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Search of human proteins with 239756484
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756484 PREDICTED: hypothetical protein XP_002344998 [Homo
sapiens]
(157 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756484 PREDICTED: hypothetical protein XP_002344998 [Homo ... 340 3e-94
gi|239751008 PREDICTED: hypothetical protein XP_002347629 [Homo ... 340 3e-94
gi|239745410 PREDICTED: hypothetical protein XP_002343458 [Homo ... 340 3e-94
gi|119703746 electron-transferring-flavoprotein dehydrogenase pr... 31 0.49
gi|4758072 cryptochrome 1 (photolyase-like) [Homo sapiens] 30 0.84
gi|18643383 inositol 1,4,5-trisphosphate 3-kinase C [Homo sapiens] 30 1.1
gi|24308251 bile acid beta-glucosidase [Homo sapiens] 29 1.9
gi|217416372 coiled-coil domain containing 142 [Homo sapiens] 27 5.5
gi|187607300 versican isoform 2 [Homo sapiens] 27 7.1
gi|21361116 versican isoform 1 [Homo sapiens] 27 7.1
gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens] 27 9.3
gi|239757920 PREDICTED: hypothetical protein [Homo sapiens] 27 9.3
gi|239752430 PREDICTED: hypothetical protein XP_002348270 [Homo ... 27 9.3
gi|239746947 PREDICTED: hypothetical protein XP_002343892 [Homo ... 27 9.3
gi|156105707 SNF related kinase [Homo sapiens] 27 9.3
gi|156105705 SNF related kinase [Homo sapiens] 27 9.3
>gi|239756484 PREDICTED: hypothetical protein XP_002344998 [Homo
sapiens]
Length = 157
Score = 340 bits (872), Expect = 3e-94
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MMNELWRRAGGWLTWHLVHRCKHGALHCGVAAAPAPLVVEAERQVLSGGGGAESKPQDFS 60
MMNELWRRAGGWLTWHLVHRCKHGALHCGVAAAPAPLVVEAERQVLSGGGGAESKPQDFS
Sbjct: 1 MMNELWRRAGGWLTWHLVHRCKHGALHCGVAAAPAPLVVEAERQVLSGGGGAESKPQDFS 60
Query: 61 GGLDWEVQEGYAILCIFMRLAWMRPLARRCLAMMQRMWSEKMKVAWRMGKGLEWGLDAGL 120
GGLDWEVQEGYAILCIFMRLAWMRPLARRCLAMMQRMWSEKMKVAWRMGKGLEWGLDAGL
Sbjct: 61 GGLDWEVQEGYAILCIFMRLAWMRPLARRCLAMMQRMWSEKMKVAWRMGKGLEWGLDAGL 120
Query: 121 WMVMFRARLSSSTPVTCMSCTVRSKGKGIRWVWEEGG 157
WMVMFRARLSSSTPVTCMSCTVRSKGKGIRWVWEEGG
Sbjct: 121 WMVMFRARLSSSTPVTCMSCTVRSKGKGIRWVWEEGG 157
>gi|239751008 PREDICTED: hypothetical protein XP_002347629 [Homo
sapiens]
Length = 157
Score = 340 bits (872), Expect = 3e-94
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MMNELWRRAGGWLTWHLVHRCKHGALHCGVAAAPAPLVVEAERQVLSGGGGAESKPQDFS 60
MMNELWRRAGGWLTWHLVHRCKHGALHCGVAAAPAPLVVEAERQVLSGGGGAESKPQDFS
Sbjct: 1 MMNELWRRAGGWLTWHLVHRCKHGALHCGVAAAPAPLVVEAERQVLSGGGGAESKPQDFS 60
Query: 61 GGLDWEVQEGYAILCIFMRLAWMRPLARRCLAMMQRMWSEKMKVAWRMGKGLEWGLDAGL 120
GGLDWEVQEGYAILCIFMRLAWMRPLARRCLAMMQRMWSEKMKVAWRMGKGLEWGLDAGL
Sbjct: 61 GGLDWEVQEGYAILCIFMRLAWMRPLARRCLAMMQRMWSEKMKVAWRMGKGLEWGLDAGL 120
Query: 121 WMVMFRARLSSSTPVTCMSCTVRSKGKGIRWVWEEGG 157
WMVMFRARLSSSTPVTCMSCTVRSKGKGIRWVWEEGG
Sbjct: 121 WMVMFRARLSSSTPVTCMSCTVRSKGKGIRWVWEEGG 157
>gi|239745410 PREDICTED: hypothetical protein XP_002343458 [Homo
sapiens]
Length = 157
Score = 340 bits (872), Expect = 3e-94
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MMNELWRRAGGWLTWHLVHRCKHGALHCGVAAAPAPLVVEAERQVLSGGGGAESKPQDFS 60
MMNELWRRAGGWLTWHLVHRCKHGALHCGVAAAPAPLVVEAERQVLSGGGGAESKPQDFS
Sbjct: 1 MMNELWRRAGGWLTWHLVHRCKHGALHCGVAAAPAPLVVEAERQVLSGGGGAESKPQDFS 60
Query: 61 GGLDWEVQEGYAILCIFMRLAWMRPLARRCLAMMQRMWSEKMKVAWRMGKGLEWGLDAGL 120
GGLDWEVQEGYAILCIFMRLAWMRPLARRCLAMMQRMWSEKMKVAWRMGKGLEWGLDAGL
Sbjct: 61 GGLDWEVQEGYAILCIFMRLAWMRPLARRCLAMMQRMWSEKMKVAWRMGKGLEWGLDAGL 120
Query: 121 WMVMFRARLSSSTPVTCMSCTVRSKGKGIRWVWEEGG 157
WMVMFRARLSSSTPVTCMSCTVRSKGKGIRWVWEEGG
Sbjct: 121 WMVMFRARLSSSTPVTCMSCTVRSKGKGIRWVWEEGG 157
>gi|119703746 electron-transferring-flavoprotein dehydrogenase
precursor [Homo sapiens]
Length = 617
Score = 30.8 bits (68), Expect = 0.49
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 125 FRARLSSSTPVTCMSCTVRSKGKGIRWVWEEGG 157
FR ++++ V C +C ++ + I WV EGG
Sbjct: 577 FRLQINAQNCVHCKTCDIKDPSQNINWVVPEGG 609
>gi|4758072 cryptochrome 1 (photolyase-like) [Homo sapiens]
Length = 586
Score = 30.0 bits (66), Expect = 0.84
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 72 AILCIFMRLAWMRPLARRCLAMMQRM------WSEKMKVAWRMGKGLEWGLDAGLWM 122
AI+ + W+ LAR +A W E MKV + +W ++AG WM
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWM 398
>gi|18643383 inositol 1,4,5-trisphosphate 3-kinase C [Homo sapiens]
Length = 683
Score = 29.6 bits (65), Expect = 1.1
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 40 EAERQVLSGGGGAESKPQDFSGGLDWE 66
E+E V++GGGGA S P+D SG W+
Sbjct: 365 ESEDDVVAGGGGA-SDPEDRSGSKPWK 390
>gi|24308251 bile acid beta-glucosidase [Homo sapiens]
Length = 927
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 62 GLDWEVQEGYAILCIFMRLAWMRPLARRCLAMMQRMWSEKMKVAW---RMGKGLEWG 115
GL ++ E Y +F LA+MRPL+ + + + K K +W + G GL G
Sbjct: 857 GLAFQTPEAYCQQRVFRSLAYMRPLSIWAMQLALQQQQHK-KASWPKVKQGTGLRTG 912
>gi|217416372 coiled-coil domain containing 142 [Homo sapiens]
Length = 743
Score = 27.3 bits (59), Expect = 5.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 36 PLVVEAERQVLSGGGGAESKPQDFSGGLDWEV 67
PLV+ + GG G E + +GGL WEV
Sbjct: 12 PLVIVPPLRAQPGGTGEEQWERSRTGGLRWEV 43
>gi|187607300 versican isoform 2 [Homo sapiens]
Length = 655
Score = 26.9 bits (58), Expect = 7.1
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 5 LWRRAGGW----LTWHLVHRCKHGALHCG 29
+W G W +HL + CK G + CG
Sbjct: 528 IWHENGQWNDVPCNYHLTYTCKKGTVACG 556
>gi|21361116 versican isoform 1 [Homo sapiens]
Length = 3396
Score = 26.9 bits (58), Expect = 7.1
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 5 LWRRAGGW----LTWHLVHRCKHGALHCG 29
+W G W +HL + CK G + CG
Sbjct: 3269 IWHENGQWNDVPCNYHLTYTCKKGTVACG 3297
>gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]
Length = 4753
Score = 26.6 bits (57), Expect = 9.3
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 75 CIFMRLAWMRPL-ARRCLAMMQRMWSEKMKVAWR 107
C+ +L P +RRC A+ +W+ ++ + WR
Sbjct: 4505 CLLQQLKGAPPCPSRRCAAVAHALWTGRLPLPWR 4538
>gi|239757920 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 26.6 bits (57), Expect = 9.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 31 AAAPAPLVVEAERQVLSGGGGAESKPQD 58
A+AP L ++ E +VL GG +K QD
Sbjct: 103 ASAPWKLALQKEARVLKRGGSVRTKSQD 130
>gi|239752430 PREDICTED: hypothetical protein XP_002348270 [Homo
sapiens]
Length = 146
Score = 26.6 bits (57), Expect = 9.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 31 AAAPAPLVVEAERQVLSGGGGAESKPQD 58
A+AP L ++ E +VL GG +K QD
Sbjct: 103 ASAPWKLALQKEARVLKRGGSVRTKSQD 130
>gi|239746947 PREDICTED: hypothetical protein XP_002343892 [Homo
sapiens]
Length = 146
Score = 26.6 bits (57), Expect = 9.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 31 AAAPAPLVVEAERQVLSGGGGAESKPQD 58
A+AP L ++ E +VL GG +K QD
Sbjct: 103 ASAPWKLALQKEARVLKRGGSVRTKSQD 130
>gi|156105707 SNF related kinase [Homo sapiens]
Length = 765
Score = 26.6 bits (57), Expect = 9.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 48 GGGGAESKPQDFSGGLD 64
G GG +SKP + SGG+D
Sbjct: 578 GDGGGQSKPSNASGGVD 594
>gi|156105705 SNF related kinase [Homo sapiens]
Length = 765
Score = 26.6 bits (57), Expect = 9.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 48 GGGGAESKPQDFSGGLD 64
G GG +SKP + SGG+D
Sbjct: 578 GDGGGQSKPSNASGGVD 594
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.136 0.485
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,973,755
Number of Sequences: 37866
Number of extensions: 295024
Number of successful extensions: 808
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 796
Number of HSP's gapped (non-prelim): 16
length of query: 157
length of database: 18,247,518
effective HSP length: 94
effective length of query: 63
effective length of database: 14,688,114
effective search space: 925351182
effective search space used: 925351182
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.