Guide to the Human Genome
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Name: XAGE1D Sequence: fasta or formatted (146aa) NCBI GI: 9966899
Description:

X antigen family, member 1D isoform 1a

Referenced in:

Melanoma Antigen Family

Other entries for this name:
alt prot [69aa] X antigen family, member 1D isoform 1d
alt prot [160aa] X antigen family, member 1D isoform 1c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          6           1
 C cysteine            5.5          8           1
 D aspartate           0.7          1           1
 E glutamate           5.5          8           2
 F phenylalanine       0.7          1           1
 G glycine             6.8         10           2
 H histidine           3.4          5           1
 I isoleucine          6.2          9           2
 K lysine              8.2         12           3
 L leucine             8.2         12           2
 M methionine          2.1          3           1
 N asparagine          2.1          3           1
 P proline            10.3         15           2
 Q glutamine           7.5         11           2
 R arginine            5.5          8           2
 S serine              8.9         13           1
 T threonine           4.8          7           1
 V valine              6.8         10           1
 W tryptophan          2.7          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   X antigen family, member 1D isoform 1a 
XAGE1C                1.000   X antigen family, member 1C isoform 2 
XAGE1B                1.000   X antigen family, member 1B isoform 2 
XAGE1A                1.000   X antigen family, member 1 isoform 2 
XAGE1E                1.000   X antigen family member 1E isoform 2 
XAGE1C                0.622   X antigen family, member 1C isoform 1 
XAGE1D                0.622   X antigen family, member 1D isoform 1c 
XAGE1B                0.622   X antigen family, member 1B isoform 1 
XAGE1A                0.622   X antigen family, member 1 isoform 1 
XAGE1E                0.622   X antigen family member 1E isoform 1 
XAGE1C                0.140   X antigen family, member 1C isoform 3 
XAGE1B                0.140   X antigen family, member 1B isoform 3 
XAGE1A                0.140   X antigen family, member 1 isoform 3 
XAGE1D                0.140   X antigen family, member 1D isoform 1d 
XAGE1E                0.140   X antigen family member 1E isoform 3 
XAGE2B                0.049   X antigen family, member 2-like 
XAGE2                 0.049   XAGE-2 protein 
XAGE3                 0.038   XAGE-3 protein 
XAGE3                 0.038   XAGE-3 protein 
XAGE5                 0.028   X antigen family, member 5 
PAGE3                 0.021   P antigen family, member 3 (prostate associated) [Ho...
CBLL1                 0.017   Cas-Br-M (murine) ecotropic retroviral transforming...
PAGE4                 0.010   G antigen, family C, 1 
AUTS2                 0.010   autism susceptibility candidate 2 isoform 2 
AUTS2                 0.010   autism susceptibility candidate 2 isoform 1 
MUC5AC                0.010   mucin 5AC 
LOC100130458          0.010   PREDICTED: hypothetical protein 
LOC100130458          0.010   PREDICTED: hypothetical protein 
LOC100130458          0.010   PREDICTED: hypothetical protein 
MUC5B                 0.010   mucin 5, subtype B, tracheobronchial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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