), Positives = 276/543 (50%), Gaps = 71/543 (13%)
Query: 52 ESQHRLDFQLMLKIRD--TLYIAGRDQVYTV--NLNEMPKTEVIPNKKLTWRSRQQDREN 107
E++H ++ +L RD TLY+ R+ ++ + NL+ +P E ++L W + + ++
Sbjct: 63 EAEHISNYTALLLSRDGRTLYVGAREALFALSSNLSFLPGGEY---QELLWGADAEKKQQ 119
Query: 108 CAMKGKHKD-ECHNFIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEIS----- 161
C+ KGK +C N+IK+ +P + +F CGT AF+PMC Y + +E
Sbjct: 120 CSFKGKDPQRDCQNYIKILLPLSGSHLFTCGTAAFSPMCTYINMENFTLARDEKGNVLLE 179
Query: 162 -GLARCPFDARQTNVALFADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSK--WI 218
G RCPFD + AL DG+LY+ TV+ F +D I RS +LR K +S W+
Sbjct: 180 DGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQ----SLRPTKTESSLNWL 235
Query: 219 KEPHFLHAIEY----------GNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQR 268
++P F+ + + +YFFF E E + SR+ARICK D GG +R
Sbjct: 236 QDPAFVASAYIPESLGSLQGDDDKIYFFFSETGQEFEFFENTIVSRIARICKGDEGG-ER 294
Query: 269 VLEKHWTSFLKARLNCSVPGDSFFYFDVLQSITDIIQINGIPT------VVGVFTTQLN- 321
VL++ WTSFLKA+L CS P D F F+VLQ D+ ++ P GVFT+Q +
Sbjct: 295 VLQQRWTSFLKAQLLCSRPDDGF-PFNVLQ---DVFTLSPSPQDWRDTLFYGVFTSQWHR 350
Query: 322 -SIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAE-AY 379
+ GSAVC F+M D+++VF G +KE W V VP PRPG C + E
Sbjct: 351 GTTEGSAVCVFTMKDVQRVFSGLYKEVNRETQQWYTVTH-PVPTPRPGACITNSARERKI 409
Query: 380 KTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYRLTAISVDHSAGPYQNYTVI 439
+S+ PD L+F+K H LMD V + + RY+ ++V G + Y V+
Sbjct: 410 NSSLQLPDRVLNFLKDHFLMDGQV---RSRMLLLQPQARYQ--RVAVHRVPGLHHTYDVL 464
Query: 440 FVGSEAGMVLKVLAKTSPFSLNDSV-LLEEIEAYNHAKCSAENEEDKKVISLQLDKDHHA 498
F+G+ G + K + S+ V ++EE++ ++ + V +L LD
Sbjct: 465 FLGTGDGRLHKAV------SVGPRVHIIEELQIFS---------SGQPVQNLLLDTHRGL 509
Query: 499 LYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGSCGRVT---PGMLAEGYEQ 555
LY A S ++++P++ C Y SC C+ +RDPYC W S SC V+ P + + Q
Sbjct: 510 LYAASHSGVVQVPMANCSLYRSC-GDCLLARDPYCAW-SGSSCKHVSLYQPQLATRPWIQ 567
Query: 556 DTE 558
D E
Sbjct: 568 DIE 570
>gi|9910362 semaphorin sem2 [Homo sapiens]
Length = 782
Score = 253 bits (646), Expect = 6e-67
Identities = 179/538 (33%), Positives = 259/538 (48%), Gaps = 48/538 (8%)
Query: 54 QHRLDFQLML--KIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMK 111
Q L+ Q M + RD L++ G D +Y++ L++ +++ W + RE C K
Sbjct: 53 QGSLNLQAMYLDEYRDRLFLGGLDALYSLRLDQAWPDP----REVLWPPQPGQREECVRK 108
Query: 112 GKHK-DECHNFIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEI---------S 161
G+ EC NF++V P N + CGT AF P C L T+ + GE + S
Sbjct: 109 GRDPLTECANFVRVLQPHNRTHLLACGTGAFQPTCA---LITVGHRGEHVLHLEPGSVES 165
Query: 162 GLARCPFDARQTNVALFADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEP 221
G RCP + + + F DG+LY+ ADFL +A+I+RS G ALR+ D + +P
Sbjct: 166 GRGRCPHEPSRPFASTFIDGELYTGLTADFLGREAMIFRSGGPRPALRSDS-DQSLLHDP 224
Query: 222 HFLHAIEY-------GNYVYFFFRE-IAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKH 273
F+ A + VYFFF E + SRV R+C ND GG QRVL
Sbjct: 225 RFVMAARIPENSDQDNDKVYFFFSETVPSPDGGSNHVTVSRVGRVCVNDAGG-QRVLVNK 283
Query: 274 WTSFLKARLNCSVPGD--SFFYFDVLQSITDIIQINGIPT-VVGVFTTQLNSIPGSAVCA 330
W++FLKARL CSVPG + +FD L+ + + G V +F+T G AVC
Sbjct: 284 WSTFLKARLVCSVPGPGGAETHFDQLEDVFLLWPKAGKSLEVYALFSTVSAVFQGFAVCV 343
Query: 331 FSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEA---YKTSIDFPD 387
+ M DI +VF G F + P W KVP PRPG C A+ + ++ D+PD
Sbjct: 344 YHMADIWEVFNGPFAHRDGPQHQWGPYG-GKVPFPRPGVCPSKMTAQPGRPFGSTKDYPD 402
Query: 388 ETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYRLTAISVDHSAGPYQNYTVIFVGSEAGM 447
E L F ++HPLM V P P KT + +L I VD Y VIF+G+++G
Sbjct: 403 EVLQFARAHPLMFWPVRPRHGRPVLVKTHLAQQLHQIVVDRVEAEDGTYDVIFLGTDSGS 462
Query: 448 VLKVLAKTSPFSLN-DSVLLEEIEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSSC 506
VLKV+A + S + V+LEE++ + + + +++ LYV
Sbjct: 463 VLKVIALQAGGSAEPEEVVLEELQVF---------KVPTPITEMEISVKRQMLYVGSRLG 513
Query: 507 IIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGSCGRVTPGMLAEGY-EQDTEFGNTA 563
+ ++ L +CE YG+ C +RDPYC W SC P + + QD GN A
Sbjct: 514 VAQLRLHQCETYGTACAECCLARDPYCAW-DGASCTHYRPSLGKRRFRRQDIRHGNPA 570
>gi|21361914 semaphorin B [Homo sapiens]
Length = 761
Score = 233 bits (594), Expect = 7e-61
Identities = 167/519 (32%), Positives = 265/519 (51%), Gaps = 54/519 (10%)
Query: 58 DFQLMLKIRD--TLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHK 115
DF +L D TLY+ R+ + +++ + P + N + W + + + CA K K
Sbjct: 63 DFDTLLLSGDGNTLYVGAREAILALDIQD-PGVPRLKNM-IPWPASDRKKSECAFKKKSN 120
Query: 116 D-ECHNFIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEY----DGEEISGLARCPFDA 170
+ +C NFI+V V N ++ CGT AF+P C + L + + + G + PFD
Sbjct: 121 ETQCFNFIRVLVSYNVTHLYTCGTFAFSPACTFIELQDSYLLPISEDKVMEGKGQSPFDP 180
Query: 171 RQTNVALFADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIK-EPHFLHAIEY 229
+ A+ DG LYS T+ +FL S+ ++ R++G L+T + +W+ + F+ AI
Sbjct: 181 AHKHTAVLVDGMLYSGTMNNFLGSEPILMRTLGSQPVLKTDNF-LRWLHHDASFVAAIPS 239
Query: 230 GNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGD 289
VYFFF E A E + + SRVAR+CKND+GG +++L+K WT+FLKA+L C+ PG
Sbjct: 240 TQVVYFFFEETASEFDFFERLHTSRVARVCKNDVGG-EKLLQKKWTTFLKAQLLCTQPGQ 298
Query: 290 SFFYFDVLQSITDIIQINGIPTVVGVFTT--QLNSIPGSAVCAFSMDDIEKVFKGRFKEQ 347
F + ++ P + VFT+ Q+ SAVCAFS+ DIE+VFKG++KE
Sbjct: 299 LPFNV-IRHAVLLPADSPTAPHIYAVFTSQWQVGGTRSSAVCAFSLLDIERVFKGKYKEL 357
Query: 348 KTPDSVWTAV--PEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPP 405
S WT PE PRPG C+ + D+ L+F+K H LMD V
Sbjct: 358 NKETSRWTTYRGPE---TNPRPGSCSVGPSS----------DKALTFMKDHFLMDEQV-- 402
Query: 406 IADEPWFTKTRVRYRLTAISVDHSAG-PYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSV 464
P K+ V Y T ++V+ + G ++ V+++G+ G + K + + +
Sbjct: 403 -VGTPLLVKSGVEY--TRLAVETAQGLDGHSHLVMYLGTTTGSLHKAVVSGD----SSAH 455
Query: 465 LLEEIEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKS 524
L+EEI+ + + + V +LQL A++V FS + R+P + C Y SC
Sbjct: 456 LVEEIQLF---------PDPEPVRNLQLAPTQGAVFVGFSGGVWRVPRANCSVYESC-VD 505
Query: 525 CIASRDPYCGW--LSQGSCGRVTPGMLAEGYEQDTEFGN 561
C+ +RDP+C W S+ C P + ++QD E GN
Sbjct: 506 CVLARDPHCAWDPESRTCCLLSAPNL--NSWKQDMERGN 542
>gi|19923279 semaphorin W [Homo sapiens]
Length = 770
Score = 224 bits (570), Expect = 4e-58
Identities = 153/483 (31%), Positives = 247/483 (51%), Gaps = 41/483 (8%)
Query: 68 TLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHNFIKVFVP 127
TLY+ RD ++ ++L P + P +++ W + R+NC KGK +DECHNF+++
Sbjct: 76 TLYVGARDTIFALSL---PFSGERP-RRIDWMVPEAHRQNCRKKGKKEDECHNFVQILAI 131
Query: 128 RNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFADGKLYSAT 187
N + CGT AF+P C +S + SG +CPF+ Q + A+ A G LY+AT
Sbjct: 132 ANASHLLTCGTFAFDPKCGVIDVSRFQQVERLESGRGKCPFEPAQRSAAVMAGGVLYAAT 191
Query: 188 VADFLASDAVIYRSMGDGSA-LRTIKYDSKWIKEPHFLHAI-----EYG-----NYVYFF 236
V ++L ++ +I R++G +RT S W+ P F+ A+ E+G + +YFF
Sbjct: 192 VKNYLGTEPIITRAVGRAEDWIRTDTLPS-WLNAPAFVAAVALSPAEWGDEDGDDEIYFF 250
Query: 237 FREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDV 296
F E + ++ + RVAR+C D+GG ++ L++ WT+FLKA L C P + V
Sbjct: 251 FTETSRAFDSYERIKVPRVARVCAGDLGG-RKTLQQRWTTFLKADLLCPGP-EHGRASSV 308
Query: 297 LQSITDIIQI--NGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVW 354
LQ + + G P G+F++Q SAVCAF DI V G F+E K +
Sbjct: 309 LQDVAVLRPELGAGTPIFYGIFSSQWEGATISAVCAFRPQDIRTVLNGPFRELKHDCNRG 368
Query: 355 TAVPEDKVPKPRPGCCAKHGL-AEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFT 413
V ++ VP+PRPG C + + + +S+ PD L+FI+ HPLMD V P P
Sbjct: 369 LPVVDNDVPQPRPGECITNNMKLRHFGSSLSLPDRVLTFIRDHPLMDRPVFPADGHPLLV 428
Query: 414 KTRVRY-RLTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAY 472
T Y R+ A V +G + Y V+++G+E G + + + + S +LE++ +
Sbjct: 429 TTDTAYLRVVAHRVTSLSG--KEYDVLYLGTEDGHLHRAVRIGAQLS-----VLEDLALF 481
Query: 473 NHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPY 532
E + V +++L H L V + + ++ + C R SC + CI ++DP
Sbjct: 482 ---------PEPQPVENMKL--YHSWLLVGSRTEVTQVNTTNCGRLQSCSE-CILAQDPV 529
Query: 533 CGW 535
C W
Sbjct: 530 CAW 532
>gi|28872814 semaphorin 4G [Homo sapiens]
Length = 843
Score = 221 bits (564), Expect = 2e-57
Identities = 164/541 (30%), Positives = 253/541 (46%), Gaps = 59/541 (10%)
Query: 18 LRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQLMLKIRDTLYIAGRDQV 77
LR S D P T+ Y F+G+ + L+ + L + R +
Sbjct: 23 LRRPSRELDATPRMTIPYEELSGTRHFKGQAQNYSTL------LLEEASARLLVGARGAL 76
Query: 78 YTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKD-ECHNFIKVFVPRNDEMVFVC 136
++++ N++ +K++ W + + + C KGK+ EC N ++ N ++ C
Sbjct: 77 FSLSANDIGDGA---HKEIHWEASPEMQSKCHQKGKNNQTECFNHVRFLQRLNSTHLYAC 133
Query: 137 GTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFADGKLYSATVADFLASDA 196
GT+AF P+C G +CP+D + L DG LY+AT +F +
Sbjct: 134 GTHAFQPLCAAIDAEAFTLPTSFEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPD 193
Query: 197 VIYRSMGDGSALRTIKYDSKWIKEPHFLH----------AIEYGNYVYFFFREIAVEHNN 246
+ R +LRT + W+ + F+ A+ + VY+FF E A E +
Sbjct: 194 I--RRSRHPHSLRTEETPMHWLNDAEFVFSVLVRESKASAVGDDDKVYYFFTERATEEGS 251
Query: 247 LGKAVYSR-------VARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQS 299
G SR VAR+CK D+GG +++L+K WTSFLKARL C +P ++ L+
Sbjct: 252 -GSFTQSRSSHRVARVARVCKGDLGG-KKILQKKWTSFLKARLICHIP-----LYETLRG 304
Query: 300 ITDI-IQINGIPTVVGVFT--TQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTA 356
+ + + + FT TQ ++ SA+C + + +I+ VF G + E + W
Sbjct: 305 VCSLDAETSSRTHFYAAFTLSTQWKTLEASAICRYDLAEIQAVFAGPYMEYQDGSRRWGR 364
Query: 357 VPEDKVPKPRPGCCAKHGL-AEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKT 415
E VP+PRPG C L ++ Y +S D P L F+K HPLM V P P K
Sbjct: 365 Y-EGGVPEPRPGSCITDSLRSQGYNSSQDLPSLVLDFVKLHPLMARPVVPTRGRPLLLKR 423
Query: 416 RVRY-RLTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNH 474
+RY LT V AGP Y ++F+G+ G + K + S ++EE + +
Sbjct: 424 NIRYTHLTGTPVTTPAGP--TYDLLFLGTADGWIHKAVVLGSGMH-----IIEETQVFRE 476
Query: 475 AKCSAENEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCG 534
++ S EN VISL H+LYV S +I++PLS C RY SC CI +RDPYCG
Sbjct: 477 SQ-SVEN----LVISLL----QHSLYVGAPSGVIQLPLSSCSRYRSC-YDCILARDPYCG 526
Query: 535 W 535
W
Sbjct: 527 W 527
>gi|4504237 semaphorin 7A isoform 1 preproprotein [Homo sapiens]
Length = 666
Score = 134 bits (337), Expect = 4e-31
Identities = 126/441 (28%), Positives = 192/441 (43%), Gaps = 59/441 (13%)
Query: 115 KDECHNFIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTN 174
K +C N+I + + R E + CGTNA +P C T+ GE + G A PF + +
Sbjct: 123 KRDCENYITL-LERRSEGLLACGTNARHPSCWNLVNGTVVPLGE-MRGYA--PFSPDENS 178
Query: 175 VALFADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAI------E 228
+ LF ++YS +R + S L T ++ P F+ A
Sbjct: 179 LVLFEGDEVYSTIRKQEYNGKIPRFRRIRGESELYT---SDTVMQNPQFIKATIVHQDQA 235
Query: 229 YGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPG 288
Y + +Y+FFRE + N SRVA++C+ D GG + W +FLKA L CS
Sbjct: 236 YDDKIYYFFREDNPDKNPEAPLNVSRVAQLCRGDQGGESSLSVSKWNTFLKAMLVCSDAA 295
Query: 289 DSFFYFDVLQSITDIIQING---IPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFK 345
+ F+ LQ + + +G V GVF+ N SAVC +S+ DI+KVF R
Sbjct: 296 TN-KNFNRLQDVFLLPDPSGQWRDTRVYGVFSNPWNY---SAVCVYSLGDIDKVF--RTS 349
Query: 346 EQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPP 405
K S +P PRPG C P ET HP + V P
Sbjct: 350 SLKGYHS--------SLPNPRPGKC--------LPDQQPIPTETFQVADRHPEVAQRVEP 393
Query: 406 IA--DEPWFTKTRVRYRLTAISVDHSAGPYQNYTVIFVGSEAGMVLKVL---AKTSPFSL 460
+ P F ++ Y+ A+ A + + V+++ ++ G + KV+ + F+
Sbjct: 394 MGPLKTPLF-HSKYHYQKVAVH-RMQASHGETFHVLYLTTDRGTIHKVVEPGEQEHSFAF 451
Query: 461 NDSVLLEEIEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGS 520
N + EI+ + A + ++ LD + LYV+ + ++PL CE YG
Sbjct: 452 N----IMEIQPFRRAAA---------IQTMSLDAERRKLYVSSQWEVSQVPLDLCEVYGG 498
Query: 521 CKKSCIASRDPYCGWLSQGSC 541
C+ SRDPYCGW QG C
Sbjct: 499 GCHGCLMSRDPYCGW-DQGRC 518
>gi|225637520 semaphorin 7A isoform 2 preproprotein [Homo sapiens]
Length = 652
Score = 133 bits (335), Expect = 7e-31
Identities = 125/441 (28%), Positives = 192/441 (43%), Gaps = 59/441 (13%)
Query: 115 KDECHNFIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTN 174
+ +C N+I + + R E + CGTNA +P C T+ GE + G A PF + +
Sbjct: 109 RTDCENYITL-LERRSEGLLACGTNARHPSCWNLVNGTVVPLGE-MRGYA--PFSPDENS 164
Query: 175 VALFADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAI------E 228
+ LF ++YS +R + S L T ++ P F+ A
Sbjct: 165 LVLFEGDEVYSTIRKQEYNGKIPRFRRIRGESELYT---SDTVMQNPQFIKATIVHQDQA 221
Query: 229 YGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPG 288
Y + +Y+FFRE + N SRVA++C+ D GG + W +FLKA L CS
Sbjct: 222 YDDKIYYFFREDNPDKNPEAPLNVSRVAQLCRGDQGGESSLSVSKWNTFLKAMLVCSDAA 281
Query: 289 DSFFYFDVLQSITDIIQING---IPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFK 345
+ F+ LQ + + +G V GVF+ N SAVC +S+ DI+KVF R
Sbjct: 282 TN-KNFNRLQDVFLLPDPSGQWRDTRVYGVFSNPWNY---SAVCVYSLGDIDKVF--RTS 335
Query: 346 EQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPP 405
K S +P PRPG C P ET HP + V P
Sbjct: 336 SLKGYHS--------SLPNPRPGKC--------LPDQQPIPTETFQVADRHPEVAQRVEP 379
Query: 406 IA--DEPWFTKTRVRYRLTAISVDHSAGPYQNYTVIFVGSEAGMVLKVL---AKTSPFSL 460
+ P F ++ Y+ A+ A + + V+++ ++ G + KV+ + F+
Sbjct: 380 MGPLKTPLF-HSKYHYQKVAVH-RMQASHGETFHVLYLTTDRGTIHKVVEPGEQEHSFAF 437
Query: 461 NDSVLLEEIEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGS 520
N + EI+ + A + ++ LD + LYV+ + ++PL CE YG
Sbjct: 438 N----IMEIQPFRRAAA---------IQTMSLDAERRKLYVSSQWEVSQVPLDLCEVYGG 484
Query: 521 CKKSCIASRDPYCGWLSQGSC 541
C+ SRDPYCGW QG C
Sbjct: 485 GCHGCLMSRDPYCGW-DQGRC 504
>gi|225637524 semaphorin 7A isoform 3 [Homo sapiens]
Length = 501
Score = 116 bits (291), Expect = 9e-26
Identities = 108/389 (27%), Positives = 166/389 (42%), Gaps = 55/389 (14%)
Query: 167 PFDARQTNVALFADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHA 226
PF + ++ LF ++YS +R + S L T ++ P F+ A
Sbjct: 6 PFSPDENSLVLFEGDEVYSTIRKQEYNGKIPRFRRIRGESELYT---SDTVMQNPQFIKA 62
Query: 227 I------EYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKA 280
Y + +Y+FFRE + N SRVA++C+ D GG + W +FLKA
Sbjct: 63 TIVHQDQAYDDKIYYFFREDNPDKNPEAPLNVSRVAQLCRGDQGGESSLSVSKWNTFLKA 122
Query: 281 RLNCSVPGDSFFYFDVLQSITDIIQING---IPTVVGVFTTQLNSIPGSAVCAFSMDDIE 337
L CS + F+ LQ + + +G V GVF+ N SAVC +S+ DI+
Sbjct: 123 MLVCSDAATN-KNFNRLQDVFLLPDPSGQWRDTRVYGVFSNPWNY---SAVCVYSLGDID 178
Query: 338 KVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHP 397
KVF R K S +P PRPG C P ET HP
Sbjct: 179 KVF--RTSSLKGYHS--------SLPNPRPGKC--------LPDQQPIPTETFQVADRHP 220
Query: 398 LMDSAVPPIA--DEPWFTKTRVRYRLTAISVDHSAGPYQNYTVIFVGSEAGMVLKVL--- 452
+ V P+ P F ++ Y+ A+ A + + V+++ ++ G + KV+
Sbjct: 221 EVAQRVEPMGPLKTPLF-HSKYHYQKVAVH-RMQASHGETFHVLYLTTDRGTIHKVVEPG 278
Query: 453 AKTSPFSLNDSVLLEEIEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCIIRIPL 512
+ F+ N + EI+ + A + ++ LD + LYV+ + ++PL
Sbjct: 279 EQEHSFAFN----IMEIQPFRRAAA---------IQTMSLDAERRKLYVSSQWEVSQVPL 325
Query: 513 SRCERYGSCKKSCIASRDPYCGWLSQGSC 541
CE YG C+ SRDPYCGW QG C
Sbjct: 326 DLCEVYGGGCHGCLMSRDPYCGW-DQGRC 353
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,979,854
Number of Sequences: 37866
Number of extensions: 2083465
Number of successful extensions: 8173
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 199
Number of HSP's that attempted gapping in prelim test: 7472
Number of HSP's gapped (non-prelim): 682
length of query: 998
length of database: 18,247,518
effective HSP length: 112
effective length of query: 886
effective length of database: 14,006,526
effective search space: 12409782036
effective search space used: 12409782036
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.