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Search of human proteins with 239756071
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756071 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
(127 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756073 PREDICTED: hypothetical protein isoform 1 [Homo sap... 266 2e-72
gi|239756071 PREDICTED: hypothetical protein isoform 2 [Homo sap... 266 2e-72
gi|239750602 PREDICTED: hypothetical protein XP_002347477 isofor... 266 2e-72
gi|239750600 PREDICTED: hypothetical protein XP_002347478 isofor... 266 2e-72
gi|239744909 PREDICTED: hypothetical protein XP_002343293 isofor... 266 2e-72
gi|239744907 PREDICTED: hypothetical protein XP_002343294 isofor... 266 2e-72
gi|169217681 PREDICTED: similar to hCG1747328, partial [Homo sap... 30 0.65
gi|239749213 PREDICTED: mucin 3B, cell surface associated, parti... 30 0.65
gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens] 30 0.65
gi|169170721 PREDICTED: similar to intestinal mucin [Homo sapiens] 30 0.65
gi|239754456 PREDICTED: hypothetical protein [Homo sapiens] 28 1.5
gi|169169843 PREDICTED: hypothetical protein [Homo sapiens] 28 1.9
gi|169168890 PREDICTED: hypothetical protein LOC441172 [Homo sap... 28 1.9
gi|169169339 PREDICTED: hypothetical protein LOC441172 [Homo sap... 28 1.9
gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo... 27 3.2
gi|24415404 MDN1, midasin homolog [Homo sapiens] 27 5.5
gi|52627207 olfactory receptor, family 4, subfamily C, member 12... 26 7.2
gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens] 26 7.2
gi|239746595 PREDICTED: hypothetical protein XP_002343793 [Homo ... 26 9.4
gi|4557567 epiregulin preproprotein [Homo sapiens] 26 9.4
gi|156105693 PPAR-alpha interacting complex protein 285 isoform ... 26 9.4
gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens] 26 9.4
gi|156105695 PPAR-alpha interacting complex protein 285 isoform ... 26 9.4
>gi|239756073 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 127
Score = 266 bits (681), Expect = 2e-72
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV
Sbjct: 1 MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
Query: 61 CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG
Sbjct: 61 CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
Query: 121 AAAGGTV 127
AAAGGTV
Sbjct: 121 AAAGGTV 127
>gi|239756071 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 127
Score = 266 bits (681), Expect = 2e-72
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV
Sbjct: 1 MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
Query: 61 CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG
Sbjct: 61 CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
Query: 121 AAAGGTV 127
AAAGGTV
Sbjct: 121 AAAGGTV 127
>gi|239750602 PREDICTED: hypothetical protein XP_002347477 isoform 1
[Homo sapiens]
Length = 127
Score = 266 bits (681), Expect = 2e-72
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV
Sbjct: 1 MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
Query: 61 CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG
Sbjct: 61 CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
Query: 121 AAAGGTV 127
AAAGGTV
Sbjct: 121 AAAGGTV 127
>gi|239750600 PREDICTED: hypothetical protein XP_002347478 isoform 2
[Homo sapiens]
Length = 127
Score = 266 bits (681), Expect = 2e-72
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV
Sbjct: 1 MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
Query: 61 CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG
Sbjct: 61 CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
Query: 121 AAAGGTV 127
AAAGGTV
Sbjct: 121 AAAGGTV 127
>gi|239744909 PREDICTED: hypothetical protein XP_002343293 isoform 1
[Homo sapiens]
Length = 127
Score = 266 bits (681), Expect = 2e-72
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV
Sbjct: 1 MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
Query: 61 CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG
Sbjct: 61 CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
Query: 121 AAAGGTV 127
AAAGGTV
Sbjct: 121 AAAGGTV 127
>gi|239744907 PREDICTED: hypothetical protein XP_002343294 isoform 2
[Homo sapiens]
Length = 127
Score = 266 bits (681), Expect = 2e-72
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV
Sbjct: 1 MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
Query: 61 CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG
Sbjct: 61 CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
Query: 121 AAAGGTV 127
AAAGGTV
Sbjct: 121 AAAGGTV 127
>gi|169217681 PREDICTED: similar to hCG1747328, partial [Homo
sapiens]
Length = 245
Score = 29.6 bits (65), Expect = 0.65
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 22/91 (24%)
Query: 37 DVSLLRAGPVCTVGVPGAVCQAAVCDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVH 96
+ + LR CT GV A+ D H G ++ + P TD
Sbjct: 91 EATRLRCVTKCTSGVDNAI------DCHQGQCVLETSGPTCR---CYSTD---------- 131
Query: 97 KGVHWFAPPLCHIPAPHHLVTVGGAAAGGTV 127
HWF+ P C + A H VGG AG +
Sbjct: 132 --THWFSGPRCEV-AVHWRALVGGLTAGAAL 159
>gi|239749213 PREDICTED: mucin 3B, cell surface associated, partial
[Homo sapiens]
Length = 1063
Score = 29.6 bits (65), Expect = 0.65
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 22/91 (24%)
Query: 37 DVSLLRAGPVCTVGVPGAVCQAAVCDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVH 96
+ + LR CT GV A+ D H G ++ + P TD
Sbjct: 909 EATRLRCVTKCTSGVDNAI------DCHQGQCVLETSGPACR---CYSTD---------- 949
Query: 97 KGVHWFAPPLCHIPAPHHLVTVGGAAAGGTV 127
HWF+ P C + A H VGG AG +
Sbjct: 950 --THWFSGPRCEV-AVHWRALVGGLTAGAAL 977
>gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens]
Length = 1486
Score = 29.6 bits (65), Expect = 0.65
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 22/91 (24%)
Query: 37 DVSLLRAGPVCTVGVPGAVCQAAVCDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVH 96
+ + LR CT GV A+ D H G ++ + P TD
Sbjct: 1332 EATRLRCVTKCTSGVDNAI------DCHQGQCVLETSGPACR---CYSTD---------- 1372
Query: 97 KGVHWFAPPLCHIPAPHHLVTVGGAAAGGTV 127
HWF+ P C + A H VGG AG +
Sbjct: 1373 --THWFSGPRCEV-AVHWRALVGGLTAGAAL 1400
>gi|169170721 PREDICTED: similar to intestinal mucin [Homo sapiens]
Length = 310
Score = 29.6 bits (65), Expect = 0.65
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 22/91 (24%)
Query: 37 DVSLLRAGPVCTVGVPGAVCQAAVCDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVH 96
+ + LR CT GV A+ D H G ++ + P TD
Sbjct: 156 EATRLRCVTKCTSGVDNAI------DCHQGQCVLETSGPACR---CYSTD---------- 196
Query: 97 KGVHWFAPPLCHIPAPHHLVTVGGAAAGGTV 127
HWF+ P C + A H VGG AG +
Sbjct: 197 --THWFSGPRCEV-AVHWRALVGGLTAGAAL 224
>gi|239754456 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 28.5 bits (62), Expect = 1.5
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 46 VCTVGVPGAVCQAAVCDVHAGVALVAVALPVLA 78
VCT GV VC A VC AGV + A P A
Sbjct: 15 VCTAGV--CVCTAGVCVCTAGVCMCTDAQPTTA 45
>gi|169169843 PREDICTED: hypothetical protein [Homo sapiens]
Length = 213
Score = 28.1 bits (61), Expect = 1.9
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 83 LETDILDIYQGLVHKGVHW-------FAPPLCHIPAPHHLVTVGGAAAG 124
L ++ + G +G+ W F PP CH P H L G AG
Sbjct: 140 LALELAEDVPGAARQGLLWTEVRARSFVPPRCHPPTAHLLAGERGVEAG 188
>gi|169168890 PREDICTED: hypothetical protein LOC441172 [Homo
sapiens]
Length = 324
Score = 28.1 bits (61), Expect = 1.9
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 83 LETDILDIYQGLVHKGVHW-------FAPPLCHIPAPHHLVTVGGAAAG 124
L ++ + G +G+ W F PP CH P H L G AG
Sbjct: 140 LALELAEDVPGAARQGLLWTEVRARSFVPPRCHPPTAHLLAGKRGVEAG 188
>gi|169169339 PREDICTED: hypothetical protein LOC441172 [Homo
sapiens]
Length = 324
Score = 28.1 bits (61), Expect = 1.9
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 83 LETDILDIYQGLVHKGVHW-------FAPPLCHIPAPHHLVTVGGAAAG 124
L ++ + G +G+ W F PP CH P H L G AG
Sbjct: 140 LALELAEDVPGAARQGLLWTEVRARSFVPPRCHPPTAHLLAGKRGVEAG 188
>gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo
sapiens]
Length = 323
Score = 27.3 bits (59), Expect = 3.2
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 100 HWFAPP----LCHIPAPHHLVTVGGAAA 123
HW P +C +P PHH V+ GA +
Sbjct: 287 HWGGMPCPCSMCQVPPPHHHVSAMGAGS 314
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 26.6 bits (57), Expect = 5.5
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 15 GRVLHRSIKVDWHIWAPFTGHNDVSLLRA----GPVCTVGVPGAVCQAAVCDVHAGVALV 70
G VLHR+ D+ + A T N LLRA P+ G PG + V G
Sbjct: 1714 GPVLHRNNIADYALSAGTTAMNAQRLLRATKLKKPILLEGSPGVGKTSLV-----GALAK 1768
Query: 71 AVALPVLAGDLFLETDILDIY 91
A ++ +L +TDI D++
Sbjct: 1769 ASGNTLVRINLSEQTDITDLF 1789
>gi|52627207 olfactory receptor, family 4, subfamily C, member 12
[Homo sapiens]
Length = 309
Score = 26.2 bits (56), Expect = 7.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 9 LAALTLGRVLHRSIKVDWHIWAPFTGHN 36
+A +G LH +I++ + +W PF G N
Sbjct: 143 VAVAWVGGFLHATIQILFTVWLPFCGPN 170
>gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens]
Length = 1379
Score = 26.2 bits (56), Expect = 7.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 102 FAPPLCHIPAPHHLVTVGG 120
+APP C +P PH GG
Sbjct: 679 YAPPTCTMPLPHEEKAAGG 697
>gi|239746595 PREDICTED: hypothetical protein XP_002343793 [Homo
sapiens]
Length = 663
Score = 25.8 bits (55), Expect = 9.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 110 PAPHHLVTVGGAAAGGTV 127
P+P HL++VG A + GT+
Sbjct: 91 PSPTHLISVGSAQSQGTI 108
>gi|4557567 epiregulin preproprotein [Homo sapiens]
Length = 169
Score = 25.8 bits (55), Expect = 9.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 47 CTVGVPGAVCQAAVCDVHAGVALVAVALPVLAGDLFLETDILDIY 91
C VG G C+ VH ++ VAL V+ LFL T + Y
Sbjct: 94 CEVGYTGVRCEHFFLTVHQPLSKEYVALTVILIILFLITVVGSTY 138
>gi|156105693 PPAR-alpha interacting complex protein 285 isoform 1
[Homo sapiens]
Length = 2649
Score = 25.8 bits (55), Expect = 9.4
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 19 HRSIKVDWHIWA--PFTGHNDVSLLR 42
H S++VDW+ WA P + DV L R
Sbjct: 1660 HYSLQVDWYTWATSPIRRYLDVVLQR 1685
>gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]
Length = 739
Score = 25.8 bits (55), Expect = 9.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 38 VSLLRAGPVCTVGVPGAVCQAAVCDVHAGVALVAVALP 75
+ LL AGP V V A A V +++GV + A+ LP
Sbjct: 494 LQLLAAGPGSPVKVAAAAGPANVHLINSGVGVTALQLP 531
>gi|156105695 PPAR-alpha interacting complex protein 285 isoform 2
[Homo sapiens]
Length = 2080
Score = 25.8 bits (55), Expect = 9.4
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 19 HRSIKVDWHIWA--PFTGHNDVSLLR 42
H S++VDW+ WA P + DV L R
Sbjct: 1091 HYSLQVDWYTWATSPIRRYLDVVLQR 1116
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.143 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,353,181
Number of Sequences: 37866
Number of extensions: 220438
Number of successful extensions: 560
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 24
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.