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Search of human proteins with 239756511
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756511 PREDICTED: hypothetical protein [Homo sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756511 PREDICTED: hypothetical protein [Homo sapiens] 292 5e-80
gi|4758416 golgi-specific brefeldin A resistant guanine nucleoti... 30 0.63
gi|194306647 protein phosphatase 1, regulatory subunit 14D isofo... 29 1.1
gi|8923226 protein phosphatase 1, regulatory subunit 14D isoform... 29 1.1
gi|239756806 PREDICTED: hypothetical protein [Homo sapiens] 29 1.4
gi|239755104 PREDICTED: hypothetical protein [Homo sapiens] 29 1.4
gi|239751296 PREDICTED: hypothetical protein XP_002347798 [Homo ... 29 1.4
gi|239749617 PREDICTED: hypothetical protein XP_002347103 [Homo ... 29 1.4
gi|239745793 PREDICTED: hypothetical protein XP_002343590 [Homo ... 29 1.4
gi|239743886 PREDICTED: hypothetical protein XP_002342986 [Homo ... 29 1.4
gi|90903231 huntingtin [Homo sapiens] 27 4.1
gi|239755398 PREDICTED: hypothetical protein [Homo sapiens] 27 4.1
gi|33519450 NLR family, pyrin domain containing 9 [Homo sapiens] 27 4.1
gi|55749600 spire homolog 2 [Homo sapiens] 27 5.4
gi|6912446 potassium voltage-gated channel, subfamily H, member ... 27 7.0
gi|239757714 PREDICTED: hypothetical protein XP_002345529 [Homo ... 27 7.0
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 27 7.0
gi|33636756 MAP/microtubule affinity-regulating kinase 4 [Homo s... 27 7.0
gi|13027826 growth hormone 2 isoform 3 [Homo sapiens] 27 7.0
gi|87241872 ring finger protein 151 [Homo sapiens] 27 7.0
gi|239787844 testis expressed 10 isoform 2 [Homo sapiens] 26 9.1
gi|239787838 testis expressed 10 isoform 1 [Homo sapiens] 26 9.1
gi|239747214 PREDICTED: hypothetical protein XP_002346940 [Homo ... 26 9.1
gi|239741020 PREDICTED: hypothetical protein XP_002342065 [Homo ... 26 9.1
>gi|239756511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 292 bits (748), Expect = 5e-80
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MAESLAHPGCFHPFFGILRAGWSRSFPSLLTLAHSRWLEQVLQVERRARFSGALARREHT 60
MAESLAHPGCFHPFFGILRAGWSRSFPSLLTLAHSRWLEQVLQVERRARFSGALARREHT
Sbjct: 1 MAESLAHPGCFHPFFGILRAGWSRSFPSLLTLAHSRWLEQVLQVERRARFSGALARREHT 60
Query: 61 PSPHGAPDCLKVALARATSGTEAVAGRSWASGLRRSGRVSSAQWRHRCFTRVCREMRPLR 120
PSPHGAPDCLKVALARATSGTEAVAGRSWASGLRRSGRVSSAQWRHRCFTRVCREMRPLR
Sbjct: 61 PSPHGAPDCLKVALARATSGTEAVAGRSWASGLRRSGRVSSAQWRHRCFTRVCREMRPLR 120
Query: 121 PLQSRRWARRGLGFQICVH 139
PLQSRRWARRGLGFQICVH
Sbjct: 121 PLQSRRWARRGLGFQICVH 139
>gi|4758416 golgi-specific brefeldin A resistant guanine nucleotide
exchange factor 1 [Homo sapiens]
Length = 1859
Score = 30.0 bits (66), Expect = 0.63
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 12 HPFFGILRAGWSRSFPSLLTLAHSRWL-EQVLQVERRARFSGALA-RREHTPSPHGAPDC 69
H ILR GW ++L L ++ L + +++VE +G ++ +RE TPS G
Sbjct: 1017 HRHGDILREGWKNIMEAMLQLFRAQLLPKAMIEVEDFVDPNGKISLQREETPSNRGESTV 1076
Query: 70 LKVALARATSGTEAVAGRSWASGLRRSGRVS 100
L SG E + R ++ + + RV+
Sbjct: 1077 LSFVSWLTLSGPEQSSVRGPSTENQEAKRVA 1107
>gi|194306647 protein phosphatase 1, regulatory subunit 14D isoform
2 [Homo sapiens]
Length = 200
Score = 29.3 bits (64), Expect = 1.1
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 60 TPSPHGAPDCLKVALARATSGTEAVAGRSWASGLRRSGRVSSAQWRHRCFTRVCREMRPL 119
+PSP G C KV WASG RR+ S H +++ R RP
Sbjct: 11 SPSPDGENPCKKV---------------HWASGRRRTSSTDSESKSHPDSSKIPRSRRPS 55
Query: 120 R 120
R
Sbjct: 56 R 56
>gi|8923226 protein phosphatase 1, regulatory subunit 14D isoform 1
[Homo sapiens]
Length = 145
Score = 29.3 bits (64), Expect = 1.1
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 60 TPSPHGAPDCLKVALARATSGTEAVAGRSWASGLRRSGRVSSAQWRHRCFTRVCREMRPL 119
+PSP G C KV WASG RR+ S H +++ R RP
Sbjct: 11 SPSPDGENPCKKV---------------HWASGRRRTSSTDSESKSHPDSSKIPRSRRPS 55
Query: 120 R 120
R
Sbjct: 56 R 56
>gi|239756806 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 28.9 bits (63), Expect = 1.4
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 45 ERRARFSGALARREHTPSPHGAPDCLKVALARATSGTEA 83
ERR + G R + P PHGA D + SGT A
Sbjct: 156 ERRLQLHGVQQRAQERPLPHGAGDAGRGVRGWGKSGTPA 194
>gi|239755104 PREDICTED: hypothetical protein [Homo sapiens]
Length = 191
Score = 28.9 bits (63), Expect = 1.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 56 RREHTPSPHGAPDCLKVALARATSGTEAVAGR 87
R +PSP APD L ++L R G E AGR
Sbjct: 140 RDSKSPSPPTAPDPLPLSLQRRVCGRERDAGR 171
>gi|239751296 PREDICTED: hypothetical protein XP_002347798 [Homo
sapiens]
Length = 211
Score = 28.9 bits (63), Expect = 1.4
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 45 ERRARFSGALARREHTPSPHGAPDCLKVALARATSGTEA 83
ERR + G R + P PHGA D + SGT A
Sbjct: 156 ERRLQLHGVQQRAQERPLPHGAGDAGRGVRGWGKSGTPA 194
>gi|239749617 PREDICTED: hypothetical protein XP_002347103 [Homo
sapiens]
Length = 191
Score = 28.9 bits (63), Expect = 1.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 56 RREHTPSPHGAPDCLKVALARATSGTEAVAGR 87
R +PSP APD L ++L R G E AGR
Sbjct: 140 RDSKSPSPPTAPDPLPLSLQRRVCGRERDAGR 171
>gi|239745793 PREDICTED: hypothetical protein XP_002343590 [Homo
sapiens]
Length = 211
Score = 28.9 bits (63), Expect = 1.4
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 45 ERRARFSGALARREHTPSPHGAPDCLKVALARATSGTEA 83
ERR + G R + P PHGA D + SGT A
Sbjct: 156 ERRLQLHGVQQRAQERPLPHGAGDAGRGVRGWGKSGTPA 194
>gi|239743886 PREDICTED: hypothetical protein XP_002342986 [Homo
sapiens]
Length = 191
Score = 28.9 bits (63), Expect = 1.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 56 RREHTPSPHGAPDCLKVALARATSGTEAVAGR 87
R +PSP APD L ++L R G E AGR
Sbjct: 140 RDSKSPSPPTAPDPLPLSLQRRVCGRERDAGR 171
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 27.3 bits (59), Expect = 4.1
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 16 GILRAGWSRSFPSLLTLAHSRWLEQVLQVERRARFSG-ALAR----REHTPSPHGAPDCL 70
G++ +G S PS++ R LE++L E+ +R +L + R + SPH A L
Sbjct: 2862 GVMLSGSEESTPSIIYHCALRGLERLLLSEQLSRLDAESLVKLSVDRVNVHSPHRAMAAL 2921
Query: 71 KVALARATSGTEAVA 85
+ L +G E V+
Sbjct: 2922 GLMLTCMYTGKEKVS 2936
>gi|239755398 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 27.3 bits (59), Expect = 4.1
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 75 ARATSGTEAVAGRSWASGLRRSGRVSSAQWR 105
ARA S AGR W G GR ++A WR
Sbjct: 65 ARAFSAASCQAGRPWRCG-AAGGRAAAALWR 94
>gi|33519450 NLR family, pyrin domain containing 9 [Homo sapiens]
Length = 991
Score = 27.3 bits (59), Expect = 4.1
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 1 MAESLAHPGCFHPFFGILRAGWSRSFPSL----------LTLAHSRWLEQVLQV 44
+ E+L+HP C G+ ++G+ + LT++H W+++ ++
Sbjct: 933 LCEALSHPDCALQMLGLHKSGFDEETQKILMSVEEKIPHLTISHGPWIDEEYKI 986
>gi|55749600 spire homolog 2 [Homo sapiens]
Length = 714
Score = 26.9 bits (58), Expect = 5.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 106 HRCFTRVCREMRPLRPLQSRRWARRGLGFQICV 138
H ++ R LRP++ WA RG G C+
Sbjct: 343 HEKILEEIKQERRLRPVRGEGWAARGFGSLPCI 375
>gi|6912446 potassium voltage-gated channel, subfamily H, member 4
[Homo sapiens]
Length = 1017
Score = 26.6 bits (57), Expect = 7.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 51 SGALARREHTPSPHGAPDC 69
S ALA + H+ SPHG P C
Sbjct: 783 SPALAGQGHSASPHGPPRC 801
>gi|239757714 PREDICTED: hypothetical protein XP_002345529 [Homo
sapiens]
Length = 764
Score = 26.6 bits (57), Expect = 7.0
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 7 HPGC--FHPFFGILR-AGWSRSFPSLLTLAHSRWLEQVLQVERRARFSGALARREHTPSP 63
H GC HP AG + SF L + HSR L V E A + H P
Sbjct: 25 HTGCTVIHPNGSYAAGAGETWSFTRQLAVLHSRLLPGVAMKECDAAYWRRTKPHHHPRKP 84
Query: 64 HGAPDC 69
+ P C
Sbjct: 85 YQLPTC 90
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 26.6 bits (57), Expect = 7.0
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 7 HPGC--FHPFFGILR-AGWSRSFPSLLTLAHSRWLEQVLQVERRARFSGALARREHTPSP 63
H GC HP AG + SF L + HSR L V E A + H P
Sbjct: 25 HTGCTVIHPNGSYAAGAGETWSFTRQLAVLHSRLLPGVAMKECDAAYWRRTKPHHHPRKP 84
Query: 64 HGAPDC 69
+ P C
Sbjct: 85 YQLPTC 90
>gi|33636756 MAP/microtubule affinity-regulating kinase 4 [Homo
sapiens]
Length = 688
Score = 26.6 bits (57), Expect = 7.0
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 54 LARREHTPSPHGAPDCLKVALARA----TSGTEAVAGRSWASGLRRSGRVSSAQWRHRCF 109
L R+ GAP L +A RA T+GT + G S + G R S Q RH F
Sbjct: 367 LGRKTEEGGDRGAPG-LALARVRAPSDTTNGTSSSKGTSHSKGQRSSSSTYHRQRRHSDF 425
>gi|13027826 growth hormone 2 isoform 3 [Homo sapiens]
Length = 245
Score = 26.6 bits (57), Expect = 7.0
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 78 TSGTEAVAGRSWASGLRRSGRVSSAQWRHRCFTRVCREMRPLRPLQSRRWA 128
T+G +GR+W S+A WR C P+ P Q W+
Sbjct: 184 TTGCSTASGRTWTRSRHSCASCSAALWR-AAVASSCPGGIPVTPPQCLSWS 233
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 26.6 bits (57), Expect = 7.0
Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
Query: 12 HPFFGILRAGWS----RSFPSLLTLAHS-RWLEQVLQVERRARFSGALARREHTPSPHGA 66
H + L WS R P LL+L RWL+Q V RR + E T GA
Sbjct: 158 HNCYRELHNAWSVRQERRRPLLLSLLRRVRWLDQATSVVRRELAELSNFLEEDTALLEGA 217
Query: 67 PDCLKVALARATSGTEAV 84
P A G E V
Sbjct: 218 PQEEAEAAPEGNVGAEVV 235
>gi|239787844 testis expressed 10 isoform 2 [Homo sapiens]
Length = 913
Score = 26.2 bits (56), Expect = 9.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 87 RSWASGLRRSGRVSSAQWRHRCFTRVCREMRPLRPLQSRRWARRGL 132
+SW + + R++S QWR + R+ + ++ L SR GL
Sbjct: 209 QSWILSVNPNRRLTSQQWRLKVLVRLSKFLQALADGSSRLRESEGL 254
>gi|239787838 testis expressed 10 isoform 1 [Homo sapiens]
Length = 929
Score = 26.2 bits (56), Expect = 9.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 87 RSWASGLRRSGRVSSAQWRHRCFTRVCREMRPLRPLQSRRWARRGL 132
+SW + + R++S QWR + R+ + ++ L SR GL
Sbjct: 206 QSWILSVNPNRRLTSQQWRLKVLVRLSKFLQALADGSSRLRESEGL 251
>gi|239747214 PREDICTED: hypothetical protein XP_002346940 [Homo
sapiens]
Length = 247
Score = 26.2 bits (56), Expect = 9.1
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 15/73 (20%)
Query: 49 RFSGALARREHTPSPHGAPDCLKVALARATSGT-------EAVAG------RSWASGLRR 95
R GALA + P+P C + A A A SG +AG R WA G R
Sbjct: 159 RRGGALAVQ--LPAPGPVLSCSRFAPAAARSGPGRLLRFLRGLAGGRRLRPRRWALGGRG 216
Query: 96 SGRVSSAQWRHRC 108
V SA H+C
Sbjct: 217 CSGVGSALAEHQC 229
>gi|239741020 PREDICTED: hypothetical protein XP_002342065 [Homo
sapiens]
Length = 247
Score = 26.2 bits (56), Expect = 9.1
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 15/73 (20%)
Query: 49 RFSGALARREHTPSPHGAPDCLKVALARATSGT-------EAVAG------RSWASGLRR 95
R GALA + P+P C + A A A SG +AG R WA G R
Sbjct: 159 RRGGALAVQ--LPAPGPVLSCSRFAPAAARSGPGRLLRFLRGLAGGRRLRPRRWALGGRG 216
Query: 96 SGRVSSAQWRHRC 108
V SA H+C
Sbjct: 217 CSGVGSALAEHQC 229
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.135 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,796,713
Number of Sequences: 37866
Number of extensions: 228391
Number of successful extensions: 857
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 25
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.