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Search of human proteins with 119703746
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|119703746 electron-transferring-flavoprotein dehydrogenase
precursor [Homo sapiens]
(617 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|119703746 electron-transferring-flavoprotein dehydrogenase pr... 1295 0.0
gi|110611908 mitogen-activated protein kinase kinase kinase kina... 34 0.35
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 34 0.35
gi|91199540 dihydrolipoamide dehydrogenase precursor [Homo sapiens] 34 0.45
gi|116256451 amine oxidase (flavin containing) domain 1 [Homo sa... 33 1.0
gi|205360947 microtubule associated monoxygenase, calponin and L... 33 1.0
gi|226530313 microtubule associated monoxygenase, calponin and L... 33 1.0
gi|8923708 FAD-dependent oxidoreductase domain containing 1 [Hom... 33 1.0
gi|75677576 dyslexia susceptibility 1 candidate 1 isoform c [Hom... 31 2.9
gi|75677567 dyslexia susceptibility 1 candidate 1 isoform b [Hom... 31 2.9
gi|75677570 dyslexia susceptibility 1 candidate 1 isoform a [Hom... 31 2.9
gi|239756484 PREDICTED: hypothetical protein XP_002344998 [Homo ... 31 3.8
gi|239751008 PREDICTED: hypothetical protein XP_002347629 [Homo ... 31 3.8
gi|239745410 PREDICTED: hypothetical protein XP_002343458 [Homo ... 31 3.8
gi|90093355 jumonji C domain containing histone demethylase 1 ho... 31 3.8
gi|38202207 monoamine oxidase B [Homo sapiens] 30 8.6
gi|50301238 glutathione reductase [Homo sapiens] 30 8.6
gi|46397310 polyamine oxidase isoform 4 [Homo sapiens] 30 8.6
gi|46397308 polyamine oxidase isoform 2 [Homo sapiens] 30 8.6
gi|23097272 polyamine oxidase isoform 1 [Homo sapiens] 30 8.6
gi|122939153 nicotinamide nucleotide transhydrogenase [Homo sapi... 30 8.6
gi|122939155 nicotinamide nucleotide transhydrogenase [Homo sapi... 30 8.6
>gi|119703746 electron-transferring-flavoprotein dehydrogenase
precursor [Homo sapiens]
Length = 617
Score = 1295 bits (3351), Expect = 0.0
Identities = 617/617 (100%), Positives = 617/617 (100%)
Query: 1 MLVPLAKLSCLAYQCFHALKIKKNYLPLCATRWSSTSTVPRITTHYTIYPRDKDKRWEGV 60
MLVPLAKLSCLAYQCFHALKIKKNYLPLCATRWSSTSTVPRITTHYTIYPRDKDKRWEGV
Sbjct: 1 MLVPLAKLSCLAYQCFHALKIKKNYLPLCATRWSSTSTVPRITTHYTIYPRDKDKRWEGV 60
Query: 61 NMERFAEEADVVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACLD 120
NMERFAEEADVVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACLD
Sbjct: 61 NMERFAEEADVVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACLD 120
Query: 121 PGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYIVRLGHLV 180
PGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYIVRLGHLV
Sbjct: 121 PGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYIVRLGHLV 180
Query: 181 SWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKATFERGLELHAK 240
SWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKATFERGLELHAK
Sbjct: 181 SWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKATFERGLELHAK 240
Query: 241 VTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELWVIDEKNWKPGRVDHTVGWPLD 300
VTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELWVIDEKNWKPGRVDHTVGWPLD
Sbjct: 241 VTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELWVIDEKNWKPGRVDHTVGWPLD 300
Query: 301 RHTYGGSFLYHLNEGEPLVALGLVVGLDYQNPYLSPFREFQRWKHHPSIRPTLEGGKRIA 360
RHTYGGSFLYHLNEGEPLVALGLVVGLDYQNPYLSPFREFQRWKHHPSIRPTLEGGKRIA
Sbjct: 301 RHTYGGSFLYHLNEGEPLVALGLVVGLDYQNPYLSPFREFQRWKHHPSIRPTLEGGKRIA 360
Query: 361 YGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGILAAESIFNQLTS 420
YGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGILAAESIFNQLTS
Sbjct: 361 YGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGILAAESIFNQLTS 420
Query: 421 ENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGVLGVYGGMIYTGIFYWILRG 480
ENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGVLGVYGGMIYTGIFYWILRG
Sbjct: 421 ENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGVLGVYGGMIYTGIFYWILRG 480
Query: 481 MEPWTLKHKGSDFERLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLR 540
MEPWTLKHKGSDFERLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLR
Sbjct: 481 MEPWTLKHKGSDFERLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLR 540
Query: 541 DDSIPVNRNLSIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVHCKTCDIKDPSQN 600
DDSIPVNRNLSIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVHCKTCDIKDPSQN
Sbjct: 541 DDSIPVNRNLSIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVHCKTCDIKDPSQN 600
Query: 601 INWVVPEGGGGPAYNGM 617
INWVVPEGGGGPAYNGM
Sbjct: 601 INWVVPEGGGGPAYNGM 617
>gi|110611908 mitogen-activated protein kinase kinase kinase kinase
1 isoform 1 [Homo sapiens]
Length = 821
Score = 34.3 bits (77), Expect = 0.35
Identities = 46/191 (24%), Positives = 70/191 (36%), Gaps = 13/191 (6%)
Query: 62 MERFAEEADVVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACLDP 121
+ER A I P L A + + K R C V + A G L GA
Sbjct: 571 LERKETRAGNPIAHISPHRLLARKNMVSTKIQDTKGCRACCVAEGASSGGPFLCGALETS 630
Query: 122 GAFKELFPDW------KEKGAPLNTPVTEDRFGILT----EKYRIPVPILPGLPMNNHGN 171
+ + ++ PL TP++ F +LT E + + + PG P +
Sbjct: 631 VVLLQWYQPMNKFLLVRQVLFPLPTPLSV--FALLTGPGSELPAVCIGVSPGRPGKSVLF 688
Query: 172 YIVRLGHLVSWMGEQA-EALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKAT 230
+ VR G L W+GE + E G V+ DGSVK + ++ P+
Sbjct: 689 HTVRFGALSCWLGEMSTEHRGPVQVTQVEEDMVMVLMDGSVKLVTPEGSPVRGLRTPEIP 748
Query: 231 FERGLELHAKV 241
+E A V
Sbjct: 749 MTEAVEAVAMV 759
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 34.3 bits (77), Expect = 0.35
Identities = 46/191 (24%), Positives = 70/191 (36%), Gaps = 13/191 (6%)
Query: 62 MERFAEEADVVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACLDP 121
+ER A I P L A + + K R C V + A G L GA
Sbjct: 571 LERKETRAGNPIAHISPHRLLARKNMVSTKIQDTKGCRACCVAEGASSGGPFLCGALETS 630
Query: 122 GAFKELFPDW------KEKGAPLNTPVTEDRFGILT----EKYRIPVPILPGLPMNNHGN 171
+ + ++ PL TP++ F +LT E + + + PG P +
Sbjct: 631 VVLLQWYQPMNKFLLVRQVLFPLPTPLSV--FALLTGPGSELPAVCIGVSPGRPGKSVLF 688
Query: 172 YIVRLGHLVSWMGEQA-EALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKAT 230
+ VR G L W+GE + E G V+ DGSVK + ++ P+
Sbjct: 689 HTVRFGALSCWLGEMSTEHRGPVQVTQVEEDMVMVLMDGSVKLVTPEGSPVRGLRTPEIP 748
Query: 231 FERGLELHAKV 241
+E A V
Sbjct: 749 MTEAVEAVAMV 759
>gi|91199540 dihydrolipoamide dehydrogenase precursor [Homo sapiens]
Length = 509
Score = 33.9 bits (76), Expect = 0.45
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 68 EADVVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACLDPG 122
+ADV ++G+GP G AA++ QL + +EK TL G CL+ G
Sbjct: 41 DADVTVIGSGPGGYVAAIKAAQLG------FKTVCIEK-----NETLGGTCLNVG 84
>gi|116256451 amine oxidase (flavin containing) domain 1 [Homo
sapiens]
Length = 590
Score = 32.7 bits (73), Expect = 1.0
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 11/55 (20%)
Query: 71 VVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACLDPGAFK 125
V+I+GAGPAGL+AA +L H I+V ++E +IG G D +FK
Sbjct: 253 VIIIGAGPAGLAAARQL------HNFGIKVTVLEAKDRIG-----GRVWDDKSFK 296
>gi|205360947 microtubule associated monoxygenase, calponin and LIM
domain containing 1 isoform 1 [Homo sapiens]
Length = 1067
Score = 32.7 bits (73), Expect = 1.0
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 22/99 (22%)
Query: 16 FHALKIKKNYLPLCATRWSSTSTVPRITTHYTIYPRDKDKRWEGVNMERFAEEADVVIVG 75
+H +K + NY WS+ S ++ DK R ++VG
Sbjct: 48 YHKIKDQLNY-------WSAKSLWTKL---------DKRAGQPVYQQGRACTSTKCLVVG 91
Query: 76 AGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTL 114
AGP GL AV L L RV LVEK + H +
Sbjct: 92 AGPCGLRVAVELALLGA------RVVLVEKRTKFSRHNV 124
>gi|226530313 microtubule associated monoxygenase, calponin and LIM
domain containing 1 isoform 2 [Homo sapiens]
Length = 981
Score = 32.7 bits (73), Expect = 1.0
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 22/99 (22%)
Query: 16 FHALKIKKNYLPLCATRWSSTSTVPRITTHYTIYPRDKDKRWEGVNMERFAEEADVVIVG 75
+H +K + NY WS+ S ++ DK R ++VG
Sbjct: 48 YHKIKDQLNY-------WSAKSLWTKL---------DKRAGQPVYQQGRACTSTKCLVVG 91
Query: 76 AGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTL 114
AGP GL AV L L RV LVEK + H +
Sbjct: 92 AGPCGLRVAVELALLGA------RVVLVEKRTKFSRHNV 124
>gi|8923708 FAD-dependent oxidoreductase domain containing 1 [Homo
sapiens]
Length = 486
Score = 32.7 bits (73), Expect = 1.0
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 67 EEADVVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEK 105
E +DVVIVG G GLS A LK+L + IRV +VE+
Sbjct: 62 EHSDVVIVGGGVLGLSVAYWLKKLE-SRRGAIRVLVVER 99
>gi|75677576 dyslexia susceptibility 1 candidate 1 isoform c [Homo
sapiens]
Length = 381
Score = 31.2 bits (69), Expect = 2.9
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 539 LRDDSIPVNRNL-SIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVH---CKTCDI 594
L++DSIP R++ SI R P + E E+ + Q A+ ++ + CD+
Sbjct: 224 LKEDSIPAPRSVGSIKINFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIAELCDL 283
Query: 595 KDPSQNINWVVPEG 608
K+ +N W+ +G
Sbjct: 284 KEEEKNPEWLKDKG 297
>gi|75677567 dyslexia susceptibility 1 candidate 1 isoform b [Homo
sapiens]
Length = 376
Score = 31.2 bits (69), Expect = 2.9
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 539 LRDDSIPVNRNL-SIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVH---CKTCDI 594
L++DSIP R++ SI R P + E E+ + Q A+ ++ + CD+
Sbjct: 224 LKEDSIPAPRSVGSIKINFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIAELCDL 283
Query: 595 KDPSQNINWVVPEG 608
K+ +N W+ +G
Sbjct: 284 KEEEKNPEWLKDKG 297
>gi|75677570 dyslexia susceptibility 1 candidate 1 isoform a [Homo
sapiens]
Length = 420
Score = 31.2 bits (69), Expect = 2.9
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 539 LRDDSIPVNRNL-SIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVH---CKTCDI 594
L++DSIP R++ SI R P + E E+ + Q A+ ++ + CD+
Sbjct: 224 LKEDSIPAPRSVGSIKINFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIAELCDL 283
Query: 595 KDPSQNINWVVPEG 608
K+ +N W+ +G
Sbjct: 284 KEEEKNPEWLKDKG 297
>gi|239756484 PREDICTED: hypothetical protein XP_002344998 [Homo
sapiens]
Length = 157
Score = 30.8 bits (68), Expect = 3.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 577 FRLQINAQNCVHCKTCDIKDPSQNINWVVPEGG 609
FR ++++ V C +C ++ + I WV EGG
Sbjct: 125 FRARLSSSTPVTCMSCTVRSKGKGIRWVWEEGG 157
>gi|239751008 PREDICTED: hypothetical protein XP_002347629 [Homo
sapiens]
Length = 157
Score = 30.8 bits (68), Expect = 3.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 577 FRLQINAQNCVHCKTCDIKDPSQNINWVVPEGG 609
FR ++++ V C +C ++ + I WV EGG
Sbjct: 125 FRARLSSSTPVTCMSCTVRSKGKGIRWVWEEGG 157
>gi|239745410 PREDICTED: hypothetical protein XP_002343458 [Homo
sapiens]
Length = 157
Score = 30.8 bits (68), Expect = 3.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 577 FRLQINAQNCVHCKTCDIKDPSQNINWVVPEGG 609
FR ++++ V C +C ++ + I WV EGG
Sbjct: 125 FRARLSSSTPVTCMSCTVRSKGKGIRWVWEEGG 157
>gi|90093355 jumonji C domain containing histone demethylase 1
homolog D [Homo sapiens]
Length = 941
Score = 30.8 bits (68), Expect = 3.8
Identities = 38/159 (23%), Positives = 57/159 (35%), Gaps = 41/159 (25%)
Query: 293 HTVGWPLDRHTYGGSFLYHLNEGEPLVALGLVVGLDYQNPYLSPFREFQRWKHHPSIRPT 352
H V D +GG+FL++LN G L + L + + PF E W ++ T
Sbjct: 354 HAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKNLLET 413
Query: 353 LEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGILAAE 412
L + L E GFQ P V +K HTA+K
Sbjct: 414 L----------KELREDGFQ----------------PQTYLVQGVKALHTALKLW----- 442
Query: 413 SIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKELYSV 451
++ + + H E DN++ + KEL V
Sbjct: 443 ----------MKKELVSEHAFEIPDNVRPGHLIKELSKV 471
>gi|38202207 monoamine oxidase B [Homo sapiens]
Length = 520
Score = 29.6 bits (65), Expect = 8.6
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 66 AEEADVVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHT 113
+ + DVV+VG G +G++AA L H+ + V ++E ++G T
Sbjct: 2 SNKCDVVVVGGGISGMAAAKLL------HDSGLNVVVLEARDRVGGRT 43
>gi|50301238 glutathione reductase [Homo sapiens]
Length = 522
Score = 29.6 bits (65), Expect = 8.6
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 21/108 (19%)
Query: 70 DVVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACLDPGAFKE--- 126
D +++G G GL++A R +L +AA + +H L G C++ G +
Sbjct: 66 DYLVIGGGSGGLASARRAAELGA------------RAAVVESHKLGGTCVNVGCVPKKVM 113
Query: 127 ----LFPDWKEKGAPLNTPVTEDRFG--ILTEKYRIPVPILPGLPMNN 168
+ ++ A P E +F ++ EK V L + NN
Sbjct: 114 WNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNN 161
>gi|46397310 polyamine oxidase isoform 4 [Homo sapiens]
Length = 486
Score = 29.6 bits (65), Expect = 8.6
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 71 VVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACLDPGAFKELFPD 130
V++VG G AGL AA RL H + ++E A+ G S C G E+
Sbjct: 16 VLVVGGGIAGLGAAQRL----CGHSAFPHLRVLEATARAGGRIRSERCF--GGVVEVGAH 69
Query: 131 W---KEKGAPLNTPVTEDRFGILTEK 153
W +G P+ E +G+L EK
Sbjct: 70 WIHGPSRGNPVFQLAAE--YGLLGEK 93
>gi|46397308 polyamine oxidase isoform 2 [Homo sapiens]
Length = 325
Score = 29.6 bits (65), Expect = 8.6
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 71 VVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACLDPGAFKELFPD 130
V++VG G AGL AA RL H + ++E A+ G S C G E+
Sbjct: 16 VLVVGGGIAGLGAAQRL----CGHSAFPHLRVLEATARAGGRIRSERCF--GGVVEVGAH 69
Query: 131 W---KEKGAPLNTPVTEDRFGILTEK 153
W +G P+ E +G+L EK
Sbjct: 70 WIHGPSRGNPVFQLAAE--YGLLGEK 93
>gi|23097272 polyamine oxidase isoform 1 [Homo sapiens]
Length = 511
Score = 29.6 bits (65), Expect = 8.6
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 71 VVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACLDPGAFKELFPD 130
V++VG G AGL AA RL H + ++E A+ G S C G E+
Sbjct: 16 VLVVGGGIAGLGAAQRL----CGHSAFPHLRVLEATARAGGRIRSERCF--GGVVEVGAH 69
Query: 131 W---KEKGAPLNTPVTEDRFGILTEK 153
W +G P+ E +G+L EK
Sbjct: 70 WIHGPSRGNPVFQLAAE--YGLLGEK 93
>gi|122939153 nicotinamide nucleotide transhydrogenase [Homo
sapiens]
Length = 1086
Score = 29.6 bits (65), Expect = 8.6
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 69 ADVVIVGAGPAGLSAAVRLKQL-AVAHEKDIRVCLVEKAAQIGAHTL 114
A ++IVG G AGL++A K + A+ D R +E+ +GA L
Sbjct: 228 AKILIVGGGVAGLASAGAAKSMGAIVRGFDTRAAALEQFKSLGAEPL 274
>gi|122939155 nicotinamide nucleotide transhydrogenase [Homo
sapiens]
Length = 1086
Score = 29.6 bits (65), Expect = 8.6
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 69 ADVVIVGAGPAGLSAAVRLKQL-AVAHEKDIRVCLVEKAAQIGAHTL 114
A ++IVG G AGL++A K + A+ D R +E+ +GA L
Sbjct: 228 AKILIVGGGVAGLASAGAAKSMGAIVRGFDTRAAALEQFKSLGAEPL 274
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.139 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,713,582
Number of Sequences: 37866
Number of extensions: 1299570
Number of successful extensions: 2388
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2372
Number of HSP's gapped (non-prelim): 27
length of query: 617
length of database: 18,247,518
effective HSP length: 108
effective length of query: 509
effective length of database: 14,157,990
effective search space: 7206416910
effective search space used: 7206416910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.