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Search of human proteins with 239756590
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo
sapiens]
(120 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo ... 250 2e-67
gi|239751084 PREDICTED: hypothetical protein XP_002347710 [Homo ... 250 2e-67
gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo ... 250 2e-67
gi|169204982 PREDICTED: hypothetical protein [Homo sapiens] 50 3e-07
gi|169205503 PREDICTED: hypothetical protein [Homo sapiens] 50 3e-07
gi|169204452 PREDICTED: hypothetical protein [Homo sapiens] 50 3e-07
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens] 45 1e-05
gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens] 40 3e-04
gi|148664226 plakophilin 2 isoform 2b [Homo sapiens] 40 4e-04
gi|116256455 zinc finger protein 429 [Homo sapiens] 38 0.002
gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo s... 37 0.003
gi|59859882 baculoviral IAP repeat-containing protein 5 isoform ... 33 0.038
gi|9624988 hypothetical protein LOC56260 [Homo sapiens] 33 0.065
gi|148277022 selenoprotein P isoform 2 [Homo sapiens] 32 0.14
gi|20336212 guanidinoacetate N-methyltransferase isoform b [Homo... 31 0.19
gi|11038659 ADAM metallopeptidase with thrombospondin type 1 mot... 31 0.19
gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens] 30 0.55
gi|144953913 zinc finger protein 714 [Homo sapiens] 30 0.55
gi|217035140 zinc finger protein 669 isoform 2 [Homo sapiens] 29 0.72
gi|217035138 zinc finger protein 669 isoform 1 [Homo sapiens] 29 0.72
gi|33356179 transcription termination factor, RNA polymerase I [... 29 0.94
gi|118600985 zinc finger protein 91 [Homo sapiens] 28 1.6
gi|115298678 complement component 3 precursor [Homo sapiens] 28 2.1
gi|169218213 PREDICTED: similar to complement component C3, part... 28 2.1
gi|4501959 alpha-1B-adrenergic receptor [Homo sapiens] 27 3.6
>gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo
sapiens]
Length = 120
Score = 250 bits (638), Expect = 2e-67
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ 60
MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ
Sbjct: 1 MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ 60
Query: 61 PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY
Sbjct: 61 PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
>gi|239751084 PREDICTED: hypothetical protein XP_002347710 [Homo
sapiens]
Length = 120
Score = 250 bits (638), Expect = 2e-67
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ 60
MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ
Sbjct: 1 MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ 60
Query: 61 PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY
Sbjct: 61 PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
>gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo
sapiens]
Length = 120
Score = 250 bits (638), Expect = 2e-67
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ 60
MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ
Sbjct: 1 MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ 60
Query: 61 PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY
Sbjct: 61 PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
>gi|169204982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 50.4 bits (119), Expect = 3e-07
Identities = 25/36 (69%), Positives = 26/36 (72%)
Query: 85 VAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
V HT NPSTLGGRGG I GQE KTSL M +P LY
Sbjct: 82 VPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
>gi|169205503 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 50.4 bits (119), Expect = 3e-07
Identities = 25/36 (69%), Positives = 26/36 (72%)
Query: 85 VAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
V HT NPSTLGGRGG I GQE KTSL M +P LY
Sbjct: 82 VPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
>gi|169204452 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 50.4 bits (119), Expect = 3e-07
Identities = 25/36 (69%), Positives = 26/36 (72%)
Query: 85 VAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
V HT NPSTLGGRGG I GQE KTSL M +P LY
Sbjct: 82 VPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
Length = 374
Score = 45.4 bits (106), Expect = 1e-05
Identities = 21/30 (70%), Positives = 22/30 (73%)
Query: 74 YIKKERLWLGPVAHTYNPSTLGGRGGWITR 103
Y + R LG VAH NPSTLGGRGGWITR
Sbjct: 337 YKEYYRAGLGAVAHACNPSTLGGRGGWITR 366
>gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens]
Length = 342
Score = 40.4 bits (93), Expect = 3e-04
Identities = 21/33 (63%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 74 YIKKERLWLGPVAHTYNPSTLGGRGGWITRGQE 106
YI K+ L L VAHT NPSTLGG+G WIT +E
Sbjct: 306 YICKKDL-LAAVAHTCNPSTLGGQGEWITGSRE 337
>gi|148664226 plakophilin 2 isoform 2b [Homo sapiens]
Length = 881
Score = 40.0 bits (92), Expect = 4e-04
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 72 TTYIKKERLWLGPVAHTYNPSTLGGRGGWITR 103
T ++ W G VAH NPSTLGG+GG ITR
Sbjct: 462 TVNLRSRNGWPGAVAHACNPSTLGGQGGRITR 493
>gi|116256455 zinc finger protein 429 [Homo sapiens]
Length = 674
Score = 37.7 bits (86), Expect = 0.002
Identities = 17/22 (77%), Positives = 18/22 (81%)
Query: 82 LGPVAHTYNPSTLGGRGGWITR 103
+G VAH NPSTLGGRGG ITR
Sbjct: 645 MGVVAHACNPSTLGGRGGRITR 666
>gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo
sapiens]
Length = 291
Score = 37.4 bits (85), Expect = 0.003
Identities = 17/21 (80%), Positives = 17/21 (80%)
Query: 83 GPVAHTYNPSTLGGRGGWITR 103
G VAH NPSTLGGRGG ITR
Sbjct: 266 GAVAHACNPSTLGGRGGRITR 286
>gi|59859882 baculoviral IAP repeat-containing protein 5 isoform 3
[Homo sapiens]
Length = 165
Score = 33.5 bits (75), Expect = 0.038
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 83 GPVAHTYNPSTLGGRGGWITRGQEFKTS 110
G VA+ N STLGGRGG ITR + K S
Sbjct: 77 GTVAYACNTSTLGGRGGRITREEHKKHS 104
>gi|9624988 hypothetical protein LOC56260 [Homo sapiens]
Length = 159
Score = 32.7 bits (73), Expect = 0.065
Identities = 16/22 (72%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
Query: 1 MPIIPSLWE--AGRSLEARSSK 20
MP+IP+LWE AGRS E RSSK
Sbjct: 42 MPVIPALWEAKAGRSPEVRSSK 63
>gi|148277022 selenoprotein P isoform 2 [Homo sapiens]
Length = 411
Score = 31.6 bits (70), Expect = 0.14
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 82 LGPVAHTYNPSTLGGRGGWITR 103
L VAH NPSTLGG+G ITR
Sbjct: 5 LDAVAHACNPSTLGGQGRRITR 26
>gi|20336212 guanidinoacetate N-methyltransferase isoform b [Homo
sapiens]
Length = 269
Score = 31.2 bits (69), Expect = 0.19
Identities = 15/22 (68%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 81 WL-GPVAHTYNPSTLGGRGGWI 101
WL G VA YNPST+ GRGG I
Sbjct: 247 WLPGAVAQVYNPSTVEGRGGQI 268
>gi|11038659 ADAM metallopeptidase with thrombospondin type 1 motif,
2 isoform 2 [Homo sapiens]
Length = 566
Score = 31.2 bits (69), Expect = 0.19
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 83 GPVAHTYNPSTLGGRGGWI 101
G VAH PSTLGG+G WI
Sbjct: 547 GAVAHACYPSTLGGQGRWI 565
>gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens]
Length = 858
Score = 29.6 bits (65), Expect = 0.55
Identities = 12/16 (75%), Positives = 16/16 (100%)
Query: 102 TRGQEFKTSLANMVEP 117
+RGQEF+TSLAN+V+P
Sbjct: 681 SRGQEFETSLANIVKP 696
>gi|144953913 zinc finger protein 714 [Homo sapiens]
Length = 555
Score = 29.6 bits (65), Expect = 0.55
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 68 FSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITR 103
F+ +T K ++ G VAH NP+TL G G I R
Sbjct: 490 FNQSSTLTKHRKIQQGMVAHACNPNTLRGLGEQIAR 525
>gi|217035140 zinc finger protein 669 isoform 2 [Homo sapiens]
Length = 378
Score = 29.3 bits (64), Expect = 0.72
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 89 YNPSTLGGRGGWI 101
YNPSTLGG+G WI
Sbjct: 365 YNPSTLGGQGVWI 377
>gi|217035138 zinc finger protein 669 isoform 1 [Homo sapiens]
Length = 464
Score = 29.3 bits (64), Expect = 0.72
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 89 YNPSTLGGRGGWI 101
YNPSTLGG+G WI
Sbjct: 451 YNPSTLGGQGVWI 463
>gi|33356179 transcription termination factor, RNA polymerase I
[Homo sapiens]
Length = 905
Score = 28.9 bits (63), Expect = 0.94
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 75 IKKERLWLGP-VAHTYNPSTLGGRGGWI 101
I+KE P +AH N STLGG+G WI
Sbjct: 877 IEKESEGQAPCMAHACNSSTLGGQGRWI 904
>gi|118600985 zinc finger protein 91 [Homo sapiens]
Length = 1191
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 102 TRGQEFKTSLANMVEPCLY 120
+RGQE +T LAN V+P LY
Sbjct: 1173 SRGQEMETILANTVKPLLY 1191
>gi|115298678 complement component 3 precursor [Homo sapiens]
Length = 1663
Score = 27.7 bits (60), Expect = 2.1
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 25 LIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ 60
+++V + Y F++ +TI+ G +LY ++ +N++
Sbjct: 120 VVLVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHK 155
>gi|169218213 PREDICTED: similar to complement component C3, partial
[Homo sapiens]
Length = 1295
Score = 27.7 bits (60), Expect = 2.1
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 25 LIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ 60
+++V + Y F++ +TI+ G +LY ++ +N++
Sbjct: 120 VVLVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHK 155
>gi|4501959 alpha-1B-adrenergic receptor [Homo sapiens]
Length = 520
Score = 26.9 bits (58), Expect = 3.6
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 76 KKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSL 111
++ R LG A+TY P T RGG + R Q K SL
Sbjct: 375 RRRRRRLGGCAYTYRPWT---RGGSLERSQSRKDSL 407
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.140 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,668,901
Number of Sequences: 37866
Number of extensions: 176954
Number of successful extensions: 408
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 27
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.