Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239756405

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756405 PREDICTED: hypothetical protein [Homo sapiens]
         (144 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756405 PREDICTED: hypothetical protein [Homo sapiens]           297   2e-81
gi|239750935 PREDICTED: hypothetical protein XP_002347608 [Homo ...   297   2e-81
gi|239745329 PREDICTED: hypothetical protein XP_002343427 [Homo ...   297   2e-81
gi|169168272 PREDICTED: hypothetical protein [Homo sapiens]           168   2e-42
gi|169167956 PREDICTED: hypothetical protein [Homo sapiens]           168   2e-42
gi|169167416 PREDICTED: hypothetical protein [Homo sapiens]           168   2e-42
gi|239757181 PREDICTED: hypothetical protein XP_002345195 [Homo ...   142   1e-34
gi|239751691 PREDICTED: hypothetical protein [Homo sapiens]           142   1e-34
gi|239746195 PREDICTED: hypothetical protein XP_002343673 [Homo ...   142   1e-34
gi|157266266 WD repeat domain 86 [Homo sapiens]                        30   0.91 
gi|239756910 PREDICTED: hypothetical protein [Homo sapiens]            27   5.9  
gi|239751413 PREDICTED: hypothetical protein XP_002347827 [Homo ...    27   5.9  
gi|239745923 PREDICTED: hypothetical protein XP_002343577 [Homo ...    27   5.9  
gi|20357515 macrophage scavenger receptor 1 isoform type 3 [Homo...    27   7.7  
gi|148228925 X antigen family, member 1C isoform 1 [Homo sapiens]      27   7.7  
gi|19747281 X antigen family, member 1D isoform 1c [Homo sapiens]      27   7.7  
gi|9966899 X antigen family, member 1D isoform 1a [Homo sapiens]       27   7.7  
gi|147906278 X antigen family, member 1C isoform 2 [Homo sapiens]      27   7.7  
gi|148225604 X antigen family, member 1B isoform 1 [Homo sapiens]      27   7.7  
gi|148232092 X antigen family, member 1B isoform 2 [Homo sapiens]      27   7.7  
gi|147900714 X antigen family, member 1 isoform 2 [Homo sapiens]       27   7.7  
gi|148231153 X antigen family, member 1 isoform 1 [Homo sapiens]       27   7.7  
gi|208431810 hypothetical protein LOC51307 [Homo sapiens]              27   7.7  
gi|7706139 hypothetical protein LOC51307 [Homo sapiens]                27   7.7  
gi|147903922 X antigen family member 1E isoform 2 [Homo sapiens]       27   7.7  
gi|148229505 X antigen family member 1E isoform 1 [Homo sapiens]       27   7.7  

>gi|239756405 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 144

 Score =  297 bits (761), Expect = 2e-81
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC 60
           MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC
Sbjct: 1   MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC 60

Query: 61  RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA 120
           RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA
Sbjct: 61  RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA 120

Query: 121 SSQMFSIPMMLLGCMHWLPKRDVG 144
           SSQMFSIPMMLLGCMHWLPKRDVG
Sbjct: 121 SSQMFSIPMMLLGCMHWLPKRDVG 144


>gi|239750935 PREDICTED: hypothetical protein XP_002347608 [Homo
           sapiens]
          Length = 144

 Score =  297 bits (761), Expect = 2e-81
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC 60
           MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC
Sbjct: 1   MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC 60

Query: 61  RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA 120
           RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA
Sbjct: 61  RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA 120

Query: 121 SSQMFSIPMMLLGCMHWLPKRDVG 144
           SSQMFSIPMMLLGCMHWLPKRDVG
Sbjct: 121 SSQMFSIPMMLLGCMHWLPKRDVG 144


>gi|239745329 PREDICTED: hypothetical protein XP_002343427 [Homo
           sapiens]
          Length = 144

 Score =  297 bits (761), Expect = 2e-81
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC 60
           MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC
Sbjct: 1   MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC 60

Query: 61  RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA 120
           RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA
Sbjct: 61  RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA 120

Query: 121 SSQMFSIPMMLLGCMHWLPKRDVG 144
           SSQMFSIPMMLLGCMHWLPKRDVG
Sbjct: 121 SSQMFSIPMMLLGCMHWLPKRDVG 144


>gi|169168272 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 98

 Score =  168 bits (425), Expect = 2e-42
 Identities = 82/98 (83%), Positives = 89/98 (90%)

Query: 42  IRMWSIKATTRSADMGEACRPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101
           +RMWS+KATTRSADMGEACRPAAA +GAT  G+EH AA +TNSSLQVRRSR TWSVICRS
Sbjct: 1   MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60

Query: 102 GKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHWLP 139
           GKKGM RAHSTALKS  AASSQMFS+P+MLLGCMHWLP
Sbjct: 61  GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98


>gi|169167956 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 98

 Score =  168 bits (425), Expect = 2e-42
 Identities = 82/98 (83%), Positives = 89/98 (90%)

Query: 42  IRMWSIKATTRSADMGEACRPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101
           +RMWS+KATTRSADMGEACRPAAA +GAT  G+EH AA +TNSSLQVRRSR TWSVICRS
Sbjct: 1   MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60

Query: 102 GKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHWLP 139
           GKKGM RAHSTALKS  AASSQMFS+P+MLLGCMHWLP
Sbjct: 61  GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98


>gi|169167416 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 98

 Score =  168 bits (425), Expect = 2e-42
 Identities = 82/98 (83%), Positives = 89/98 (90%)

Query: 42  IRMWSIKATTRSADMGEACRPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101
           +RMWS+KATTRSADMGEACRPAAA +GAT  G+EH AA +TNSSLQVRRSR TWSVICRS
Sbjct: 1   MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60

Query: 102 GKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHWLP 139
           GKKGM RAHSTALKS  AASSQMFS+P+MLLGCMHWLP
Sbjct: 61  GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98


>gi|239757181 PREDICTED: hypothetical protein XP_002345195 [Homo
           sapiens]
          Length = 129

 Score =  142 bits (358), Expect = 1e-34
 Identities = 78/124 (62%), Positives = 84/124 (67%)

Query: 18  MALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRGMEHC 77
           MALRQ YSAESTC   S STCSWK R WS+KAT RSA +G A RPAAA SGA  RG   C
Sbjct: 1   MALRQPYSAESTCRRPSLSTCSWKARTWSMKATARSAAIGAAWRPAAASSGAVCRGSAAC 60

Query: 78  AAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHW 137
           AAF+T SSLQ+RRS ATWS    SGKKG +RAHST LKS  AASS   S+P         
Sbjct: 61  AAFSTKSSLQLRRSSATWSATGSSGKKGAWRAHSTVLKSSRAASSHTLSMPSTAPAAPPP 120

Query: 138 LPKR 141
            PKR
Sbjct: 121 APKR 124


>gi|239751691 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 129

 Score =  142 bits (358), Expect = 1e-34
 Identities = 78/124 (62%), Positives = 84/124 (67%)

Query: 18  MALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRGMEHC 77
           MALRQ YSAESTC   S STCSWK R WS+KAT RSA +G A RPAAA SGA  RG   C
Sbjct: 1   MALRQPYSAESTCRRPSLSTCSWKARTWSMKATARSAAIGAAWRPAAASSGAVCRGSAAC 60

Query: 78  AAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHW 137
           AAF+T SSLQ+RRS ATWS    SGKKG +RAHST LKS  AASS   S+P         
Sbjct: 61  AAFSTKSSLQLRRSSATWSATGSSGKKGAWRAHSTVLKSSRAASSHTLSMPSTAPAAPPP 120

Query: 138 LPKR 141
            PKR
Sbjct: 121 APKR 124


>gi|239746195 PREDICTED: hypothetical protein XP_002343673 [Homo
           sapiens]
          Length = 129

 Score =  142 bits (358), Expect = 1e-34
 Identities = 78/124 (62%), Positives = 84/124 (67%)

Query: 18  MALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRGMEHC 77
           MALRQ YSAESTC   S STCSWK R WS+KAT RSA +G A RPAAA SGA  RG   C
Sbjct: 1   MALRQPYSAESTCRRPSLSTCSWKARTWSMKATARSAAIGAAWRPAAASSGAVCRGSAAC 60

Query: 78  AAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHW 137
           AAF+T SSLQ+RRS ATWS    SGKKG +RAHST LKS  AASS   S+P         
Sbjct: 61  AAFSTKSSLQLRRSSATWSATGSSGKKGAWRAHSTVLKSSRAASSHTLSMPSTAPAAPPP 120

Query: 138 LPKR 141
            PKR
Sbjct: 121 APKR 124


>gi|157266266 WD repeat domain 86 [Homo sapiens]
          Length = 376

 Score = 29.6 bits (65), Expect = 0.91
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 13/85 (15%)

Query: 43  RMWSIKATTRSADMGEACRPAAAR-SGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101
           R+WS      +AD G+ C       S  T+  +E  AAF  ++   +RR    W V+   
Sbjct: 40  RLWS------TAD-GQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRR----WDVLTGQ 88

Query: 102 GKKGMFRAHSTALKSILAASSQMFS 126
             + ++R H++ +  IL A++Q+FS
Sbjct: 89  CLQ-VYRGHTSIVNRILVANNQLFS 112


>gi|239756910 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 14  VNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRG 73
           ++  M  R +Y A+    + SF   S  +    +K   R  D+G    P A R   T RG
Sbjct: 96  ISSPMGCRGIYDAQQVALSRSFLPVS--VAQKQVKGRGRWGDVGATQSPVAVRELGTLRG 153


>gi|239751413 PREDICTED: hypothetical protein XP_002347827 [Homo
           sapiens]
          Length = 155

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 14  VNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRG 73
           ++  M  R +Y A+    + SF   S  +    +K   R  D+G    P A R   T RG
Sbjct: 96  ISSPMGCRGIYDAQQVALSRSFLPVS--VAQKQVKGRGRWGDVGATQSPVAVRELGTLRG 153


>gi|239745923 PREDICTED: hypothetical protein XP_002343577 [Homo
           sapiens]
          Length = 155

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 14  VNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRG 73
           ++  M  R +Y A+    + SF   S  +    +K   R  D+G    P A R   T RG
Sbjct: 96  ISSPMGCRGIYDAQQVALSRSFLPVS--VAQKQVKGRGRWGDVGATQSPVAVRELGTLRG 153


>gi|20357515 macrophage scavenger receptor 1 isoform type 3 [Homo
           sapiens]
          Length = 388

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 12  KKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC 60
           K    T++   ++  E  C     S    KIR W  +A + S D G  C
Sbjct: 338 KGSGNTLSTGPIWLNEVFCFGRESSIEECKIRQWGTRACSHSEDAGVTC 386


>gi|148228925 X antigen family, member 1C isoform 1 [Homo sapiens]
          Length = 160

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 73  GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
           G+ H  +      +Q+R   ATW VIC+S
Sbjct: 93  GILHLGSRQKKIRIQLRSQCATWKVICKS 121


>gi|19747281 X antigen family, member 1D isoform 1c [Homo sapiens]
          Length = 160

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 73  GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
           G+ H  +      +Q+R   ATW VIC+S
Sbjct: 93  GILHLGSRQKKIRIQLRSQCATWKVICKS 121


>gi|9966899 X antigen family, member 1D isoform 1a [Homo sapiens]
          Length = 146

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 73  GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
           G+ H  +      +Q+R   ATW VIC+S
Sbjct: 79  GILHLGSRQKKIRIQLRSQCATWKVICKS 107


>gi|147906278 X antigen family, member 1C isoform 2 [Homo sapiens]
          Length = 146

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 73  GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
           G+ H  +      +Q+R   ATW VIC+S
Sbjct: 79  GILHLGSRQKKIRIQLRSQCATWKVICKS 107


>gi|148225604 X antigen family, member 1B isoform 1 [Homo sapiens]
          Length = 160

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 73  GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
           G+ H  +      +Q+R   ATW VIC+S
Sbjct: 93  GILHLGSRQKKIRIQLRSQCATWKVICKS 121


>gi|148232092 X antigen family, member 1B isoform 2 [Homo sapiens]
          Length = 146

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 73  GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
           G+ H  +      +Q+R   ATW VIC+S
Sbjct: 79  GILHLGSRQKKIRIQLRSQCATWKVICKS 107


>gi|147900714 X antigen family, member 1 isoform 2 [Homo sapiens]
          Length = 146

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 73  GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
           G+ H  +      +Q+R   ATW VIC+S
Sbjct: 79  GILHLGSRQKKIRIQLRSQCATWKVICKS 107


>gi|148231153 X antigen family, member 1 isoform 1 [Homo sapiens]
          Length = 160

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 73  GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
           G+ H  +      +Q+R   ATW VIC+S
Sbjct: 93  GILHLGSRQKKIRIQLRSQCATWKVICKS 121


>gi|208431810 hypothetical protein LOC51307 [Homo sapiens]
          Length = 392

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 68  GATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKG 105
           GA+WRG+ HC+      SL      +  S+  R   +G
Sbjct: 47  GASWRGLPHCSCAEFQDSLNFSYHPSGLSLHLRPPSRG 84


>gi|7706139 hypothetical protein LOC51307 [Homo sapiens]
          Length = 392

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 68  GATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKG 105
           GA+WRG+ HC+      SL      +  S+  R   +G
Sbjct: 47  GASWRGLPHCSCAEFQDSLNFSYHPSGLSLHLRPPSRG 84


>gi|147903922 X antigen family member 1E isoform 2 [Homo sapiens]
          Length = 146

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 73  GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
           G+ H  +      +Q+R   ATW VIC+S
Sbjct: 79  GILHLGSRQKKIRIQLRSQCATWKVICKS 107


>gi|148229505 X antigen family member 1E isoform 1 [Homo sapiens]
          Length = 160

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 73  GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
           G+ H  +      +Q+R   ATW VIC+S
Sbjct: 93  GILHLGSRQKKIRIQLRSQCATWKVICKS 121


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.126    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,918,890
Number of Sequences: 37866
Number of extensions: 168287
Number of successful extensions: 511
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 26
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press