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Search of human proteins with 239756280
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756280 PREDICTED: hypothetical protein XP_002344872 [Homo
sapiens]
(283 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756280 PREDICTED: hypothetical protein XP_002344872 [Homo ... 576 e-165
gi|239750807 PREDICTED: hypothetical protein XP_002347566 [Homo ... 574 e-164
gi|239745167 PREDICTED: hypothetical protein XP_002343386 [Homo ... 574 e-164
gi|239754856 PREDICTED: p150-like [Homo sapiens] 253 1e-67
gi|239749395 PREDICTED: p150-like [Homo sapiens] 253 1e-67
gi|239743530 PREDICTED: p150-like [Homo sapiens] 252 3e-67
gi|239754371 PREDICTED: hypothetical protein [Homo sapiens] 143 2e-34
gi|239748922 PREDICTED: hypothetical protein [Homo sapiens] 143 2e-34
gi|239742944 PREDICTED: hypothetical protein [Homo sapiens] 143 2e-34
gi|239754376 PREDICTED: similar to putative p150 [Homo sapiens] 142 3e-34
gi|239748989 PREDICTED: hypothetical protein XP_002346845 [Homo ... 142 3e-34
gi|239743009 PREDICTED: hypothetical protein XP_002342695 [Homo ... 142 3e-34
gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo ... 30 1.8
gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo ... 30 1.8
gi|33598968 LIM domain only 7 isoform 1 [Homo sapiens] 30 2.4
gi|157266300 membrane alanine aminopeptidase precursor [Homo sap... 30 2.4
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 28 9.1
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 28 9.1
gi|56676335 RAP1 interacting factor 1 [Homo sapiens] 28 9.1
gi|116089292 tetratricopeptide repeat domain 21B [Homo sapiens] 28 9.1
>gi|239756280 PREDICTED: hypothetical protein XP_002344872 [Homo
sapiens]
Length = 283
Score = 576 bits (1485), Expect = e-165
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 1 MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN 60
MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN
Sbjct: 1 MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN 60
Query: 61 LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV 120
LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV
Sbjct: 61 LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV 120
Query: 121 KDLFKEDYKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF 180
KDLFKEDYKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF
Sbjct: 121 KDLFKEDYKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF 180
Query: 181 TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID 240
TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID
Sbjct: 181 TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID 240
Query: 241 QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG 283
QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG
Sbjct: 241 QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG 283
>gi|239750807 PREDICTED: hypothetical protein XP_002347566 [Homo
sapiens]
Length = 283
Score = 574 bits (1480), Expect = e-164
Identities = 282/283 (99%), Positives = 283/283 (100%)
Query: 1 MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN 60
MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN
Sbjct: 1 MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN 60
Query: 61 LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV 120
LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV
Sbjct: 61 LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV 120
Query: 121 KDLFKEDYKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF 180
KDLFKE+YKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF
Sbjct: 121 KDLFKENYKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF 180
Query: 181 TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID 240
TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID
Sbjct: 181 TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID 240
Query: 241 QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG 283
QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG
Sbjct: 241 QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG 283
>gi|239745167 PREDICTED: hypothetical protein XP_002343386 [Homo
sapiens]
Length = 283
Score = 574 bits (1480), Expect = e-164
Identities = 282/283 (99%), Positives = 283/283 (100%)
Query: 1 MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN 60
MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN
Sbjct: 1 MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN 60
Query: 61 LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV 120
LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV
Sbjct: 61 LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV 120
Query: 121 KDLFKEDYKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF 180
KDLFKE+YKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF
Sbjct: 121 KDLFKENYKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF 180
Query: 181 TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID 240
TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID
Sbjct: 181 TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID 240
Query: 241 QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG 283
QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG
Sbjct: 241 QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG 283
>gi|239754856 PREDICTED: p150-like [Homo sapiens]
Length = 262
Score = 253 bits (647), Expect = 1e-67
Identities = 117/126 (92%), Positives = 121/126 (96%)
Query: 156 VKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITL 215
+KMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRA IAKS LSQKNK GGITL
Sbjct: 1 MKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRAHIAKSILSQKNKAGGITL 60
Query: 216 PDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLF 275
PDFKLYYKATVTKT+WYWYQNRDIDQWNRTEPSEI PHIYNYLIFDKP+KNKQWGKDSLF
Sbjct: 61 PDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEITPHIYNYLIFDKPEKNKQWGKDSLF 120
Query: 276 NKWWWK 281
NKW W+
Sbjct: 121 NKWCWE 126
>gi|239749395 PREDICTED: p150-like [Homo sapiens]
Length = 262
Score = 253 bits (647), Expect = 1e-67
Identities = 117/126 (92%), Positives = 121/126 (96%)
Query: 156 VKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITL 215
+KMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRA IAKS LSQKNK GGITL
Sbjct: 1 MKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRAHIAKSILSQKNKAGGITL 60
Query: 216 PDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLF 275
PDFKLYYKATVTKT+WYWYQNRDIDQWNRTEPSEI PHIYNYLIFDKP+KNKQWGKDSLF
Sbjct: 61 PDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEITPHIYNYLIFDKPEKNKQWGKDSLF 120
Query: 276 NKWWWK 281
NKW W+
Sbjct: 121 NKWCWE 126
>gi|239743530 PREDICTED: p150-like [Homo sapiens]
Length = 262
Score = 252 bits (643), Expect = 3e-67
Identities = 116/126 (92%), Positives = 121/126 (96%)
Query: 156 VKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITL 215
++MAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRA IAKS LSQKNK GGITL
Sbjct: 1 MQMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRAHIAKSILSQKNKAGGITL 60
Query: 216 PDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLF 275
PDFKLYYKATVTKT+WYWYQNRDIDQWNRTEPSEI PHIYNYLIFDKP+KNKQWGKDSLF
Sbjct: 61 PDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEITPHIYNYLIFDKPEKNKQWGKDSLF 120
Query: 276 NKWWWK 281
NKW W+
Sbjct: 121 NKWCWE 126
>gi|239754371 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 143 bits (360), Expect = 2e-34
Identities = 61/81 (75%), Positives = 70/81 (86%)
Query: 201 KSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIF 260
K SL +KN GGI LPDFKL+YKATVTKT+WYWYQNR IDQW+RTE SEI H+YN+LIF
Sbjct: 29 KCSLMEKNTAGGIMLPDFKLHYKATVTKTAWYWYQNRHIDQWSRTETSEIKQHVYNHLIF 88
Query: 261 DKPDKNKQWGKDSLFNKWWWK 281
DKPDKNK+WGKD LF+KW W+
Sbjct: 89 DKPDKNKKWGKDLLFSKWCWE 109
>gi|239748922 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 143 bits (360), Expect = 2e-34
Identities = 61/81 (75%), Positives = 70/81 (86%)
Query: 201 KSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIF 260
K SL +KN GGI LPDFKL+YKATVTKT+WYWYQNR IDQW+RTE SEI H+YN+LIF
Sbjct: 29 KCSLMEKNTAGGIMLPDFKLHYKATVTKTAWYWYQNRHIDQWSRTETSEIKQHVYNHLIF 88
Query: 261 DKPDKNKQWGKDSLFNKWWWK 281
DKPDKNK+WGKD LF+KW W+
Sbjct: 89 DKPDKNKKWGKDLLFSKWCWE 109
>gi|239742944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 143 bits (360), Expect = 2e-34
Identities = 61/81 (75%), Positives = 70/81 (86%)
Query: 201 KSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIF 260
K SL +KN GGI LPDFKL+YKATVTKT+WYWYQNR IDQW+RTE SEI H+YN+LIF
Sbjct: 29 KCSLMEKNTAGGIMLPDFKLHYKATVTKTAWYWYQNRHIDQWSRTETSEIKQHVYNHLIF 88
Query: 261 DKPDKNKQWGKDSLFNKWWWK 281
DKPDKNK+WGKD LF+KW W+
Sbjct: 89 DKPDKNKKWGKDLLFSKWCWE 109
>gi|239754376 PREDICTED: similar to putative p150 [Homo sapiens]
Length = 295
Score = 142 bits (358), Expect = 3e-34
Identities = 61/67 (91%), Positives = 64/67 (95%)
Query: 215 LPDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSL 274
LPDFKLYYKATVTKT+WY YQNRDIDQWNRTEPSEI PHIYNYLIFDKP+KNKQWGKDSL
Sbjct: 2 LPDFKLYYKATVTKTAWYRYQNRDIDQWNRTEPSEITPHIYNYLIFDKPEKNKQWGKDSL 61
Query: 275 FNKWWWK 281
FNKW W+
Sbjct: 62 FNKWCWE 68
>gi|239748989 PREDICTED: hypothetical protein XP_002346845 [Homo
sapiens]
Length = 295
Score = 142 bits (358), Expect = 3e-34
Identities = 61/67 (91%), Positives = 64/67 (95%)
Query: 215 LPDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSL 274
LPDFKLYYKATVTKT+WY YQNRDIDQWNRTEPSEI PHIYNYLIFDKP+KNKQWGKDSL
Sbjct: 2 LPDFKLYYKATVTKTAWYRYQNRDIDQWNRTEPSEITPHIYNYLIFDKPEKNKQWGKDSL 61
Query: 275 FNKWWWK 281
FNKW W+
Sbjct: 62 FNKWCWE 68
>gi|239743009 PREDICTED: hypothetical protein XP_002342695 [Homo
sapiens]
Length = 295
Score = 142 bits (358), Expect = 3e-34
Identities = 61/67 (91%), Positives = 64/67 (95%)
Query: 215 LPDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSL 274
LPDFKLYYKATVTKT+WY YQNRDIDQWNRTEPSEI PHIYNYLIFDKP+KNKQWGKDSL
Sbjct: 2 LPDFKLYYKATVTKTAWYRYQNRDIDQWNRTEPSEITPHIYNYLIFDKPEKNKQWGKDSL 61
Query: 275 FNKWWWK 281
FNKW W+
Sbjct: 62 FNKWCWE 68
>gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo
sapiens]
Length = 1723
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 231 WYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWW 279
W Y+N + W P E P +N + P K++ WG N+ W
Sbjct: 698 WNDYKNNNSSNWGGGRPDEKTPSSWN----ENPSKDQGWGGGRQPNQGW 742
>gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo
sapiens]
Length = 1833
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 231 WYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWW 279
W Y+N + W P E P +N + P K++ WG N+ W
Sbjct: 698 WNDYKNNNSSNWGGGRPDEKTPSSWN----ENPSKDQGWGGGRQPNQGW 742
>gi|33598968 LIM domain only 7 isoform 1 [Homo sapiens]
Length = 1349
Score = 30.0 bits (66), Expect = 2.4
Identities = 33/168 (19%), Positives = 72/168 (42%), Gaps = 8/168 (4%)
Query: 85 LYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDVKDLFKEDYKPLLNEIKEDTKKWKN 144
+YT T S++ ++ SK + + + ++++ L E+ + + +++KE +KW++
Sbjct: 347 VYTEADGTFSRLFQKIYGENGSKSMSDVSAEDVQNLRQLRYEEMQKIKSQLKEQDQKWQD 406
Query: 145 IPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRALIAKSSL 204
W R + K R I+ ++ T K + + + KS++
Sbjct: 407 DLAKWKDRRKSYTSDLQKKKEEREE---IEKQALEKSKRSSKTFKEMLQDRESQNQKSTV 463
Query: 205 SQKNKTGGI--TLPDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEI 250
+ + L + K TV++ S YQ+ +++ T PSEI
Sbjct: 464 PSRRRMYSFDDVLEEGKRPPTMTVSEAS---YQSERVEEKGATYPSEI 508
>gi|157266300 membrane alanine aminopeptidase precursor [Homo
sapiens]
Length = 967
Score = 30.0 bits (66), Expect = 2.4
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 54 PIVSAQNLLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLG 113
P+++ ++N F+ S +K+ V L NN + +P+ A + Y
Sbjct: 654 PVINRAQIIN--DAFNLASAHKVPVT-----LALNNTLFLIEERQYMPWEAALSSLSYFK 706
Query: 114 IQLTRD-----VKDLFKEDYKPLLNEIKEDTKKWKNIP 146
+ R +K+ K+ PL + +T W+ IP
Sbjct: 707 LMFDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIP 744
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 28.1 bits (61), Expect = 9.1
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 22 IKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLNLISNFSRVSGYKINVQKS 81
+K+E I ++L +++ + L + V + I AQ + SR+SG K N S
Sbjct: 1422 VKEETNI--VKLLEKQYQEQLEEEVAKVIVSMSIAFAQQ-----TELSRISGGKENTASS 1474
Query: 82 -QAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDVKDLFKEDYKPLLNEIKEDTK 140
QA Q E +E+ + +G Q V FKE++KPL E+ E K
Sbjct: 1475 KQAHAVC---QQEQHYFNEMKLSQDQ-----IGFQTFETVDVKFKEEFKPLSKELGEHGK 1526
Query: 141 K 141
+
Sbjct: 1527 E 1527
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 28.1 bits (61), Expect = 9.1
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 22 IKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLNLISNFSRVSGYKINVQKS 81
+K+E I ++L +++ + L + V + I AQ + SR+SG K N S
Sbjct: 1422 VKEETNI--VKLLEKQYQEQLEEEVAKVIVSMSIAFAQQ-----TELSRISGGKENTASS 1474
Query: 82 -QAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDVKDLFKEDYKPLLNEIKEDTK 140
QA Q E +E+ + +G Q V FKE++KPL E+ E K
Sbjct: 1475 KQAHAVC---QQEQHYFNEMKLSQDQ-----IGFQTFETVDVKFKEEFKPLSKELGEHGK 1526
Query: 141 K 141
+
Sbjct: 1527 E 1527
>gi|56676335 RAP1 interacting factor 1 [Homo sapiens]
Length = 2472
Score = 28.1 bits (61), Expect = 9.1
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 18/104 (17%)
Query: 138 DTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRA 197
D K KN P +G++ + ++ KVIY F+ + K E TL I N
Sbjct: 788 DWSKKKNEP---LGKLTSL-FKLIVKVIYSFHTLSFK-------EAHSDTLFTIGNSITG 836
Query: 198 LIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDIDQ 241
+I+ + G I+LP AT+T+ +Y+N +D+
Sbjct: 837 IIS-------SVLGHISLPSMIRKIFATLTRPLALFYENSKLDE 873
>gi|116089292 tetratricopeptide repeat domain 21B [Homo sapiens]
Length = 1316
Score = 28.1 bits (61), Expect = 9.1
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 242 WNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFN 276
W EP++ + H F+K K++ WG+++L+N
Sbjct: 1034 WYTGEPNDALRH------FNKARKDRDWGQNALYN 1062
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,466,217
Number of Sequences: 37866
Number of extensions: 377973
Number of successful extensions: 895
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 22
length of query: 283
length of database: 18,247,518
effective HSP length: 101
effective length of query: 182
effective length of database: 14,423,052
effective search space: 2624995464
effective search space used: 2624995464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.