Guide to the Human Genome
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Name: HSPA12A Sequence: fasta or formatted (675aa) NCBI GI: 119874213
Description:

heat shock 70kDa protein 12A

Referenced in:

Heat-Shock Proteins and Chaperonins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         55           3
 C cysteine            0.7          5           1
 D aspartate           6.1         41           1
 E glutamate           6.2         42           2
 F phenylalanine       5.0         34           1
 G glycine             7.3         49           3
 H histidine           2.1         14           1
 I isoleucine          5.8         39           3
 K lysine              6.8         46           2
 L leucine             8.6         58           2
 M methionine          1.6         11           1
 N asparagine          2.7         18           1
 P proline             4.9         33           2
 Q glutamine           4.1         28           2
 R arginine            4.7         32           2
 S serine              7.3         49           2
 T threonine           6.2         42           2
 V valine              7.1         48           3
 W tryptophan          1.2          8           1
 Y tyrosine            3.4         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock 70kDa protein 12A 
HSPA12B               0.627   heat shock 70kD protein 12B 
HSPA9                 0.009   heat shock 70kDa protein 9 precursor 
DMRT3                 0.005   doublesex and mab-3 related transcription factor 3 [...
FLT3                  0.005   fms-related tyrosine kinase 3 
AATF                  0.004   apoptosis antagonizing transcription factor 
HNRNPR                0.004   heterogeneous nuclear ribonucleoprotein R isoform 3...
HNRNPR                0.004   heterogeneous nuclear ribonucleoprotein R isoform 1...
HNRNPR                0.004   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.004   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
TTN                   0.004   titin isoform N2-A 
TTN                   0.004   titin isoform novex-2 
TTN                   0.004   titin isoform novex-1 
TTN                   0.004   titin isoform N2-B 
ZXDC                  0.004   ZXD family zinc finger C isoform 2 
ZXDC                  0.004   ZXD family zinc finger C isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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