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Search of human proteins with 239756120
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756120 PREDICTED: hypothetical protein [Homo sapiens]
(170 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756120 PREDICTED: hypothetical protein [Homo sapiens] 316 5e-87
gi|239750652 PREDICTED: hypothetical protein XP_002347499 [Homo ... 305 1e-83
gi|239744960 PREDICTED: hypothetical protein XP_002343317 [Homo ... 305 1e-83
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 42 2e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 41 4e-04
gi|7662162 ALEX2 protein [Homo sapiens] 41 4e-04
gi|29540562 ALEX2 protein [Homo sapiens] 41 4e-04
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 40 0.001
gi|33286446 opioid growth factor receptor [Homo sapiens] 39 0.003
gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens] 35 0.024
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 35 0.024
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 35 0.024
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 35 0.024
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 35 0.024
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 35 0.024
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 35 0.024
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 35 0.024
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 35 0.041
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 35 0.041
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 35 0.041
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 35 0.041
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.041
gi|239753555 PREDICTED: hypothetical protein XP_002345695 [Homo ... 34 0.053
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 34 0.053
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 34 0.053
gi|58331144 proline rich region 18 [Homo sapiens] 34 0.053
gi|54633315 deoxynucleotidyltransferase, terminal, interacting p... 34 0.069
gi|239757014 PREDICTED: hypothetical protein [Homo sapiens] 34 0.069
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] 34 0.069
gi|239747122 PREDICTED: hypothetical protein XP_002343916 [Homo ... 34 0.069
>gi|239756120 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 316 bits (810), Expect = 5e-87
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MEPRSAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAA 60
MEPRSAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAA
Sbjct: 1 MEPRSAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAA 60
Query: 61 RLLRLTPRSSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXX 120
RLLRLTPRSSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGA
Sbjct: 61 RLLRLTPRSSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXX 120
Query: 121 PRRARARGPQPSPPGSSAAKARGRSWKRAAAVPKPTFSWLEFDGINFLSE 170
PRRARARGPQPSPPGSSAAKARGRSWKRAAAVPKPTFSWLEFDGINFLSE
Sbjct: 121 PRRARARGPQPSPPGSSAAKARGRSWKRAAAVPKPTFSWLEFDGINFLSE 170
>gi|239750652 PREDICTED: hypothetical protein XP_002347499 [Homo
sapiens]
Length = 166
Score = 305 bits (781), Expect = 1e-83
Identities = 157/170 (92%), Positives = 157/170 (92%), Gaps = 4/170 (2%)
Query: 1 MEPRSAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAA 60
MEPRSAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAA
Sbjct: 1 MEPRSAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAA 60
Query: 61 RLLRLTPRSSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXX 120
RLLRLTPRSSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGA
Sbjct: 61 RLLRLTPRSSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGA----GAREAG 116
Query: 121 PRRARARGPQPSPPGSSAAKARGRSWKRAAAVPKPTFSWLEFDGINFLSE 170
R RARGPQPSPPGSSAAKARGRSWKRAAAVPKPTFSWLEFDGINFLSE
Sbjct: 117 AARGRARGPQPSPPGSSAAKARGRSWKRAAAVPKPTFSWLEFDGINFLSE 166
>gi|239744960 PREDICTED: hypothetical protein XP_002343317 [Homo
sapiens]
Length = 166
Score = 305 bits (781), Expect = 1e-83
Identities = 157/170 (92%), Positives = 157/170 (92%), Gaps = 4/170 (2%)
Query: 1 MEPRSAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAA 60
MEPRSAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAA
Sbjct: 1 MEPRSAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAA 60
Query: 61 RLLRLTPRSSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXX 120
RLLRLTPRSSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGA
Sbjct: 61 RLLRLTPRSSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGA----GAREAG 116
Query: 121 PRRARARGPQPSPPGSSAAKARGRSWKRAAAVPKPTFSWLEFDGINFLSE 170
R RARGPQPSPPGSSAAKARGRSWKRAAAVPKPTFSWLEFDGINFLSE
Sbjct: 117 AARGRARGPQPSPPGSSAAKARGRSWKRAAAVPKPTFSWLEFDGINFLSE 166
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 42.4 bits (98), Expect = 2e-04
Identities = 43/162 (26%), Positives = 63/162 (38%), Gaps = 22/162 (13%)
Query: 11 ADAAASAAIPAESAPPLQSHPENGVS------APGKGTAAKGARGGQSRCCSVVAARLLR 64
A AAS++ + APP + P + PG ++ R +SR S R R
Sbjct: 529 AKEAASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSR 588
Query: 65 LTPR--SSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXXPR 122
T R +RR R E R PA S+++ + RE + G +
Sbjct: 589 STDRRRGGSRRSRSR-EKRRRRRRSASPPPATSSSSSSRRE--RHRGKHRDGGGSKKKKK 645
Query: 123 RARARG-----------PQPSPPGSSAAKARGRSWKRAAAVP 153
R+R+RG P P+PP S + R +R AVP
Sbjct: 646 RSRSRGEKRSGDGSEKAPAPAPPPSGSTSCGDRDSRRRGAVP 687
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 41.2 bits (95), Expect = 4e-04
Identities = 48/177 (27%), Positives = 64/177 (36%), Gaps = 30/177 (16%)
Query: 2 EPRSAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAAR 61
+P S + D AA+AA + P + S+ G+G A G G + R R
Sbjct: 337 KPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRR------RR 390
Query: 62 LLRLTPRSSA----RRGRPESEPAT--------NGTRQQGDLPALSAAAEAPREGGKEEG 109
R RSSA RRGR PA + R D + A E G E G
Sbjct: 391 RRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERG 450
Query: 110 AXXXXXXXXXXPRRARARGPQPS---------PPGSSAAKARG---RSWKRAAAVPK 154
P RAR PS P G S++++ G RSW + + K
Sbjct: 451 HGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSK 507
>gi|7662162 ALEX2 protein [Homo sapiens]
Length = 632
Score = 41.2 bits (95), Expect = 4e-04
Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 16/140 (11%)
Query: 3 PRSAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAARL 62
PR A + A +P E+A P + GV+AP K A G + V A
Sbjct: 167 PREAETSRAAVPPGTVVPTEAAAPTEVTEGPGVAAPTKVAEAPGVASPTEAAEAPVPA-- 224
Query: 63 LRLTPRSSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXXPR 122
TP +A P T+G+ + +P SAA +A G GA P+
Sbjct: 225 ---TPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKA--TPGAHTGA---------IPK 270
Query: 123 RARARGPQPSPPGSSAAKAR 142
A G P G ++R
Sbjct: 271 ATSATGAVPKGGGKGVTRSR 290
>gi|29540562 ALEX2 protein [Homo sapiens]
Length = 632
Score = 41.2 bits (95), Expect = 4e-04
Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 16/140 (11%)
Query: 3 PRSAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAARL 62
PR A + A +P E+A P + GV+AP K A G + V A
Sbjct: 167 PREAETSRAAVPPGTVVPTEAAAPTEVTEGPGVAAPTKVAEAPGVASPTEAAEAPVPA-- 224
Query: 63 LRLTPRSSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXXPR 122
TP +A P T+G+ + +P SAA +A G GA P+
Sbjct: 225 ---TPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKA--TPGAHTGA---------IPK 270
Query: 123 RARARGPQPSPPGSSAAKAR 142
A G P G ++R
Sbjct: 271 ATSATGAVPKGGGKGVTRSR 290
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 39.7 bits (91), Expect = 0.001
Identities = 37/149 (24%), Positives = 53/149 (35%), Gaps = 12/149 (8%)
Query: 5 SAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAARLLR 64
+++ A AD + + P S PP + PE G SAP + A G + + ++L
Sbjct: 2357 ASSQAEADKMSGTSTPGPSLPPPGAAPEAGPSAPSRRPPGADAEGSEREAEPIPKMKVL- 2415
Query: 65 LTPRSSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXXPRRA 124
S R+G A N + D PA A A + A
Sbjct: 2416 ----ESPRKG------AANASGSSPDAPAKDARASLGTLPLGKPRAGAASPLNSPLSSAV 2465
Query: 125 RARGPQPSPPGSSAAKARGRSWKRAAAVP 153
+ G +P PP S K G W A P
Sbjct: 2466 PSLGKEPFPPSSPLQKG-GSFWSSIPASP 2493
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 38.5 bits (88), Expect = 0.003
Identities = 37/133 (27%), Positives = 45/133 (33%), Gaps = 16/133 (12%)
Query: 5 SAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAA--KGARGGQSRCCSVVAARL 62
+ A A A A PA S P H ENGV +G +G G S
Sbjct: 470 AVASGGAQTLALAGSPAPSGHPKAGHSENGVEEDTEGRTGPKEGTPGSPSE--------- 520
Query: 63 LRLTPRSSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXXPR 122
TP S G EPA + + G PA A + P E E P
Sbjct: 521 ---TPGPSP-AGPAGDEPAESPSETPGPRPA-GPAGDEPAESPSETPGPRPAGPAGDEPA 575
Query: 123 RARARGPQPSPPG 135
+ + P PSP G
Sbjct: 576 ESPSETPGPSPAG 588
>gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens]
Length = 340
Score = 35.4 bits (80), Expect = 0.024
Identities = 39/146 (26%), Positives = 53/146 (36%), Gaps = 30/146 (20%)
Query: 3 PRSAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAARL 62
P ++DAA A P + E + PG AA G C+V +A L
Sbjct: 39 PAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAML 98
Query: 63 LRLTPRSSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXXPR 122
R P R E EP PA SA+A P + +EE P
Sbjct: 99 TRAAPGPR----RSEDEP-----------PAASASAAPPPQRDEEE--------PDGVPE 135
Query: 123 RARARGPQPSPPGSSAAKARGRSWKR 148
+ ++ GP SA K +G+ KR
Sbjct: 136 KGKSSGP-------SARKGKGQIEKR 154
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 35.4 bits (80), Expect = 0.024
Identities = 39/137 (28%), Positives = 52/137 (37%), Gaps = 17/137 (12%)
Query: 7 ADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAARLLRLT 66
A AA A A P S +SHP S G GT G RG + R R T
Sbjct: 133 AGGAAPGVARAQRPGGSGG--RSHPGGPGSPRGGGTVGPGDRGP----AAADGGRPQR-T 185
Query: 67 PRSSARRGRPESEPAT--NGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXXPRRA 124
R++ RG + P T + PAL+ ++PR+G + P
Sbjct: 186 VRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQ--------LGACTRPVDV 237
Query: 125 RARGPQPSPPGSSAAKA 141
R G +P PP + A A
Sbjct: 238 RDSGGRPLPPPDTLASA 254
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 35.4 bits (80), Expect = 0.024
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 36 SAPGKGTAAKGARGGQSRCCSVVAARLLRLTPRSSARRGRPESEPATNGTRQQGDLPALS 95
SAP KGT KGA VA S + G+PE E + + + + D +
Sbjct: 227 SAPAKGTPGKGATPAPPGKAGAVA---------SQTKAGKPE-EDSESSSEESSDSEEET 276
Query: 96 AAAEAPREGGKEEGAXXXXXXXXXXPRRARARGPQPSPPGSSA-AKARGRSWKR 148
AA+A + K G + + +G P+PPG + A A+ ++ KR
Sbjct: 277 PAAKALLQ-AKASGKTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKR 329
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 35.4 bits (80), Expect = 0.024
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 36 SAPGKGTAAKGARGGQSRCCSVVAARLLRLTPRSSARRGRPESEPATNGTRQQGDLPALS 95
SAP KGT KGA VA S + G+PE E + + + + D +
Sbjct: 304 SAPAKGTPGKGATPAPPGKAGAVA---------SQTKAGKPE-EDSESSSEESSDSEEET 353
Query: 96 AAAEAPREGGKEEGAXXXXXXXXXXPRRARARGPQPSPPGSSA-AKARGRSWKR 148
AA+A + K G + + +G P+PPG + A A+ ++ KR
Sbjct: 354 PAAKALLQ-AKASGKTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKR 406
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 35.4 bits (80), Expect = 0.024
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 36 SAPGKGTAAKGARGGQSRCCSVVAARLLRLTPRSSARRGRPESEPATNGTRQQGDLPALS 95
SAP KGT KGA VA S + G+PE E + + + + D +
Sbjct: 304 SAPAKGTPGKGATPAPPGKAGAVA---------SQTKAGKPE-EDSESSSEESSDSEEET 353
Query: 96 AAAEAPREGGKEEGAXXXXXXXXXXPRRARARGPQPSPPGSSA-AKARGRSWKR 148
AA+A + K G + + +G P+PPG + A A+ ++ KR
Sbjct: 354 PAAKALLQ-AKASGKTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKR 406
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 35.4 bits (80), Expect = 0.024
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 36 SAPGKGTAAKGARGGQSRCCSVVAARLLRLTPRSSARRGRPESEPATNGTRQQGDLPALS 95
SAP KGT KGA VA S + G+PE E + + + + D +
Sbjct: 227 SAPAKGTPGKGATPAPPGKAGAVA---------SQTKAGKPE-EDSESSSEESSDSEEET 276
Query: 96 AAAEAPREGGKEEGAXXXXXXXXXXPRRARARGPQPSPPGSSA-AKARGRSWKR 148
AA+A + K G + + +G P+PPG + A A+ ++ KR
Sbjct: 277 PAAKALLQ-AKASGKTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKR 329
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 35.4 bits (80), Expect = 0.024
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 36 SAPGKGTAAKGARGGQSRCCSVVAARLLRLTPRSSARRGRPESEPATNGTRQQGDLPALS 95
SAP KGT KGA VA S + G+PE E + + + + D +
Sbjct: 304 SAPAKGTPGKGATPAPPGKAGAVA---------SQTKAGKPE-EDSESSSEESSDSEEET 353
Query: 96 AAAEAPREGGKEEGAXXXXXXXXXXPRRARARGPQPSPPGSSA-AKARGRSWKR 148
AA+A + K G + + +G P+PPG + A A+ ++ KR
Sbjct: 354 PAAKALLQ-AKASGKTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKR 406
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 35.4 bits (80), Expect = 0.024
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 36 SAPGKGTAAKGARGGQSRCCSVVAARLLRLTPRSSARRGRPESEPATNGTRQQGDLPALS 95
SAP KGT KGA VA S + G+PE E + + + + D +
Sbjct: 304 SAPAKGTPGKGATPAPPGKAGAVA---------SQTKAGKPE-EDSESSSEESSDSEEET 353
Query: 96 AAAEAPREGGKEEGAXXXXXXXXXXPRRARARGPQPSPPGSSA-AKARGRSWKR 148
AA+A + K G + + +G P+PPG + A A+ ++ KR
Sbjct: 354 PAAKALLQ-AKASGKTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKR 406
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 34.7 bits (78), Expect = 0.041
Identities = 36/125 (28%), Positives = 44/125 (35%), Gaps = 10/125 (8%)
Query: 13 AAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAARLLRLTPRSSAR 72
A +S+ +P P + G+ + AA+ GG+S AR T R R
Sbjct: 143 AHSSSRVPRPRLPSQRRGASCGLGPGPESRAARQGLGGRS-----ARAR----TRRGPHR 193
Query: 73 RGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXXPRRARARGPQPS 132
RPE P G RQ G LP A G G A AR S
Sbjct: 194 TRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARG-PARHLRGGSVAAAAAARCLGLS 252
Query: 133 PPGSS 137
PPG S
Sbjct: 253 PPGRS 257
Score = 30.0 bits (66), Expect = 1.0
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 37 APGKGTAAKGA----RGGQSRCCSVVAARLLRLTPRSSARRGRPESEPATNGTRQQGDLP 92
A G G+AA+G RGG + AAR L L+P +R P S A R P
Sbjct: 221 AAGTGSAARGPARHLRGGS--VAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARP 278
Query: 93 ALSAAA 98
ALS +A
Sbjct: 279 ALSPSA 284
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 34.7 bits (78), Expect = 0.041
Identities = 36/125 (28%), Positives = 44/125 (35%), Gaps = 10/125 (8%)
Query: 13 AAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAARLLRLTPRSSAR 72
A +S+ +P P + G+ + AA+ GG+S AR T R R
Sbjct: 143 AHSSSRVPRPRLPSQRRGASCGLGPGPESRAARQGLGGRS-----ARAR----TRRGPHR 193
Query: 73 RGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXXPRRARARGPQPS 132
RPE P G RQ G LP A G G A AR S
Sbjct: 194 TRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARG-PARHLRGGSVAAAAAARCLGLS 252
Query: 133 PPGSS 137
PPG S
Sbjct: 253 PPGRS 257
Score = 30.0 bits (66), Expect = 1.0
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 37 APGKGTAAKGA----RGGQSRCCSVVAARLLRLTPRSSARRGRPESEPATNGTRQQGDLP 92
A G G+AA+G RGG + AAR L L+P +R P S A R P
Sbjct: 221 AAGTGSAARGPARHLRGGS--VAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARP 278
Query: 93 ALSAAA 98
ALS +A
Sbjct: 279 ALSPSA 284
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 34.7 bits (78), Expect = 0.041
Identities = 36/125 (28%), Positives = 44/125 (35%), Gaps = 10/125 (8%)
Query: 13 AAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAARLLRLTPRSSAR 72
A +S+ +P P + G+ + AA+ GG+S AR T R R
Sbjct: 143 AHSSSRVPRPRLPSQRRGASCGLGPGPESRAARQGLGGRS-----ARAR----TRRGPHR 193
Query: 73 RGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXXPRRARARGPQPS 132
RPE P G RQ G LP A G G A AR S
Sbjct: 194 TRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARG-PARHLRGGSVAAAAAARCLGLS 252
Query: 133 PPGSS 137
PPG S
Sbjct: 253 PPGRS 257
Score = 30.0 bits (66), Expect = 1.0
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 37 APGKGTAAKGA----RGGQSRCCSVVAARLLRLTPRSSARRGRPESEPATNGTRQQGDLP 92
A G G+AA+G RGG + AAR L L+P +R P S A R P
Sbjct: 221 AAGTGSAARGPARHLRGGS--VAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARP 278
Query: 93 ALSAAA 98
ALS +A
Sbjct: 279 ALSPSA 284
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 34.7 bits (78), Expect = 0.041
Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 8/152 (5%)
Query: 13 AAASAAIPAESAPPLQSHPENGVSAPGKG-TAAKGARGGQSRCCSVVAARLLRLTPRSSA 71
+++S++ + +PPL +H G+ P G ++ G+ Q + + P
Sbjct: 50 SSSSSSSSSSPSPPLGTHNPGGLKPPATGGLSSLGSPPQQLSAATPHGINDILSRPSMPV 109
Query: 72 RRGR--PESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXXPRRARARGP 129
G P + P+ + + A SA+A A A PR + P
Sbjct: 110 ASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPP 169
Query: 130 QPSP-----PGSSAAKARGRSWKRAAAVPKPT 156
P P P ++A A GR K A +P T
Sbjct: 170 PPPPGLYFSPSAAAVAAVGRYPKPLAELPGRT 201
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 34.7 bits (78), Expect = 0.041
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 13/156 (8%)
Query: 2 EPRSA--ADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVA 59
+PR+A A + +D++ PA A P +S +G S+ G+G + +G+ +S
Sbjct: 1607 KPRAAPRAQSGSDSSPEPKAPAPRALPRRSR--SGSSSKGRGPSPEGSSSTESSPEHPPK 1664
Query: 60 ARLLRLTPRSSARRGRPESEPATNGTRQQG-DLPALSAAAEAPREGGKEEGAXXXXXXXX 118
+R R RSS P+++ T R+ P L+ A R + A
Sbjct: 1665 SRTARRGSRSSP---EPKTKSRTPPRRRSSRSSPELTRKARLSR---RSRSASSSPETRS 1718
Query: 119 XXPRRARARGPQPSPPGSSAAKARGRSWKRAAAVPK 154
P R R R P S P A K+R +R+A+ P+
Sbjct: 1719 RTPPRHR-RSPSVSSP-EPAEKSRSSRRRRSASSPR 1752
Score = 32.0 bits (71), Expect = 0.26
Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 3/138 (2%)
Query: 14 AASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAARLLRLTPRSSARR 73
A+S+ + AP SH E S K + A+ +S + R+ R ++A+R
Sbjct: 434 ASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHS-HTPSRRMGRSRSPATAKR 492
Query: 74 GRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXXPRRARARGPQPSP 133
GR S T + P + A R G P +R+R Q
Sbjct: 493 GRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRR- 551
Query: 134 PGSSAAKARGRSWKRAAA 151
G S + RGRS R+ A
Sbjct: 552 -GRSRSARRGRSHSRSPA 568
Score = 30.8 bits (68), Expect = 0.59
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 6/121 (4%)
Query: 36 SAPGKGTAAKGARGGQSRCCSVVAARLLRLTPRSSARRGR---PESEPATNGTRQQGDLP 92
SA T+ +R ++ + A R +S RRG P SEP T T++
Sbjct: 268 SASSSDTSRSRSRSAAAKTHTTALAG--RSPSPASGRRGEGDAPFSEPGTTSTQRPSSPE 325
Query: 93 ALSAAAEAPREGGKEEGAXXXXXXXXXXPRRARARGPQPSPPGSSAAKARGRSWKRAAAV 152
+ +P E ++ P R+ + GP+P P A+ G S + A
Sbjct: 326 TATKQPSSPYEDKDKDKKEKSATRPSPSPERS-STGPEPPAPTPLLAERHGGSPQPLATT 384
Query: 153 P 153
P
Sbjct: 385 P 385
Score = 30.0 bits (66), Expect = 1.0
Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 14/151 (9%)
Query: 2 EPRSAADAAADAAASAAIPAE-----SAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCS 56
EP ++ A +A +A PA+ S+ S + S+ +++ G+ S S
Sbjct: 2508 EPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567
Query: 57 VVAARLLRL--------TPRSSARRGRP-ESEPATNGTRQQGDLPALSAAAEAPREGGKE 107
+ + L P+ + R GRP E PA R + S+++ +
Sbjct: 2568 LPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSS 2627
Query: 108 EGAXXXXXXXXXXPRRARARGPQPSPPGSSA 138
+ + + P P+ PG A
Sbjct: 2628 SSSSSSSSSSSSSSSSSSSSSPSPAKPGPQA 2658
Score = 27.3 bits (59), Expect = 6.5
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 22/84 (26%)
Query: 64 RLTPRSSARRGRPE--SEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXXP 121
RL+PR S PE +P Q G + A APR P
Sbjct: 1590 RLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRA----------------LP 1633
Query: 122 RRARA----RGPQPSPPGSSAAKA 141
RR+R+ +G PSP GSS+ ++
Sbjct: 1634 RRSRSGSSSKGRGPSPEGSSSTES 1657
>gi|239753555 PREDICTED: hypothetical protein XP_002345695 [Homo
sapiens]
Length = 258
Score = 34.3 bits (77), Expect = 0.053
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 68 RSSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXX--PRRAR 125
R++ RR S PA+ TR PA +A P GG + P R R
Sbjct: 89 RAACRREEARSWPAS-ATRA----PAAPPSASRPTRGGTRHRSRTLYCPLDQKQWPSRKR 143
Query: 126 ARGPQPSPPGSSAAKARGRSWKRAAAVP 153
R P PPGS K+R R W RA+ P
Sbjct: 144 ERPRLPPPPGS--RKSRLRRWARASPHP 169
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 34.3 bits (77), Expect = 0.053
Identities = 36/143 (25%), Positives = 48/143 (33%), Gaps = 7/143 (4%)
Query: 12 DAAASAAIPAESAPPLQSHPE-NGVSAPGKGTAAKGARGGQSRCCSVVAARLLRLTPRSS 70
D A P P +S G PG G+ + R G R R R S
Sbjct: 741 DGQTDRARPWSPPAPGESRDRARGAGQPGPGSGSGAERAGPERRARDTQTRTRRDKLTDS 800
Query: 71 ARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXXPRRARARGPQ 130
AR GR R+ G A A +G A P A + G +
Sbjct: 801 ARGGRARLTAGRRVRRESG-----RRRAGATSQGAIRRAASRARKGESRRPLPANSAG-R 854
Query: 131 PSPPGSSAAKARGRSWKRAAAVP 153
P+ P +AA++ SW A+ P
Sbjct: 855 PALPSPAAARSARGSWGLRASRP 877
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 34.3 bits (77), Expect = 0.053
Identities = 50/165 (30%), Positives = 62/165 (37%), Gaps = 44/165 (26%)
Query: 20 PAESAPPLQSHPENGVSAPGKGTAAKGA----RGGQSRCCSVVAARLLRLTPRSSA--RR 73
P+ APP S P + +S PG K + + C RL RS++ R
Sbjct: 1267 PSHPAPP--SDPSHQIS-PGPTWDIKREHDVRKPKELSACGQKKQRLGEQRERSASPQRA 1323
Query: 74 GRPESEPATNGT-RQQGDLPALSA---------AAEAPREGGKEEGAXXXXXXXXXXPRR 123
RP E A G R + PA A AA+A R GGKE PR
Sbjct: 1324 ARPRLEEAPGGQGRPEAGRPASEARAPGLAAADAADAARAGGKEA------------PRA 1371
Query: 124 A------RARGPQPSPP-------GSSAAKARGRSWKRAAAVPKP 155
A R GP +P GS A +A GR+ RA P P
Sbjct: 1372 AAGSELCRREGPGAAPAFAGPGGGGSGALEAEGRAGARAGPRPGP 1416
Score = 27.7 bits (60), Expect = 5.0
Identities = 33/98 (33%), Positives = 38/98 (38%), Gaps = 17/98 (17%)
Query: 2 EPRSAADAAADAAASAAIPAESAPPLQSHPE-NGVSAPGKGTAAKGARGGQSRCCSVVAA 60
E R+ AAADAA +A + AP + E PG A G GG S
Sbjct: 1346 EARAPGLAAADAADAARAGGKEAPRAAAGSELCRREGPGAAPAFAGPGGGGSGA------ 1399
Query: 61 RLLRLTPRSSARRG-RPESEPATNGTRQQGDLPALSAA 97
L R+ AR G RP G R G PA AA
Sbjct: 1400 --LEAEGRAGARAGPRP-------GPRPPGGAPARKAA 1428
>gi|58331144 proline rich region 18 [Homo sapiens]
Length = 295
Score = 34.3 bits (77), Expect = 0.053
Identities = 32/109 (29%), Positives = 38/109 (34%), Gaps = 22/109 (20%)
Query: 17 AAIPAESAPPLQSHPENG-------VSAPGKGTAAKGARGGQSRCCSVVAARLLRLTPRS 69
A PA APP + + ++ G GT A G G C A L LTP +
Sbjct: 84 ARAPATCAPPRPAGSGHSPARTTYAATSAGTGTTAAGTSSGAGPCPDSAARFCLNLTPEA 143
Query: 70 -------------SARRGRPESEPATNGTRQQGDLPALSAAAEAPREGG 105
AR RP P+ R P L A A PR GG
Sbjct: 144 VLVIQKRHLEKQLLARPRRPFPSPSAEPRRLLA--PCLPARAAGPRRGG 190
>gi|54633315 deoxynucleotidyltransferase, terminal, interacting
protein 2 [Homo sapiens]
Length = 756
Score = 33.9 bits (76), Expect = 0.069
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 4 RSAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAARLL 63
R+ A A +A S+ + +A +Q+HPE+ + + TA G QS L+
Sbjct: 8 RAKASIQAASAESSGQKSFAANGIQAHPESSTGSDARTTAESQTTGKQS---------LI 58
Query: 64 RLTPRSSARRGRPE------SEPATNGTRQQGD 90
TP++ R+ R +EP+T+G + +
Sbjct: 59 PRTPKARKRKSRTTGSLPKGTEPSTDGETSEAE 91
>gi|239757014 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 33.9 bits (76), Expect = 0.069
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 20 PAESAPPLQSHPENGVSA------PGKGTAAKGARGGQSRCCSVVAARLLRLTPRSSARR 73
P PP P+ G SA P + A + R RCCSVV A R RSS+R
Sbjct: 150 PTRGDPP--PSPDTGFSARACERVPARRPARRRERALCGRCCSVVVAVRRRRRRRSSSRT 207
Query: 74 GRPESEPATNGTRQQG--------DLPALS 95
P S A QG LPA+S
Sbjct: 208 RLPSSSGAALRRPWQGAWEVSVRPSLPAVS 237
>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 33.9 bits (76), Expect = 0.069
Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 18/142 (12%)
Query: 3 PRSAADAAADAAASAAIPAESAPPLQSHPENGVSAPGKGTAAKGARGGQSRCCSVVAARL 62
P S A AAA AAA+A+ P+ + S + S P A+ R + S +AR
Sbjct: 183 PLSPAAAAAAAAAAASAPSAGS----SSSCSSASLP----ASPAPRAARKASPSPSSAR- 233
Query: 63 LRLTPRSSARRGRPESEPATNGTRQQGDLPALSAAAEAPREGGKEEGAXXXXXXXXXXPR 122
P + +R GR + R++G L + S A+ + G P
Sbjct: 234 -TQPPPAGSRTGRKSHSLDSLSRRREGALSSESGASSSSYSG--------ESLRELRWPP 284
Query: 123 RARARGPQPSPPGSSAAKARGR 144
RA AR P+ SS A GR
Sbjct: 285 RASARNSCPAGSASSTTNAPGR 306
>gi|239747122 PREDICTED: hypothetical protein XP_002343916 [Homo
sapiens]
Length = 598
Score = 33.9 bits (76), Expect = 0.069
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 20 PAESAPPLQSHPENGVSA------PGKGTAAKGARGGQSRCCSVVAARLLRLTPRSSARR 73
P PP P+ G SA P + A + R RCCSVV A R RSS+R
Sbjct: 467 PTRGDPP--PSPDTGFSARACERVPARRPARRRERALCGRCCSVVVAVRRRRRRRSSSRT 524
Query: 74 GRPESEPATNGTRQQG--------DLPALS 95
P S A QG LPA+S
Sbjct: 525 RLPSSSGAALRRPWQGAWEVSVRPSLPAVS 554
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.124 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,637,569
Number of Sequences: 37866
Number of extensions: 389860
Number of successful extensions: 3157
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 293
Number of HSP's that attempted gapping in prelim test: 2731
Number of HSP's gapped (non-prelim): 668
length of query: 170
length of database: 18,247,518
effective HSP length: 95
effective length of query: 75
effective length of database: 14,650,248
effective search space: 1098768600
effective search space used: 1098768600
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.