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Search of human proteins with 239757500
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757500 PREDICTED: hypothetical protein [Homo sapiens]
(407 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757500 PREDICTED: hypothetical protein [Homo sapiens] 866 0.0
gi|239752017 PREDICTED: hypothetical protein XP_002348069 [Homo ... 637 0.0
gi|8923842 forkhead box J2 [Homo sapiens] 39 0.011
gi|158534055 round spermatid basic protein 1-like [Homo sapiens] 34 0.21
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 31 2.3
gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo sap... 30 3.9
gi|239747936 PREDICTED: hypothetical protein LOC375295 [Homo sap... 30 3.9
gi|239741831 PREDICTED: hypothetical protein [Homo sapiens] 30 3.9
gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens] 29 8.7
gi|169212963 PREDICTED: hypothetical protein [Homo sapiens] 29 8.7
gi|169213148 PREDICTED: hypothetical protein [Homo sapiens] 29 8.7
gi|169212812 PREDICTED: hypothetical protein [Homo sapiens] 29 8.7
gi|17978469 cyclin T2 isoform b [Homo sapiens] 29 8.7
gi|4502629 cyclin T2 isoform a [Homo sapiens] 29 8.7
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 29 8.7
>gi|239757500 PREDICTED: hypothetical protein [Homo sapiens]
Length = 407
Score = 866 bits (2238), Expect = 0.0
Identities = 407/407 (100%), Positives = 407/407 (100%)
Query: 1 MRAVGGNRLKACFTEIQGYVTSKGERNGSCSCWKGQESEWGDTSGAPDKVGQPLGQATCA 60
MRAVGGNRLKACFTEIQGYVTSKGERNGSCSCWKGQESEWGDTSGAPDKVGQPLGQATCA
Sbjct: 1 MRAVGGNRLKACFTEIQGYVTSKGERNGSCSCWKGQESEWGDTSGAPDKVGQPLGQATCA 60
Query: 61 GLLDVEGSGEEIVEGAVAHGHHSAREADHVVGHAEVRCRQVHQQRLRVEPHKVVRAIRDW 120
GLLDVEGSGEEIVEGAVAHGHHSAREADHVVGHAEVRCRQVHQQRLRVEPHKVVRAIRDW
Sbjct: 61 GLLDVEGSGEEIVEGAVAHGHHSAREADHVVGHAEVRCRQVHQQRLRVEPHKVVRAIRDW 120
Query: 121 EPGAVEEGTLFPVHWLGCYHAGHKGAEDRWATEKQRDGPCSHLAALSRGDGEGVHIQPQI 180
EPGAVEEGTLFPVHWLGCYHAGHKGAEDRWATEKQRDGPCSHLAALSRGDGEGVHIQPQI
Sbjct: 121 EPGAVEEGTLFPVHWLGCYHAGHKGAEDRWATEKQRDGPCSHLAALSRGDGEGVHIQPQI 180
Query: 181 PGYGVQQQHREGPVWVGVVQQCAQLPLLQPIATHVPLGMQEGHWGGLCVKKYQQLTAAKG 240
PGYGVQQQHREGPVWVGVVQQCAQLPLLQPIATHVPLGMQEGHWGGLCVKKYQQLTAAKG
Sbjct: 181 PGYGVQQQHREGPVWVGVVQQCAQLPLLQPIATHVPLGMQEGHWGGLCVKKYQQLTAAKG 240
Query: 241 AAPVENTWRSAAPGLWERACNGTLGKREQVSDDPHLVGVHTQDPELYPGIRPRPQSLPSS 300
AAPVENTWRSAAPGLWERACNGTLGKREQVSDDPHLVGVHTQDPELYPGIRPRPQSLPSS
Sbjct: 241 AAPVENTWRSAAPGLWERACNGTLGKREQVSDDPHLVGVHTQDPELYPGIRPRPQSLPSS 300
Query: 301 HGRPASRHYGNLSLVRSRALTSFPLKLRIPARAELECGGYVPGRQRGDDKFLPQAVAWGF 360
HGRPASRHYGNLSLVRSRALTSFPLKLRIPARAELECGGYVPGRQRGDDKFLPQAVAWGF
Sbjct: 301 HGRPASRHYGNLSLVRSRALTSFPLKLRIPARAELECGGYVPGRQRGDDKFLPQAVAWGF 360
Query: 361 CKAPAAGPQEQQDEQSKRHSRRHACGYFRLPSGARPHEKPVSNKKGV 407
CKAPAAGPQEQQDEQSKRHSRRHACGYFRLPSGARPHEKPVSNKKGV
Sbjct: 361 CKAPAAGPQEQQDEQSKRHSRRHACGYFRLPSGARPHEKPVSNKKGV 407
>gi|239752017 PREDICTED: hypothetical protein XP_002348069 [Homo
sapiens]
Length = 363
Score = 637 bits (1643), Expect = 0.0
Identities = 315/387 (81%), Positives = 320/387 (82%), Gaps = 42/387 (10%)
Query: 25 ERNGSCSCWKGQESEWGDTSGAPDKVGQPLGQATCAGLLDVEGSGEEIVEGAVAHGHHSA 84
ERNGSCSCWKGQESEWGDTSGAPDKVGQPLGQATCAGLLDVEGSGEEIVEGAVAHGHHSA
Sbjct: 15 ERNGSCSCWKGQESEWGDTSGAPDKVGQPLGQATCAGLLDVEGSGEEIVEGAVAHGHHSA 74
Query: 85 READHVVGHAEVRCRQVHQQRLRVEPHKVVRAIRDWEPGAVEEGTLFPVHWLGCYHAGHK 144
READHVVGHAEVRCRQVHQQRLRVEPHKVVRAIRDWEPGAVEEGTLFPVHWLGCYHAGHK
Sbjct: 75 READHVVGHAEVRCRQVHQQRLRVEPHKVVRAIRDWEPGAVEEGTLFPVHWLGCYHAGHK 134
Query: 145 GAEDRWATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYGVQQQHREGPVWVGVVQQCAQ 204
GAEDRWATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYGVQQQHREGPVWVGVVQQCAQ
Sbjct: 135 GAEDRWATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYGVQQQHREGPVWVGVVQQCAQ 194
Query: 205 LPLLQPIATHVPLGMQEGHWGGLCVKKYQQLTAAKG----AAPVENTWRSAAPGLWERAC 260
LPLLQPIATHVPLGMQEGHWGGLCVKKYQQLTAAKG V +W + AC
Sbjct: 195 LPLLQPIATHVPLGMQEGHWGGLCVKKYQQLTAAKGPKVCTHSVTVSWNQTHSSAPDGAC 254
Query: 261 NGTLGKREQVSDDPHLVGVHTQDPELYPGIRPRPQSLPSSHGRPASRHYGNLSLVRSRAL 320
G + +V P + RSRAL
Sbjct: 255 RKG-GPQYRVLQKPCVND-------------------------------------RSRAL 276
Query: 321 TSFPLKLRIPARAELECGGYVPGRQRGDDKFLPQAVAWGFCKAPAAGPQEQQDEQSKRHS 380
TSFPLKLRIPARAELECGGYVPGRQRGDDKFLPQAVAWGFCKAPAAGPQEQQDEQSKRHS
Sbjct: 277 TSFPLKLRIPARAELECGGYVPGRQRGDDKFLPQAVAWGFCKAPAAGPQEQQDEQSKRHS 336
Query: 381 RRHACGYFRLPSGARPHEKPVSNKKGV 407
RRHACGYFRLPSGARPHEKPVSNKKGV
Sbjct: 337 RRHACGYFRLPSGARPHEKPVSNKKGV 363
>gi|8923842 forkhead box J2 [Homo sapiens]
Length = 574
Score = 38.5 bits (88), Expect = 0.011
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 219 MQEGHWGGLCVKKYQQLTAAKGAAPVENTWRSAAPGLWERACNGTLGKREQVSDDPHLVG 278
+ + H LC LT P T R AP +C T GK+E + G
Sbjct: 458 LDQHHIANLCDSLNHFLTQTGHVPPQGGTHRPPAPARIADSCALTSGKQESAMSQVNSYG 517
Query: 279 VHTQDPELYPG---IRPRPQSLPSSHGRPA 305
H Q P LYPG + P P + + RPA
Sbjct: 518 -HPQAPHLYPGPSPMYPIPTQDSAGYNRPA 546
>gi|158534055 round spermatid basic protein 1-like [Homo sapiens]
Length = 846
Score = 34.3 bits (77), Expect = 0.21
Identities = 38/138 (27%), Positives = 54/138 (39%), Gaps = 25/138 (18%)
Query: 285 ELYPGIRPRPQSLPSSHGRPASRHYGNLSLV----RSRALTSFPLKLRIPARAELECGGY 340
+L P P PQS +G PAS + LS SR+ SF +P+ A
Sbjct: 68 QLQPPAAPSPQS----YGSPASWSFAPLSAAPSPSSSRSSFSFSAGTAVPSSASASLSQP 123
Query: 341 VPGR---------QRGDDKFLPQAVAWGFCKAPAAGPQEQQDEQSKRHSRRHACGYFRLP 391
VP + + LP A A A + P+E+++++ RRH G R
Sbjct: 124 VPRKLLVPPTLLHAQPHHLLLPAAAAAASANAKSRRPKEKREKE----RRRHGLGGAREA 179
Query: 392 SGARPHE----KPVSNKK 405
GA E KP+ K
Sbjct: 180 GGASREENGEVKPLPRDK 197
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 30.8 bits (68), Expect = 2.3
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 363 APAAGPQEQQDEQSKRHSRRHACGYFRLPSGARPHEKP 400
+P P++QQ S+R SRR G R PS R E P
Sbjct: 2702 SPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETP 2739
>gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo
sapiens]
Length = 262
Score = 30.0 bits (66), Expect = 3.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 287 YPGIRPRPQSLPSSHGRPASRHYGNLSLVRS 317
+PG PRP++ P +H R A H G + RS
Sbjct: 163 FPGPDPRPRTRPPAHARGAHAHRGGSAWKRS 193
>gi|239747936 PREDICTED: hypothetical protein LOC375295 [Homo
sapiens]
Length = 262
Score = 30.0 bits (66), Expect = 3.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 287 YPGIRPRPQSLPSSHGRPASRHYGNLSLVRS 317
+PG PRP++ P +H R A H G + RS
Sbjct: 163 FPGPDPRPRTRPPAHARGAHAHRGGSAWKRS 193
>gi|239741831 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 30.0 bits (66), Expect = 3.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 287 YPGIRPRPQSLPSSHGRPASRHYGNLSLVRS 317
+PG PRP++ P +H R A H G + RS
Sbjct: 163 FPGPDPRPRTRPPAHARGAHAHRGGSAWKRS 193
>gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]
Length = 4753
Score = 28.9 bits (63), Expect = 8.7
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 142 GHKGAEDRWATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYGVQQQHREGPVWVGVVQQ 201
G K +D W + LA L G GE V +Q +P H + P W+ +++
Sbjct: 1402 GEKNTDD-WESSPNTQTQVEALAVLGAG-GEEVKLQGPLP------LHPDLPKWLASLEK 1453
Query: 202 CAQLPLLQPIATHVPLGMQEGHWGGLCVKK 231
C +L L+ + V + G G +K+
Sbjct: 1454 CLRLALVHMLQGCVAARLARGPSLGEALKQ 1483
>gi|169212963 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 28.9 bits (63), Expect = 8.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 150 WATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYG 184
W T QR+GP SH S G + P +PG G
Sbjct: 19 WKTHVQREGPRSH----SLGTSSAFWLSPPLPGEG 49
>gi|169213148 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 28.9 bits (63), Expect = 8.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 150 WATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYG 184
W T QR+GP SH S G + P +PG G
Sbjct: 19 WKTHVQREGPRSH----SLGTSSAFWLSPPLPGEG 49
>gi|169212812 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 28.9 bits (63), Expect = 8.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 150 WATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYG 184
W T QR+GP SH S G + P +PG G
Sbjct: 19 WKTHVQREGPRSH----SLGTSSAFWLSPPLPGEG 49
>gi|17978469 cyclin T2 isoform b [Homo sapiens]
Length = 730
Score = 28.9 bits (63), Expect = 8.7
Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 185 VQQQHREGPVWVGVVQQCAQLPLLQPIATHVPLGMQEGHWGGLCVKKYQQLTAAKGAAPV 244
V+QQH++G Q + + PI +P+ E + K ++ + K P+
Sbjct: 461 VEQQHKQGQS-----QAASSSSVTSPIKMKIPIANTEKYMAD----KKEKSGSLKLRIPI 511
Query: 245 ENTWRSAAPGLWERACNGTLGKREQVSDD---------PHLVGVHTQDPELYPGIRPRPQ 295
T +SA+ + + +R SD+ PH+ H + + +P R
Sbjct: 512 PPTDKSASKEELKMKIKVSSSERHSSSDEGSGKSKHSSPHISRDHKEKHKEHPSSRHHTS 571
Query: 296 SLPSSHGRPASRHYGN 311
S SH S G+
Sbjct: 572 SHKHSHSHSGSSSGGS 587
>gi|4502629 cyclin T2 isoform a [Homo sapiens]
Length = 663
Score = 28.9 bits (63), Expect = 8.7
Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 185 VQQQHREGPVWVGVVQQCAQLPLLQPIATHVPLGMQEGHWGGLCVKKYQQLTAAKGAAPV 244
V+QQH++G Q + + PI +P+ E + K ++ + K P+
Sbjct: 461 VEQQHKQGQS-----QAASSSSVTSPIKMKIPIANTEKYMAD----KKEKSGSLKLRIPI 511
Query: 245 ENTWRSAAPGLWERACNGTLGKREQVSDD---------PHLVGVHTQDPELYPGIRPRPQ 295
T +SA+ + + +R SD+ PH+ H + + +P R
Sbjct: 512 PPTDKSASKEELKMKIKVSSSERHSSSDEGSGKSKHSSPHISRDHKEKHKEHPSSRHHTS 571
Query: 296 SLPSSHGRPASRHYGN 311
S SH S G+
Sbjct: 572 SHKHSHSHSGSSSGGS 587
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 28.9 bits (63), Expect = 8.7
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 241 AAPVENTWRSAAPGLWERACNGTLGKREQVSDDPHLVGVHTQDPELYPGIRP----RPQS 296
AAP++ S++P L +A G D PHL H P P RP RP S
Sbjct: 765 AAPLKGPGPSSSPSLPHQAPLG---------DSPHLPSPHPTRPPSRPPSRPQSVSRPPS 815
Query: 297 LPSSHGRP 304
P H P
Sbjct: 816 EPPLHPCP 823
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,384,625
Number of Sequences: 37866
Number of extensions: 1035211
Number of successful extensions: 2513
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2504
Number of HSP's gapped (non-prelim): 16
length of query: 407
length of database: 18,247,518
effective HSP length: 105
effective length of query: 302
effective length of database: 14,271,588
effective search space: 4310019576
effective search space used: 4310019576
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.