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Search of human proteins with 241896898
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|241896898 family with sequence similarity 20, member A [Homo
sapiens]
(541 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|241896898 family with sequence similarity 20, member A [Homo ... 1099 0.0
gi|116174742 family with sequence similarity 20, member C [Homo ... 438 e-123
gi|7662150 hypothetical protein LOC9917 [Homo sapiens] 234 1e-61
gi|18765711 four jointed box 1 [Homo sapiens] 38 0.027
gi|239753555 PREDICTED: hypothetical protein XP_002345695 [Homo ... 32 1.9
gi|31881740 solute carrier family 12 (potassium/chloride transpo... 32 1.9
gi|7657253 T-complex protein 1 [Homo sapiens] 31 2.5
gi|190358490 hypothetical protein LOC51313 isoform 1 [Homo sapiens] 31 3.3
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 30 4.3
gi|190358493 hypothetical protein LOC51313 isoform 2 [Homo sapiens] 30 5.6
gi|32526911 hypothetical protein LOC51313 isoform 2 [Homo sapiens] 30 5.6
gi|51093863 hypothetical protein LOC64855 isoform 1 [Homo sapiens] 30 7.3
gi|79750824 hypothetical protein LOC64855 isoform 2 [Homo sapiens] 30 7.3
gi|63252906 tropomyosin 1 alpha chain isoform 7 [Homo sapiens] 30 7.3
gi|63252902 tropomyosin 1 alpha chain isoform 2 [Homo sapiens] 30 7.3
gi|52630419 sterol regulatory element binding transcription fact... 29 9.6
gi|22547195 sterol regulatory element binding transcription fact... 29 9.6
gi|54112407 protein kinase CHK2 isoform c [Homo sapiens] 29 9.6
gi|22209009 protein kinase CHK2 isoform b [Homo sapiens] 29 9.6
gi|6005850 protein kinase CHK2 isoform a [Homo sapiens] 29 9.6
gi|239745791 PREDICTED: hypothetical protein XP_002343589 [Homo ... 29 9.6
>gi|241896898 family with sequence similarity 20, member A [Homo
sapiens]
Length = 541
Score = 1099 bits (2842), Expect = 0.0
Identities = 541/541 (100%), Positives = 541/541 (100%)
Query: 1 MPGLRRDRLLTLLLLGALLSADLYFHLWPQVQRQLRPRERPRGCPCTGRASSLARDSAAA 60
MPGLRRDRLLTLLLLGALLSADLYFHLWPQVQRQLRPRERPRGCPCTGRASSLARDSAAA
Sbjct: 1 MPGLRRDRLLTLLLLGALLSADLYFHLWPQVQRQLRPRERPRGCPCTGRASSLARDSAAA 60
Query: 61 ASDPGTIVHNFSRTEPRTEPAGGSHSGSSSKLQALFAHPLYNVPEEPPLLGAEDSLLASQ 120
ASDPGTIVHNFSRTEPRTEPAGGSHSGSSSKLQALFAHPLYNVPEEPPLLGAEDSLLASQ
Sbjct: 61 ASDPGTIVHNFSRTEPRTEPAGGSHSGSSSKLQALFAHPLYNVPEEPPLLGAEDSLLASQ 120
Query: 121 EALRYYRRKVARWNRRHKMYREQMNLTSLDPPLQLRLEASWVQFHLGINRHGLYSRSSPV 180
EALRYYRRKVARWNRRHKMYREQMNLTSLDPPLQLRLEASWVQFHLGINRHGLYSRSSPV
Sbjct: 121 EALRYYRRKVARWNRRHKMYREQMNLTSLDPPLQLRLEASWVQFHLGINRHGLYSRSSPV 180
Query: 181 VSKLLQDMRHFPTISADYSQDEKALLGACDCTQIVKPSGVHLKLVLRFSDFGKAMFKPMR 240
VSKLLQDMRHFPTISADYSQDEKALLGACDCTQIVKPSGVHLKLVLRFSDFGKAMFKPMR
Sbjct: 181 VSKLLQDMRHFPTISADYSQDEKALLGACDCTQIVKPSGVHLKLVLRFSDFGKAMFKPMR 240
Query: 241 QQRDEETPVDFFYFIDFQRHNAEIAAFHLDRILDFRRVPPTVGRIVNVTKEILEVTKNEI 300
QQRDEETPVDFFYFIDFQRHNAEIAAFHLDRILDFRRVPPTVGRIVNVTKEILEVTKNEI
Sbjct: 241 QQRDEETPVDFFYFIDFQRHNAEIAAFHLDRILDFRRVPPTVGRIVNVTKEILEVTKNEI 300
Query: 301 LQSVFFVSPASNVCFFAKCPYMCKTEYAVCGNPHLLEGSLSAFLPSLNLAPRLSVPNPWI 360
LQSVFFVSPASNVCFFAKCPYMCKTEYAVCGNPHLLEGSLSAFLPSLNLAPRLSVPNPWI
Sbjct: 301 LQSVFFVSPASNVCFFAKCPYMCKTEYAVCGNPHLLEGSLSAFLPSLNLAPRLSVPNPWI 360
Query: 361 RSYTLAGKEEWEVNPLYCDTVKQIYPYNNSQRLLNVIDMAIFDFLIGNMDRHHYEMFTKF 420
RSYTLAGKEEWEVNPLYCDTVKQIYPYNNSQRLLNVIDMAIFDFLIGNMDRHHYEMFTKF
Sbjct: 361 RSYTLAGKEEWEVNPLYCDTVKQIYPYNNSQRLLNVIDMAIFDFLIGNMDRHHYEMFTKF 420
Query: 421 GDDGFLIHLDNARGFGRHSHDEISILSPLSQCCMIKKKTLLHLQLLAQADYRLSDVMRES 480
GDDGFLIHLDNARGFGRHSHDEISILSPLSQCCMIKKKTLLHLQLLAQADYRLSDVMRES
Sbjct: 421 GDDGFLIHLDNARGFGRHSHDEISILSPLSQCCMIKKKTLLHLQLLAQADYRLSDVMRES 480
Query: 481 LLEDQLSPVLTEPHLLALDRRLQTILRTVEGCIVAHGQQSVIVDGPVEQLAPDSGQANLT 540
LLEDQLSPVLTEPHLLALDRRLQTILRTVEGCIVAHGQQSVIVDGPVEQLAPDSGQANLT
Sbjct: 481 LLEDQLSPVLTEPHLLALDRRLQTILRTVEGCIVAHGQQSVIVDGPVEQLAPDSGQANLT 540
Query: 541 S 541
S
Sbjct: 541 S 541
>gi|116174742 family with sequence similarity 20, member C [Homo
sapiens]
Length = 584
Score = 438 bits (1126), Expect = e-123
Identities = 224/451 (49%), Positives = 298/451 (66%), Gaps = 25/451 (5%)
Query: 76 PRTEPAGGSHSGSSSKLQALFAHPLYNVPEEPPLLGAEDSLLASQEALRYYRRKVARWNR 135
PR + G +S L LF HPLY V P L ED L R + +
Sbjct: 145 PRRSESPPGPGGDASLLARLFEHPLYRVAVPP--LTEEDVLFNVNSDTRLSPKAAENPDW 202
Query: 136 RHKMYREQMNLTSLDPPLQLRLEA--SWVQFHLGINRHGLYSRSSPVVSKLLQDMRHFPT 193
H L+ P + +++ +W++FH+GINR+ LYSR +P + LL D+
Sbjct: 203 PHAGAEGAEFLS----PGEAAVDSYPNWLKFHIGINRYELYSRHNPAIEALLHDLSSQRI 258
Query: 194 ISADYSQDEKALLGACDCTQIVKPSGVHLKLVLRFSDFGKAMFKPMRQQRDEETPVDFFY 253
S +K G LKL++ F ++G+A+FKPM+Q R++ETP DFFY
Sbjct: 259 TSV-----------------AMKSGGTQLKLIMTFQNYGQALFKPMKQTREQETPPDFFY 301
Query: 254 FIDFQRHNAEIAAFHLDRILDFRRVPPTVGRIVNVTKEILEVTKNEILQSVFFVSPASNV 313
F D++RHNAEIAAFHLDRILDFRRVPP GR+VN+TKEI +VT+++ L FF+SPA+N+
Sbjct: 302 FSDYERHNAEIAAFHLDRILDFRRVPPVAGRMVNMTKEIRDVTRDKKLWRTFFISPANNI 361
Query: 314 CFFAKCPYMCKTEYAVCGNPHLLEGSLSAFLPSLNLAPRLSVPNPWIRSYTLAGKEEWEV 373
CF+ +C Y C TE+A+CG P +EGSL+AFLP L+LA R + NPW RSY K EWEV
Sbjct: 362 CFYGECSYYCSTEHALCGKPDQIEGSLAAFLPDLSLAKRKTWRNPWRRSYHKRKKAEWEV 421
Query: 374 NPLYCDTVKQIYPYNNSQRLLNVIDMAIFDFLIGNMDRHHYEMFTKFGDDGFLIHLDNAR 433
+P YC+ VKQ PY++S R+L+V+DM IFDFL+GNMDRHHYE F KFG++ F+IHLDN R
Sbjct: 422 DPDYCEEVKQTPPYDSSHRILDVMDMTIFDFLMGNMDRHHYETFEKFGNETFIIHLDNGR 481
Query: 434 GFGRHSHDEISILSPLSQCCMIKKKTLLHLQLLAQADYRLSDVMRESLLEDQLSPVLTEP 493
GFG++SHDE+SIL PL QCC I+K T L LQLLA+ +Y+LS +M ESL DQ++PVL +P
Sbjct: 482 GFGKYSHDELSILVPLQQCCRIRKSTYLRLQLLAKEEYKLSLLMAESLRGDQVAPVLYQP 541
Query: 494 HLLALDRRLQTILRTVEGCIVAHGQQSVIVD 524
HL ALDRRL+ +L+ V C+ +G SV+ D
Sbjct: 542 HLEALDRRLRVVLKAVRDCVERNGLHSVVDD 572
>gi|7662150 hypothetical protein LOC9917 [Homo sapiens]
Length = 409
Score = 234 bits (598), Expect = 1e-61
Identities = 142/376 (37%), Positives = 202/376 (53%), Gaps = 26/376 (6%)
Query: 149 LDPPLQLRLEASWVQFHLGINRHGLYSRSSPVVSKLLQDMRHFPTISADYSQDEKALLGA 208
L P L L++ W + +Y +P + ++ M I AD
Sbjct: 52 LAPKLDHTLQSPWEIAAQWVVPREVYPEETPELGAVMHAMATKKIIKAD----------- 100
Query: 209 CDCTQIVKPSGVHLKLVLRFSDFGKAMFKPMRQQRDEETPVDFFYFIDFQRHNAEIAAFH 268
V G LK +L K +FKP R RD V+ + + RHNAE+AAFH
Sbjct: 101 ------VGYKGTQLKALLILEGGQKVVFKPKRYSRDHV--VEGEPYAGYDRHNAEVAAFH 152
Query: 269 LDRILDFRRVPPTVGRIVNVTKEILEVTKNEILQSVFFVSPASNVCFFAKCPYMCKTEYA 328
LDRIL F R P VGR VN+ EI V ++L + F++ +N CF+ KC Y +TE A
Sbjct: 153 LDRILGFHRAPLVVGRFVNLRTEIKPVATEQLLST--FLTVGNNTCFYGKCYYCRETEPA 210
Query: 329 VCGNPHLLEGSLSAFLPSLNLAPRLSVPNPWIRSYTLAGKEEWEVNPLYCDTVKQIYPYN 388
C + ++EGS++ +LP ++ P +PW R+Y WE + YCD VK+ PY+
Sbjct: 211 -CADGDIMEGSVTLWLP--DVWPLQKHRHPWGRTYREGKLARWEYDESYCDAVKKTSPYD 267
Query: 389 NSQRLLNVIDMAIFDFLIGNMDRHHYEMFTKFGDDGFLIHLDNARGFGRHSHDEISILSP 448
+ RLL++ID A+FD+LIGN DRHHYE F LI LDNA+ FG S DE SIL+P
Sbjct: 268 SGPRLLDIIDTAVFDYLIGNADRHHYESFQDDEGASMLILLDNAKSFGNPSLDERSILAP 327
Query: 449 LSQCCMIKKKTLLHLQLLAQADYRLSDVMRESLLEDQLSPVLTEPHLLALDRRLQTILRT 508
L QCC+I+ T L L L ++ ++ D +SPVL++PHL A+D+RL ++L T
Sbjct: 328 LYQCCIIRVSTWNRLNYLKNG--VLKSALKSAMAHDPISPVLSDPHLDAVDQRLLSVLAT 385
Query: 509 VEGCIVAHGQQSVIVD 524
V+ C G +V+V+
Sbjct: 386 VKQCTDQFGMDTVLVE 401
>gi|18765711 four jointed box 1 [Homo sapiens]
Length = 437
Score = 37.7 bits (86), Expect = 0.027
Identities = 52/215 (24%), Positives = 85/215 (39%), Gaps = 40/215 (18%)
Query: 334 HLLEGS---LSAFLPSLNLAPRLSVPNPWIRSYTLAGKEEWEVNPLYCDTVKQIYPYNNS 390
H EGS L+ +LP+L + VP PW E+ + PL D ++ + +
Sbjct: 233 HWTEGSVVSLTRWLPNLT---DVVVPAPW-------RSEDGRLRPLR-DAGGELANLSQA 281
Query: 391 QR--LLNVIDMAIFDFLIGNMDRHHYEMFT---------------KFGDDGFLIHLDNAR 433
+ L+ D+ +FD+L N DR +F+ G G L+ LDN
Sbjct: 282 ELVDLVQWTDLILFDYLTANFDRLVSNLFSLQWDPRVMQRATSNLHRGPGGALVFLDNEA 341
Query: 434 GFGRHSHDEISILSP-----LSQCCMIKKKT---LLHLQLLAQADYRLSDVMRESLLEDQ 485
G H + + L C+ +++T +L L A RL + R
Sbjct: 342 GLV-HGYRVAGMWDKYNEPLLQSVCVFRERTARRVLELHRGQDAAARLLRLYRRHEPRFP 400
Query: 486 LSPVLTEPHLLALDRRLQTILRTVEGCIVAHGQQS 520
L +PH L RRL + + + C +G++S
Sbjct: 401 ELAALADPHAQLLQRRLDFLAKHILHCKAKYGRRS 435
>gi|239753555 PREDICTED: hypothetical protein XP_002345695 [Homo
sapiens]
Length = 258
Score = 31.6 bits (70), Expect = 1.9
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 12/121 (9%)
Query: 30 QVQRQLRPRERPRGCPCTGRASSLARDSAAAASDPGTIVHNFSRTEPRT--------EPA 81
Q Q R RERPR P G S R A A+ PG + SR P T A
Sbjct: 135 QKQWPSRKRERPRLPPPPGSRKSRLRRWARASPHPGELAGLTSRLCPATCRGRGRGLARA 194
Query: 82 GGSHSGSSSKLQALFAHPLYNVPEEPPLLGAE---DSLLASQEALRYYRRKVARWNRRHK 138
+H S + + P + P P +LG + SL + + ++ R W R +
Sbjct: 195 QATHIPLSGHSRGIQTRP-SSTPSPPGVLGKDTQPPSLFSHLKKMQSIMRTSQGWEHRMR 253
Query: 139 M 139
+
Sbjct: 254 L 254
>gi|31881740 solute carrier family 12 (potassium/chloride
transporters), member 9 [Homo sapiens]
Length = 914
Score = 31.6 bits (70), Expect = 1.9
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 50 ASSLARDSAAAASDPGTIVHNFSRTEPR----------TEPAGGSHSGSSSKLQALFAHP 99
A L R S P T+V F P +EPA + GSS L LF P
Sbjct: 610 AQHLLRISGLGGMKPNTLVLGFYDDAPPQDHFLTDPAFSEPADSTREGSSPALSTLFPPP 669
Query: 100 LYNVPEEPPLLGAEDSLLASQEALRYYRRKV 130
P P L +D + +AL+ + V
Sbjct: 670 --RAPGSPRALNPQDYVATVADALKMNKNVV 698
>gi|7657253 T-complex protein 1 [Homo sapiens]
Length = 557
Score = 31.2 bits (69), Expect = 2.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 483 EDQLSPVLTEPHLLALDRRLQTILRTVEGCIVAHGQQSVIV 523
E SP EPHLL+ +QT+ + C HG+Q +V
Sbjct: 21 ESPRSPEEEEPHLLSSLAAVQTLASVIRPCYGPHGRQKFLV 61
>gi|190358490 hypothetical protein LOC51313 isoform 1 [Homo sapiens]
Length = 527
Score = 30.8 bits (68), Expect = 3.3
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 262 AEIAAFHLDRILDFRRVPPTVGRIVNVTKEILEVTKNEILQSVFFVSPA 310
+E+ AFHLDRIL R P+V R + + ++ FF+ PA
Sbjct: 275 SEVFAFHLDRILGLNRTLPSVSRKAEFIQAAAAACLS--MRLAFFIFPA 321
>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
[Homo sapiens]
Length = 674
Score = 30.4 bits (67), Expect = 4.3
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 22 DLYFHLWPQVQRQLRPRE---RPRGCPCT-GRASSLARDSAAAASDPGTIVHNFSRTEPR 77
D F LW + L P R R P T G A S PG + + SR+
Sbjct: 437 DTQFCLWDLTEDVLYPHPPLARTRTLPGTPGTTPPAASSSRGGEPGPGPLPRSLSRSNSL 496
Query: 78 TEPAGGSHSG 87
PAGG +G
Sbjct: 497 PHPAGGGKAG 506
>gi|190358493 hypothetical protein LOC51313 isoform 2 [Homo sapiens]
Length = 519
Score = 30.0 bits (66), Expect = 5.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 262 AEIAAFHLDRILDFRRVPPTVGR 284
+E+ AFHLDRIL R P+V R
Sbjct: 275 SEVFAFHLDRILGLNRTLPSVSR 297
>gi|32526911 hypothetical protein LOC51313 isoform 2 [Homo sapiens]
Length = 519
Score = 30.0 bits (66), Expect = 5.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 262 AEIAAFHLDRILDFRRVPPTVGR 284
+E+ AFHLDRIL R P+V R
Sbjct: 275 SEVFAFHLDRILGLNRTLPSVSR 297
>gi|51093863 hypothetical protein LOC64855 isoform 1 [Homo sapiens]
Length = 746
Score = 29.6 bits (65), Expect = 7.3
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 129 KVARWNRRHKMYREQMNLTSLDPPLQLRLEAS---WVQFHLGINRHGLYSRSSPVVSKLL 185
K A R+H +YR+ M + + DP L L E + W + + G S S+P + L
Sbjct: 554 KEAAVQRKHNLYRDSMVMHNSDPNLHLLAEGAPIDWGEEYSNSGGGGSPSPSTPESATLS 613
Query: 186 QDMRHFPTISADYSQDEKAL 205
+ R + + +E L
Sbjct: 614 EKRRRAKQVVSVVQDEEVGL 633
>gi|79750824 hypothetical protein LOC64855 isoform 2 [Homo sapiens]
Length = 733
Score = 29.6 bits (65), Expect = 7.3
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 129 KVARWNRRHKMYREQMNLTSLDPPLQLRLEAS---WVQFHLGINRHGLYSRSSPVVSKLL 185
K A R+H +YR+ M + + DP L L E + W + + G S S+P + L
Sbjct: 541 KEAAVQRKHNLYRDSMVMHNSDPNLHLLAEGAPIDWGEEYSNSGGGGSPSPSTPESATLS 600
Query: 186 QDMRHFPTISADYSQDEKAL 205
+ R + + +E L
Sbjct: 601 EKRRRAKQVVSVVQDEEVGL 620
>gi|63252906 tropomyosin 1 alpha chain isoform 7 [Homo sapiens]
Length = 284
Score = 29.6 bits (65), Expect = 7.3
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 112 AEDSLLASQEALRYYRRKVARWNRRHKMYREQMN 145
AEDSLLA++EA VA NRR ++ E+++
Sbjct: 67 AEDSLLAAEEAAAKAEADVASLNRRIQLVEEELD 100
>gi|63252902 tropomyosin 1 alpha chain isoform 2 [Homo sapiens]
Length = 284
Score = 29.6 bits (65), Expect = 7.3
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 112 AEDSLLASQEALRYYRRKVARWNRRHKMYREQMN 145
AEDSLLA++EA VA NRR ++ E+++
Sbjct: 67 AEDSLLAAEEAAAKAEADVASLNRRIQLVEEELD 100
>gi|52630419 sterol regulatory element binding transcription factor
1 isoform a [Homo sapiens]
Length = 1177
Score = 29.3 bits (64), Expect = 9.6
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 485 QLSPVLTEPHLLALDRRLQTILRTVEGCIVAHGQQSVIVDGPVEQLAP 532
Q PVL +PH + D L T ++T +G V S +V G Q P
Sbjct: 264 QQVPVLLQPHFIKADSLLLTAMKT-DGATVKAAGLSPLVSGTTVQTGP 310
>gi|22547195 sterol regulatory element binding transcription factor
1 isoform b [Homo sapiens]
Length = 1147
Score = 29.3 bits (64), Expect = 9.6
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 485 QLSPVLTEPHLLALDRRLQTILRTVEGCIVAHGQQSVIVDGPVEQLAP 532
Q PVL +PH + D L T ++T +G V S +V G Q P
Sbjct: 234 QQVPVLLQPHFIKADSLLLTAMKT-DGATVKAAGLSPLVSGTTVQTGP 280
>gi|54112407 protein kinase CHK2 isoform c [Homo sapiens]
Length = 586
Score = 29.3 bits (64), Expect = 9.6
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 46 CTGRASSLARDSAAAASDPGTIVHNFSRTEPRTEPAGGSHSGSSSKLQALFAHPLYNVPE 105
C+ S+ + +++ G I + + T P + + S SG+ S L+ + LY++PE
Sbjct: 18 CSQPHGSVTQSQGSSSQSQG-ISSSSTSTMPNSSQSSHSSSGTLSSLETVSTQELYSIPE 76
Query: 106 E 106
+
Sbjct: 77 D 77
>gi|22209009 protein kinase CHK2 isoform b [Homo sapiens]
Length = 514
Score = 29.3 bits (64), Expect = 9.6
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 46 CTGRASSLARDSAAAASDPGTIVHNFSRTEPRTEPAGGSHSGSSSKLQALFAHPLYNVPE 105
C+ S+ + +++ G I + + T P + + S SG+ S L+ + LY++PE
Sbjct: 18 CSQPHGSVTQSQGSSSQSQG-ISSSSTSTMPNSSQSSHSSSGTLSSLETVSTQELYSIPE 76
Query: 106 E 106
+
Sbjct: 77 D 77
>gi|6005850 protein kinase CHK2 isoform a [Homo sapiens]
Length = 543
Score = 29.3 bits (64), Expect = 9.6
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 46 CTGRASSLARDSAAAASDPGTIVHNFSRTEPRTEPAGGSHSGSSSKLQALFAHPLYNVPE 105
C+ S+ + +++ G I + + T P + + S SG+ S L+ + LY++PE
Sbjct: 18 CSQPHGSVTQSQGSSSQSQG-ISSSSTSTMPNSSQSSHSSSGTLSSLETVSTQELYSIPE 76
Query: 106 E 106
+
Sbjct: 77 D 77
>gi|239745791 PREDICTED: hypothetical protein XP_002343589 [Homo
sapiens]
Length = 117
Score = 29.3 bits (64), Expect = 9.6
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 94 ALFAHPLYNVPEEPPLLGAEDSLLASQEALRYYRRKVARWNRRHKMYREQMN 145
AL A+PL PP L LLA ++AL RR+ R RRH+ + + N
Sbjct: 24 ALGANPL------PPTLRLRPVLLAPRQALSRRRRRRRRRRRRHRPFCQPGN 69
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,237,042
Number of Sequences: 37866
Number of extensions: 958138
Number of successful extensions: 2371
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2353
Number of HSP's gapped (non-prelim): 22
length of query: 541
length of database: 18,247,518
effective HSP length: 107
effective length of query: 434
effective length of database: 14,195,856
effective search space: 6161001504
effective search space used: 6161001504
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.