Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292464 Sequence: fasta or formatted (111aa) NCBI GI: 239757495
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.2         18           2
 C cysteine            0.9          1           1
 D aspartate           2.7          3           1
 E glutamate          17.1         19           2
 F phenylalanine       0.0          0           0
 G glycine             3.6          4           1
 H histidine           8.1          9           2
 I isoleucine          0.9          1           1
 K lysine              0.9          1           1
 L leucine            11.7         13           2
 M methionine          4.5          5           1
 N asparagine          0.9          1           1
 P proline             0.9          1           1
 Q glutamine           8.1          9           2
 R arginine            7.2          8           2
 S serine              3.6          4           1
 T threonine           4.5          5           2
 V valine              6.3          7           1
 W tryptophan          0.9          1           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290745          1.000   PREDICTED: hypothetical protein XP_002348067 
LOC100287107          1.000   PREDICTED: hypothetical protein XP_002343747 
LOC100128598          0.154   PREDICTED: hypothetical protein 
LOC100128598          0.128   PREDICTED: hypothetical protein 
LOC100128598          0.128   PREDICTED: hypothetical protein 
LOC642574             0.036   PREDICTED: IQ motif and ankyrin repeat domain-conta...
LOC642574             0.036   PREDICTED: IQ motif and ankyrin repeat domain-conta...
LOC100293795          0.026   PREDICTED: hypothetical protein 
LOC100287397          0.026   PREDICTED: hypothetical protein 
LOC100287397          0.026   PREDICTED: hypothetical protein XP_002343164 
TNIK                  0.026   TRAF2 and NCK interacting kinase isoform 6 
TNIK                  0.026   TRAF2 and NCK interacting kinase isoform 5 
TNIK                  0.026   TRAF2 and NCK interacting kinase isoform 2 
TNIK                  0.026   TRAF2 and NCK interacting kinase isoform 1 
MAP7                  0.026   microtubule-associated protein 7 
HDAC4                 0.026   histone deacetylase 4 
CCDC88C               0.021   DVL-binding protein DAPLE 
RAB11FIP4             0.021   RAB11 family interacting protein 4 (class II) 
JAKMIP1               0.021   janus kinase and microtubule interacting protein 1 i...
JAKMIP1               0.021   janus kinase and microtubule interacting protein 1 ...
MAP4K4                0.021   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.021   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.021   mitogen-activated protein kinase kinase kinase kinas...
USP54                 0.021   ubiquitin specific peptidase 54 
STIM1                 0.015   stromal interaction molecule 1 precursor 
HOMER1                0.015   homer 1 
C14orf49              0.015   nesprin-3 
ARHGAP19              0.015   Rho GTPase activating protein 19 
KIF26A                0.015   kinesin family member 26A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press