Search of human proteins with 239757911

Search of human proteins with 239757911

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239757911 PREDICTED: similar to Family with sequence
similarity 127, member B [Homo sapiens]
         (113 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757911 PREDICTED: similar to Family with sequence similari...   238   1e-63
gi|118200333 family with sequence similarity 127, member B isofo...   234   1e-62
gi|118200337 family with sequence similarity 127, member C [Homo...   226   3e-60
gi|118200335 family with sequence similarity 127, member A [Homo...   222   4e-59
gi|197245393 family with sequence similarity 127, member B isofo...   132   5e-32
gi|6912480 leucine zipper, down-regulated in cancer 1 [Homo sapi...   132   5e-32
gi|49355807 leucine zipper, down-regulated in cancer 1-like [Hom...    79   6e-16
gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens]         57   3e-09
gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens]       57   3e-09
gi|199562283 retrotransposon-like 1 [Homo sapiens]                     57   4e-09
gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]       51   2e-07
gi|126157477 hypothetical protein LOC79680 [Homo sapiens]              50   3e-07
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]     49   9e-07
gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]     27   2.7  
gi|117553584 adaptor-related protein complex 3, delta 1 subunit ...    27   4.6  
gi|117553580 adaptor-related protein complex 3, delta 1 subunit ...    27   4.6  

>gi|239757911 PREDICTED: similar to Family with sequence similarity
           127, member B [Homo sapiens]
          Length = 113

 Score =  238 bits (606), Expect = 1e-63
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSN 60
           MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSN
Sbjct: 1   MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSN 60

Query: 61  DALKVTFLITRLTGPALQWVIPYIRKESPLLNDYRGFLAEMKRVFGWEEDEDF 113
           DALKVTFLITRLTGPALQWVIPYIRKESPLLNDYRGFLAEMKRVFGWEEDEDF
Sbjct: 61  DALKVTFLITRLTGPALQWVIPYIRKESPLLNDYRGFLAEMKRVFGWEEDEDF 113


>gi|118200333 family with sequence similarity 127, member B isoform
           1 [Homo sapiens]
          Length = 113

 Score =  234 bits (596), Expect = 1e-62
 Identities = 112/113 (99%), Positives = 112/113 (99%)

Query: 1   MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSN 60
           MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQT SYMFVDENTFSN
Sbjct: 1   MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60

Query: 61  DALKVTFLITRLTGPALQWVIPYIRKESPLLNDYRGFLAEMKRVFGWEEDEDF 113
           DALKVTFLITRLTGPALQWVIPYIRKESPLLNDYRGFLAEMKRVFGWEEDEDF
Sbjct: 61  DALKVTFLITRLTGPALQWVIPYIRKESPLLNDYRGFLAEMKRVFGWEEDEDF 113


>gi|118200337 family with sequence similarity 127, member C [Homo
           sapiens]
          Length = 113

 Score =  226 bits (576), Expect = 3e-60
 Identities = 108/113 (95%), Positives = 111/113 (98%)

Query: 1   MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSN 60
           M+GRVQLMKALLA PLRPAARRWRNPIPFPETFDGDTDRLPEFIVQT SYMFVDENTFSN
Sbjct: 1   MEGRVQLMKALLARPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60

Query: 61  DALKVTFLITRLTGPALQWVIPYIRKESPLLNDYRGFLAEMKRVFGWEEDEDF 113
           DALKVTFLITRLTGPALQWVIPYI+KESPLL+DYRGFLAEMKRVFGWEEDEDF
Sbjct: 61  DALKVTFLITRLTGPALQWVIPYIKKESPLLSDYRGFLAEMKRVFGWEEDEDF 113


>gi|118200335 family with sequence similarity 127, member A [Homo
           sapiens]
          Length = 113

 Score =  222 bits (566), Expect = 4e-59
 Identities = 106/113 (93%), Positives = 110/113 (97%)

Query: 1   MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSN 60
           MDGRVQL+KALLA P+RPA RRWRNPIPFPETFDGDTDRLPEFIVQT SYMFVDENTFS+
Sbjct: 1   MDGRVQLIKALLALPIRPATRRWRNPIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSS 60

Query: 61  DALKVTFLITRLTGPALQWVIPYIRKESPLLNDYRGFLAEMKRVFGWEEDEDF 113
           DALKVTFLITRLTGPALQWVIPYI+KESPLLNDYRGFLAEMKRVFGWEEDEDF
Sbjct: 61  DALKVTFLITRLTGPALQWVIPYIKKESPLLNDYRGFLAEMKRVFGWEEDEDF 113


>gi|197245393 family with sequence similarity 127, member B
          isoform 2 [Homo sapiens]
          Length = 83

 Score =  132 bits (333), Expect = 5e-32
 Identities = 63/64 (98%), Positives = 63/64 (98%)

Query: 1  MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSN 60
          MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQT SYMFVDENTFSN
Sbjct: 1  MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60

Query: 61 DALK 64
          DALK
Sbjct: 61 DALK 64


>gi|6912480 leucine zipper, down-regulated in cancer 1 [Homo
           sapiens]
          Length = 146

 Score =  132 bits (333), Expect = 5e-32
 Identities = 58/87 (66%), Positives = 72/87 (82%)

Query: 26  PIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIR 85
           P+PFPETF+G++ RLPEFIVQT SYM V+EN F NDA+KV FLI+ LTG A +WV+PYI 
Sbjct: 50  PVPFPETFNGESSRLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIE 109

Query: 86  KESPLLNDYRGFLAEMKRVFGWEEDED 112
            +SP+L DYR FL EMK+ FGW++DED
Sbjct: 110 MDSPILGDYRAFLDEMKQCFGWDDDED 136


>gi|49355807 leucine zipper, down-regulated in cancer 1-like [Homo
           sapiens]
          Length = 239

 Score = 79.3 bits (194), Expect = 6e-16
 Identities = 35/80 (43%), Positives = 53/80 (66%)

Query: 26  PIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIR 85
           P   PE F GD  RL  F++Q   +M    + F  +A +V FL++RLTG A +W IP+++
Sbjct: 98  PTSLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQ 157

Query: 86  KESPLLNDYRGFLAEMKRVF 105
            +SPL N+Y+GFLAE++R +
Sbjct: 158 PDSPLRNNYQGFLAELRRTY 177


>gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens]
          Length = 325

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 28/80 (35%), Positives = 43/80 (53%)

Query: 26  PIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIR 85
           P   PE FDG+ D L  F+ Q   +M      FS D ++V F+ + +TG A +W    + 
Sbjct: 79  PEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLE 138

Query: 86  KESPLLNDYRGFLAEMKRVF 105
           +   L+++Y  F+ EMK VF
Sbjct: 139 RSHYLMHNYPAFMMEMKHVF 158


>gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens]
          Length = 708

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 28/80 (35%), Positives = 43/80 (53%)

Query: 26  PIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIR 85
           P   PE FDG+ D L  F+ Q   +M      FS D ++V F+ + +TG A +W    + 
Sbjct: 79  PEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLE 138

Query: 86  KESPLLNDYRGFLAEMKRVF 105
           +   L+++Y  F+ EMK VF
Sbjct: 139 RSHYLMHNYPAFMMEMKHVF 158


>gi|199562283 retrotransposon-like 1 [Homo sapiens]
          Length = 1358

 Score = 56.6 bits (135), Expect = 4e-09
 Identities = 29/83 (34%), Positives = 44/83 (53%)

Query: 27  IPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIRK 86
           +P P+ F GD     EFIV     +      F ND L+V ++I  L+G AL+W    +++
Sbjct: 200 LPAPKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQE 259

Query: 87  ESPLLNDYRGFLAEMKRVFGWEE 109
            SPL+ D+  FL  M  VF + +
Sbjct: 260 NSPLIGDFPAFLEAMSEVFEYRQ 282


>gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]
          Length = 475

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 27/80 (33%), Positives = 43/80 (53%)

Query: 26  PIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIR 85
           P+ +  TF GD+ +LPEF+VQ  SYM V  + +  +A  V+F+    +G A  W    + 
Sbjct: 237 PLQYTLTFSGDSQKLPEFLVQLYSYMRVRGHLYPTEAALVSFVGNCFSGRAGWWFQLLLD 296

Query: 86  KESPLLNDYRGFLAEMKRVF 105
            +SPLL     F+  ++  F
Sbjct: 297 IQSPLLEQCESFIPVLQDTF 316


>gi|126157477 hypothetical protein LOC79680 [Homo sapiens]
          Length = 364

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 26/75 (34%), Positives = 38/75 (50%)

Query: 30  PETFDGDTDRLPEFIVQTCSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIRKESP 89
           P TFDG    L  F+ Q   YM      + ++  +V  ++ RLTG A  W  PY+  + P
Sbjct: 104 PGTFDGSPWLLDRFLAQLGDYMSFHFEHYQDNISRVCEILRRLTGRAQAWAAPYLDGDLP 163

Query: 90  LLNDYRGFLAEMKRV 104
           L +DY  F  ++K V
Sbjct: 164 LPDDYELFCQDLKEV 178


>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
          Length = 569

 Score = 48.9 bits (115), Expect = 9e-07
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 15  PLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSNDALKVTFLITRLTG 74
           PL P  R      P  E F GD   L EF++Q  +++   E  F   A +V FLI+  TG
Sbjct: 144 PLAPLER------PEIEPFSGDPVYLAEFLMQLETFIADHEVHFPGGAERVAFLISFFTG 197

Query: 75  PALQWVIPYIRKESPLLNDYRGFLAEMKRVF 105
            A  W I   ++ SPL  ++  FL E+++ F
Sbjct: 198 EAKDWAISVTQEGSPLHANFPRFLDEIRKEF 228


>gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]
          Length = 1388

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/48 (25%), Positives = 26/48 (54%)

Query: 58   FSNDALKVTFLITRLTGPALQWVIPYIRKESPLLNDYRGFLAEMKRVF 105
            F +D+ ++ FL++   G A +W I  +    PL ++ + FL   + ++
Sbjct: 1179 FLDDSERMAFLVSLHLGAAERWFILQMEVGEPLSHENKSFLRRSQGIY 1226


>gi|117553584 adaptor-related protein complex 3, delta 1 subunit
           isoform 1 [Homo sapiens]
          Length = 1112

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 8   MKALLAGPLRPAARRWRNPIPFPETFDGD 36
           + AL AG L P A + +  +P PE  D D
Sbjct: 505 VSALFAGELNPVAPKAQKKVPVPEGLDLD 533


>gi|117553580 adaptor-related protein complex 3, delta 1 subunit
           isoform 2 [Homo sapiens]
          Length = 1153

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 8   MKALLAGPLRPAARRWRNPIPFPETFDGD 36
           + AL AG L P A + +  +P PE  D D
Sbjct: 596 VSALFAGELNPVAPKAQKKVPVPEGLDLD 624


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.142    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,764,356
Number of Sequences: 37866
Number of extensions: 192455
Number of successful extensions: 408
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 16
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.