Guide to the Human Genome
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Name: LOC100287963 Sequence: fasta or formatted (157aa) NCBI GI: 239745410
Description:

PREDICTED: hypothetical protein XP_002343458

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         15           3
 C cysteine            3.8          6           1
 D aspartate           1.9          3           1
 E glutamate           6.4         10           2
 F phenylalanine       1.9          3           1
 G glycine            12.1         19           4
 H histidine           2.5          4           1
 I isoleucine          1.9          3           1
 K lysine              4.5          7           1
 L leucine             9.6         15           1
 M methionine          7.6         12           2
 N asparagine          0.6          1           1
 P proline             3.2          5           1
 Q glutamine           2.5          4           1
 R arginine            8.9         14           2
 S serine              5.7          9           3
 T threonine           2.5          4           1
 V valine              7.0         11           2
 W tryptophan          7.0         11           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343458 
LOC100291598          1.000   PREDICTED: hypothetical protein XP_002344998 
LOC100291087          1.000   PREDICTED: hypothetical protein XP_002347629 
ETFDH                 0.019   electron-transferring-flavoprotein dehydrogenase pr...
CRY1                  0.016   cryptochrome 1 (photolyase-like) 
ITPKC                 0.016   inositol 1,4,5-trisphosphate 3-kinase C 
GBA2                  0.013   bile acid beta-glucosidase 
CCDC142               0.006   coiled-coil domain containing 142 
VCAN                  0.006   versican isoform 2 
VCAN                  0.006   versican isoform 1 
DNHD1                 0.006   dynein heavy chain domain 1 isoform 1 
LOC100293745          0.006   PREDICTED: hypothetical protein 
LOC100291297          0.006   PREDICTED: hypothetical protein XP_002348270 
LOC100289120          0.006   PREDICTED: hypothetical protein XP_002343892 
SNRK                  0.006   SNF related kinase 
SNRK                  0.006   SNF related kinase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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